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On the Metaheuristics Approach to the Problem of Genetic Sequence Comparison and Its Parallel Implementation

On the Metaheuristics Approach to the Problem of Genetic Sequence Comparison and Its Parallel Implementation
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摘要 We describe parallel implementation of the metaheuristic approach to the problem of comparing strings representing DNA sequence. By this approach, one can define a whole new class of metrics on a set of strings;some of this metrics can lead to interesting results when used for string comparison. We propose several heuristics;compare results achieved when using those heuristics and compare parallel and sequential implementation of proposed approach. We describe parallel implementation of the metaheuristic approach to the problem of comparing strings representing DNA sequence. By this approach, one can define a whole new class of metrics on a set of strings;some of this metrics can lead to interesting results when used for string comparison. We propose several heuristics;compare results achieved when using those heuristics and compare parallel and sequential implementation of proposed approach.
出处 《Applied Mathematics》 2013年第10期35-39,共5页 应用数学(英文)
关键词 METAHEURISTIC APPROACH GENETIC Sequence Analysis Levenshtein Distance Strings ALIGNMENT Parallel PROGRAMMING Metaheuristic Approach Genetic Sequence Analysis Levenshtein Distance Strings Alignment Parallel Programming
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