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A News Media Bias and Factuality Profiling Framework Assisted by Modeling Correlation
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作者 Qi Wang Chenxin Li +3 位作者 Chichen Lin Weijian Fan Shuang Feng Yuanzhong Wang 《Computers, Materials & Continua》 SCIE EI 2024年第11期3351-3369,共19页
News media profiling is helpful in preventing the spread of fake news at the source and maintaining a good media and news ecosystem.Most previous works only extract features and evaluate media from one dimension indep... News media profiling is helpful in preventing the spread of fake news at the source and maintaining a good media and news ecosystem.Most previous works only extract features and evaluate media from one dimension independently,ignoring the interconnections between different aspects.This paper proposes a novel news media bias and factuality profiling framework assisted by correlated features.This framework models the relationship and interaction between media bias and factuality,utilizing this relationship to assist in the prediction of profiling results.Our approach extracts features independently while aligning and fusing them through recursive convolu-tion and attention mechanisms,thus harnessing multi-scale interactive information across different dimensions and levels.This method improves the effectiveness of news media evaluation.Experimental results indicate that our proposed framework significantly outperforms existing methods,achieving the best performance in Accuracy and F1 score,improving by at least 1%compared to other methods.This paper further analyzes and discusses based on the experimental results. 展开更多
关键词 News media profiling factuality BIAS correlated features
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Predicting Age and Gender in Author Profiling: A Multi-Feature Exploration
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作者 Aiman Muhammad Arshad +2 位作者 Bilal Khan Sadique Ahmad Muhammad Asim 《Computers, Materials & Continua》 SCIE EI 2024年第5期3333-3353,共21页
Author Profiling (AP) is a subsection of digital forensics that focuses on the detection of the author’s personalinformation, such as age, gender, occupation, and education, based on various linguistic features, e.g.... Author Profiling (AP) is a subsection of digital forensics that focuses on the detection of the author’s personalinformation, such as age, gender, occupation, and education, based on various linguistic features, e.g., stylistic,semantic, and syntactic. The importance of AP lies in various fields, including forensics, security, medicine, andmarketing. In previous studies, many works have been done using different languages, e.g., English, Arabic, French,etc.However, the research on RomanUrdu is not up to the mark.Hence, this study focuses on detecting the author’sage and gender based on Roman Urdu text messages. The dataset used in this study is Fire’18-MaponSMS. Thisstudy proposed an ensemble model based on AdaBoostM1 and Random Forest (AMBRF) for AP using multiplelinguistic features that are stylistic, character-based, word-based, and sentence-based. The proposed model iscontrasted with several of the well-known models fromthe literature, including J48-Decision Tree (J48),Na飗e Bays(NB), K Nearest Neighbor (KNN), and Composite Hypercube on Random Projection (CHIRP), NB-Updatable,RF, and AdaboostM1. The overall outcome shows the better performance of the proposed AdaboostM1 withRandom Forest (ABMRF) with an accuracy of 54.2857% for age prediction and 71.1429% for gender predictioncalculated on stylistic features. Regarding word-based features, age and gender were considered in 50.5714% and60%, respectively. On the other hand, KNN and CHIRP show the weakest performance using all the linguisticfeatures for age and gender prediction. 展开更多
关键词 Digital forensics author profiling for security AdaBoostM1 random forest ensemble learning
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Genomic profiling of colorectal cancer in large-scale Chinese patients:amplification and somatic mutations in ERBB2
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作者 YUZHI LIU EVELYNE BISCHOF +5 位作者 ZHIQIN CHEN JIAHUAN ZHOU BEI ZHANG DING ZHANG YONG GAO MING QUAN 《Oncology Research》 SCIE 2024年第9期1429-1438,共10页
Objectives:Human epidermal growth factor receptor 2(HER2)-targeted therapies have demonstrated potential benefits for metastatic colorectal cancer(mCRC)patients with HER2 amplification,but are not satisfactory in case... Objectives:Human epidermal growth factor receptor 2(HER2)-targeted therapies have demonstrated potential benefits for metastatic colorectal cancer(mCRC)patients with HER2 amplification,but are not satisfactory in cases of HER2 mutant CRCs.Methods:Consequently,further elucidation of amplifications and somatic mutations in erythroblastic oncogene B-2(ERBB2)is imperative.Comprehensive genomic profiling was conducted on 2454 Chinese CRC cases to evaluate genomic alterations in 733 cancer-related genes,tumor mutational burden,microsatellite instability,and programmed death ligand 1(PD-L1)expression.Results:Among 2454 CRC patients,85 cases(3.46%)exhibited ERBB2 amplification,and 55 cases(2.24%)carried ERBB2 mutation.p.R678Q(28%),p.V8421(24%),and p.S310F/Y(12%)were the most prevalent of the 16 detected mutation sites.In comparison to the ERBB2 altered(alt)group,KRAS/BRAF mutations were more prevalent in ERBB2 wild-type(wt)samples(ERBB2wt vs.ERBB2alt,KRAS:50.9%vs.25.6%,p<0.05;BRAF:8.5%vs.2.3%,p<0.05).32.7%(18/55)of CRCs with ERBB2 mutation exhibited microsatellite instability high(MSI-H),while no cases with HER2 amplification displayed MSI-H.Mutant genes varied between ERBB2 copy number variation(CNV)and ERBB2 single nucleotide variant(SNV);TP53 alterations tended to co-occur with ERBB2 amplification(92.3%)as opposed to ERBB2 mutation(58.3%).KRAS and PIK3CA alterations were more prevalent in ERBB2 SNV cases(KRAS/PIK3CA:45.8%/31.2%)compared to ERBB2 amplification cases(KRAS/PIK3CA:14.1%/7.7%).Conclusion:Our study delineates the landscape of HER2 alterations in a large-scale cohort of CRC patients from China.These findings enhance our understanding of the molecular features of Chinese CRC patients and offer valuable implications for further investigation. 展开更多
关键词 Colorectal cancer ERBB2 HER2 Human epidermal growth factor receptor 2 Genetic profiling Precision oncology
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ABMRF:An Ensemble Model for Author Profiling Based on Stylistic Features Using Roman Urdu
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作者 Aiman Muhammad Arshad +3 位作者 Bilal Khan Khalil Khan Ali Mustafa Qamar Rehan Ullah Khan 《Intelligent Automation & Soft Computing》 2024年第2期301-317,共17页
This study explores the area of Author Profiling(AP)and its importance in several industries,including forensics,security,marketing,and education.A key component of AP is the extraction of useful information from text... This study explores the area of Author Profiling(AP)and its importance in several industries,including forensics,security,marketing,and education.A key component of AP is the extraction of useful information from text,with an emphasis on the writers’ages and genders.To improve the accuracy of AP tasks,the study develops an ensemble model dubbed ABMRF that combines AdaBoostM1(ABM1)and Random Forest(RF).The work uses an extensive technique that involves textmessage dataset pretreatment,model training,and assessment.To evaluate the effectiveness of several machine learning(ML)algorithms in classifying age and gender,including Composite Hypercube on Random Projection(CHIRP),Decision Trees(J48),Na飗e Bayes(NB),K Nearest Neighbor,AdaboostM1,NB-Updatable,RF,andABMRF,they are compared.The findings demonstrate thatABMRFregularly beats the competition,with a gender classification accuracy of 71.14%and an age classification accuracy of 54.29%,respectively.Additional metrics like precision,recall,F-measure,Matthews Correlation Coefficient(MCC),and accuracy support ABMRF’s outstanding performance in age and gender profiling tasks.This study demonstrates the usefulness of ABMRF as an ensemble model for author profiling and highlights its possible uses in marketing,law enforcement,and education.The results emphasize the effectiveness of ensemble approaches in enhancing author profiling task accuracy,particularly when it comes to age and gender identification. 展开更多
关键词 Machine learning author profiling AdaBoostM1 random forest ensemble learning text classification
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AMachine Learning Approach to User Profiling for Data Annotation of Online Behavior
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作者 Moona Kanwal Najeed AKhan Aftab A.Khan 《Computers, Materials & Continua》 SCIE EI 2024年第2期2419-2440,共22页
The user’s intent to seek online information has been an active area of research in user profiling.User profiling considers user characteristics,behaviors,activities,and preferences to sketch user intentions,interest... The user’s intent to seek online information has been an active area of research in user profiling.User profiling considers user characteristics,behaviors,activities,and preferences to sketch user intentions,interests,and motivations.Determining user characteristics can help capture implicit and explicit preferences and intentions for effective user-centric and customized content presentation.The user’s complete online experience in seeking information is a blend of activities such as searching,verifying,and sharing it on social platforms.However,a combination of multiple behaviors in profiling users has yet to be considered.This research takes a novel approach and explores user intent types based on multidimensional online behavior in information acquisition.This research explores information search,verification,and dissemination behavior and identifies diverse types of users based on their online engagement using machine learning.The research proposes a generic user profile template that explains the user characteristics based on the internet experience and uses it as ground truth for data annotation.User feedback is based on online behavior and practices collected by using a survey method.The participants include both males and females from different occupation sectors and different ages.The data collected is subject to feature engineering,and the significant features are presented to unsupervised machine learning methods to identify user intent classes or profiles and their characteristics.Different techniques are evaluated,and the K-Mean clustering method successfully generates five user groups observing different user characteristics with an average silhouette of 0.36 and a distortion score of 1136.Feature average is computed to identify user intent type characteristics.The user intent classes are then further generalized to create a user intent template with an Inter-Rater Reliability of 75%.This research successfully extracts different user types based on their preferences in online content,platforms,criteria,and frequency.The study also validates the proposed template on user feedback data through Inter-Rater Agreement process using an external human rater. 展开更多
关键词 User intent CLUSTER user profile online search information sharing user behavior search reasons
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Assessment of spermatogenesis in camels via seminiferous tubule staging and testosterone profiling
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作者 Saif Ullah Abdul Quddus +7 位作者 Quanwei Wei Wael Ennab Sheeraz Mustafa Jiahao Sun Rahmani Mohammad Malyar Abdul Baseer Dagan Mao Fangxiong Shi 《Asian pacific Journal of Reproduction》 CAS 2024年第3期133-142,共10页
Objective:To investigate the successive morphological stages of spermatogenesis,hormonal regulation,and testosterone profile in dromedary camel reproduction.Methods:Testicular tissue samples were obtained from 12 drom... Objective:To investigate the successive morphological stages of spermatogenesis,hormonal regulation,and testosterone profile in dromedary camel reproduction.Methods:Testicular tissue samples were obtained from 12 dromedary bull camels aged 7 to 8 at a local abattoir.The histological assessment involved tissue processing,hematoxylin and eosin(H&E)staining,and examination under a microscope.Stereological analysis,germ cell identification,and assessment of seminiferous tubules and maturation were conducted.Testosterone assay was performed by radioimmunoassay using blood samples collected at regular intervals.Results:The study revealed 12 phases of the dromedary camel's seminiferous epithelium cycle,highlighting distinct morphological characteristics and cellular processes.Acrosomal migration,maturation,cap formation,and the Golgi-mediated synthesis of proacrosomal vesicles were also explained in dimension,as were the steps of acrosome biogenesis.Spermatids and mature sperm cells were present when spermatogenesis phases were examined.An analysis of the dimensions of seminiferous tubules revealed specific measures for diameter,area,and epithelial height about luminal characteristics.Moreover,there were noticeable variations in the serum testosterone concentrations during the study period,indicating temporal dynamics.Conclusions:This study outlines the spermatogenesis process in dromedary camels across 12 stages,emphasizing cellular dynamics and acrosomal biogenesis.It also provides seminiferous tubule measurements and observes seasonal testosterone fluctuations,offering insights into reproductive regulation and potential strategies for camel breeding conservation. 展开更多
关键词 SPERMATOGENESIS CAMEL Testosterone profile Morphological staging
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DMMIC derivatization-assisted liquid chromatography-mass spectrometry method for metabolite profiling of the glutathione anabolic pathway in esophageal cancer tissues and cells 被引量:1
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作者 Li Liu Yu-Han Lu +5 位作者 Min-Dan Wang Qun-Fei Zhao Xiu-Ping Chen Hang Yin Chen-Guo Feng Fang Zhang 《Journal of Pharmaceutical Analysis》 SCIE CAS CSCD 2023年第11期1365-1373,共9页
In this work,a new pyrylium derivatization-assisted liquid chromatography-mass spectrometry(LC-MS)method was developed for metabolite profiling of the glutathione anabolic pathway(GAP)in cancer tissues and cells.The p... In this work,a new pyrylium derivatization-assisted liquid chromatography-mass spectrometry(LC-MS)method was developed for metabolite profiling of the glutathione anabolic pathway(GAP)in cancer tissues and cells.The pyrylium salt of 6,7-dimethoxy-3-methyl isochromenylium tetrafluoroborate(DMMIC)was used to label the amino group of metabolites,and a reductant of dithiothreitol(DTT)was employed to stabilize the thiol group.By combining DMMIC derivatization with LC-MS,it was feasible to quantify the 13 main metabolites on the GAP in complex biological samples,which had good linearity(R^(2)=0.99810.9999),precision(interday precision of 1.6%e19.0%and intraday precision of 1.4%e19.8%)and accuracy(83.4%-115.7%).Moreover,the recovery assessments in tissues(82.5%e107.3%)and in cells(98.1%e118.9%)with GSH-^(13)C2,^(15)N,and Cys-^(15)N demonstrated the reliability of the method in detecting tissues and cells.Following a methodological evaluation,the method was applied successfully to investigate difference in the GAP between the carcinoma and para-carcinoma tissues of esophageal squamous cell carcinoma(ESCC)and the effect of p-hydroxycinnamaldehyde(CMSP)on the GAP in KYSE150 esophageal cancer cells.The results demonstrate that the developed method provides a promising new tool to elucidate the roles of GAP in physiological and pathological processes,which can contribute to research on drugs and diseases. 展开更多
关键词 Glutathione anabolic pathway Metabolite profiling DMMIC derivatization LC-MS Esophageal squamous cell carcinoma p-Hydroxycinnamaldehyde KYSE-150cell
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Depth profiling of arsenian pyrite in Carlin-type ores through wet chemistry 被引量:1
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作者 Meizhi Yang Quan Wan +4 位作者 Xin Nie Suxing Luo Yuhong Fu Ping Zeng Wenqi Luo 《Acta Geochimica》 EI CAS CSCD 2023年第2期256-265,共10页
Enrichment of As and Au at the overgrowth rims of arsenian pyrite is a distinctive feature of Carlin-type gold ores.Revealing distribution of such key elements in high resolution is of fundamental importance yet often... Enrichment of As and Au at the overgrowth rims of arsenian pyrite is a distinctive feature of Carlin-type gold ores.Revealing distribution of such key elements in high resolution is of fundamental importance yet often proves challenging.In this study,repeated non-oxidative acid etching of ore samples from Shuiyindong gold deposit was applied to enable elemental depth profiling of goldbearing arsenian pyrite grains.ICP-OES and AAS were used to determine the dissolved Fe,As,and Au concentrations in each of the etching solutions,and XPS was carried out to exam the etched mineral surfaces.In contrast to conventional ion beam etching that may cause substantial sample damage,our acid etching method does not seem to significantly alter the composition and chemical state of the samples.The etched depths directly converted from the measured elemental concentrations can reproducibly reach a very high resolution of~1 nm,and can be conveniently controlled through varying the etching time.While the Fe and As depth profiles consistently reflect the surface oxidation property of arsenian pyrite,the Au profile displaying an obvious upward trend reveals the ore fluid evolution at the late stage of mineralization.Based on our experimental results,we demonstrate that our wet chemistry method is capable of effective depth profiling of gold ore and perhaps other geological samples,with advantages surpassing many instrumental techniques including negligible sample damage,nanoscale resolution as well as isotropic etching. 展开更多
关键词 Wet chemistry Acid etching Depth profiling Carlin-type gold deposits Arsenian pyrite
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Thermal integrity profiling of cast-in-situ piles in sand using fiber-optic distributed temperature sensing 被引量:1
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作者 Jing Wang Honghu Zhu +4 位作者 Daoyuan Tan Zili Li Jie Li Chao Wei Bin Shi 《Journal of Rock Mechanics and Geotechnical Engineering》 SCIE CSCD 2023年第12期3244-3255,共12页
Defects in cast-in-situ piles have an adverse impact on load transfer at the pile‒soil interface and pile bearing capacity. In recent years, thermal integrity profiling (TIP) has been developed to measure temperature ... Defects in cast-in-situ piles have an adverse impact on load transfer at the pile‒soil interface and pile bearing capacity. In recent years, thermal integrity profiling (TIP) has been developed to measure temperature profiles of cast-in-situ piles, enabling the detection of structural defects or anomalies at the early stage of construction. However, using this integrity testing method to evaluate potential defects in cast-in-situ piles requires a comprehensive understanding of the mechanism of hydration heat transfer from piles to surrounding soils. In this study, small-scale model tests were conducted in laboratory to investigate the performance of TIP in detecting pile integrity. Fiber-optic distributed temperature sensing (DTS) technology was used to monitor detailed temperature variations along model piles in sand. Additionally, sensors were installed in sand to measure water content and matric suction. An interpretation method against available DTS-based thermal profiles was proposed to reveal the potential defective regions. It shows that the temperature difference between normal and defective piles is more obvious in wet sand. In addition, there is a critical zone of water migration in sand due to the water absorption behavior of cement and temperature transfer-induced water migration in the early-age concrete setting. These findings could provide important insight into the improvement of the TIP testing method for field applications. 展开更多
关键词 Geotechnical monitoring Distributed temperature sensing(DTS) Pile defect Fiber-optic thermal integrity profiling(FO-TIP) Heat transfer Pile‒soil interface
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Molecular Profiling of Sugarcane Wine, a Traditional Fermented Beverage (Loungouila) from Madingou
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作者 Yannick Frédéric Okouakoua Nicaise Saturnin Mokémiabeka +4 位作者 Christian Aimé Kayath Moïse Doria Kaya-Ongoto Stech Anomène Eckzechel Nzaou Nkalla Lambi Ndelani Etienne Nguimbi 《American Journal of Molecular Biology》 2023年第4期197-212,共16页
A number of studies reported that traditional fermented beverages possessed pharmaceutical biomolecules involved in biocatalysis for good therapeutic effects on various pathology including tumor, diabetes, inflammatio... A number of studies reported that traditional fermented beverages possessed pharmaceutical biomolecules involved in biocatalysis for good therapeutic effects on various pathology including tumor, diabetes, inflammation, and obesity. This dimension of understanding is the prerogative of the biomolecular profile found in these fermented foods and beverages. The current work aimed to study the postfermentation molecular profile of the Congolese fermented beverage (Lougwila). The determination of pH, the acidity titratable, the distillation of sugar cane, the determination of total polyphenols and flavonoids and the matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) have been used. As results, the fermenting sugar cane juice at room temperature for a period of seven days, leading to a decrease of the pH value to 4.25 ± 0.10 and increase in titratable acidity and alcohol content of at least 6.421 g/L (w/v) and 7% respectively. The polyphenol concentration of Loungouila increase from 14.9 to 20.5 mg Eq AG/g Ms after 10 days of fermentation. The flavonoid concentration varies from 1.70 to 5.22 mg Eq Cat/g Ms. among 46 isolates of Bacillus species, 55% (25/45) were able to show a very interesting clear zones in terms of cellulolytic activity with the percentage ranging from 37.3% to 83.9%, and 41.3% of amylolytic activity for the percentage ranging from 52.02% to 75%. 65.21% (30/46) of the isolates tested were found to be positive by the caseinolytic test with zones of inhibition ranging in diameter from 1.10 ± 0.09 to 3.25 ± 0.07 cm. In addition to the determination of biomolecule profile, 34.78% (16/46) of Bacillus isolates were able to produce biosurfactants with percentages ranging from 14% to 100%. Proteomic profiling of Loungouila has been investigated by using MALDI-TOF Technique. Short sequences showed 100% identity and were associated with AprE, SubC, amyE, NprE, CelA, lytF, Mut, and ykfC proteins. The National Center for Biotechnology Information (NCBI) allowed to associate short sequences to Bacillus species. 展开更多
关键词 Loungouila Molecular profiling BACILLUS POLYPHENOL Flovanoids BIOSURFACTANT
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基于部分调用图的线程敏感Profiling技术 被引量:1
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作者 刘弢 吴承勇 张兆庆 《计算机工程》 CAS CSCD 北大核心 2008年第10期30-32,共3页
Profiling技术能提供程序实际执行时的相关信息。在动态编译环境中,Profiling的运行时开销导致难以收集较为复杂的运行时信息。该文提出一种基于部分调用图的Profiling技术,在收集多线程程序中线程相关的各种执行信息时,能有效减少运行... Profiling技术能提供程序实际执行时的相关信息。在动态编译环境中,Profiling的运行时开销导致难以收集较为复杂的运行时信息。该文提出一种基于部分调用图的Profiling技术,在收集多线程程序中线程相关的各种执行信息时,能有效减少运行时开销。在开放源码的虚拟机上实现了该Profiling技术。实验表明,其运行时开销只有原来的2%-4%。 展开更多
关键词 profiling技术 在线profiling 运行时环境
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基于OPT Cache替换Profiling的Cache提示生成
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作者 田兴彦 黄春 陈火旺 《计算机工程》 CAS CSCD 北大核心 2005年第20期85-87,共3页
提出了一个基于最优Cache替换(OPT)Profiling的静态Cache提示生成方法,并通过模拟SPEC2000Int测试程序,对该方法与LRUCache替换策略进行了性能比较。
关键词 Cache提示 profiling优化 OPT Cache替换
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指导cache静态划分的程序性能profiling优化技术 被引量:3
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作者 贾耀仓 武成岗 张兆庆 《计算机研究与发展》 EI CSCD 北大核心 2012年第1期93-102,共10页
对于共享cache的多核处理器,如何管理好各个核对cache的利用,对于充分发挥多核处理器性能是很关键的问题.目前采用的cache替换方法程序间会出现性能干扰,cache静态划分技术则是通过为同时运行的程序分配不同的空间来解决性能干扰问题.... 对于共享cache的多核处理器,如何管理好各个核对cache的利用,对于充分发挥多核处理器性能是很关键的问题.目前采用的cache替换方法程序间会出现性能干扰,cache静态划分技术则是通过为同时运行的程序分配不同的空间来解决性能干扰问题.为了给程序分配合适大小的cache空间,需要对程序进行性能profiling,即事先多遍运行收集程序在各种cache容量下的性能数据,这种性能profiling方法开销巨大,影响实用.为了解决性能profiling需要多遍运行程序的问题,提出了只需单遍运行的程序性能profiling优化技术.该技术利用在线的phase分析技术识别程序的运行阶段,避免对相同阶段的重复profiling;同时分析程序各phase的性能同cache容量变化的关系趋势,对于性能不敏感的容量变化则不进行profiling,降低开销.在程序运行结束后通过程序各phase在cache各种容量下的性能来估计程序在各容量下的整体性能,以指导cache静态划分.实验表明,该技术的开销仅为7%,而该方法指导的cache划分比未划分时有8%的性能改进,同多遍运行的程序性能profiling指导的cache划分性能相比仅有1%的下降. 展开更多
关键词 多核 CACHE划分 页着色 性能profiling phase分析
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Cache Profiling技术 被引量:2
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作者 周谦 冯晓兵 张兆庆 《计算机工程》 EI CAS CSCD 北大核心 2006年第13期47-48,共2页
如何减少和隐藏cache失效的延迟,是人们关注的热点。编译器为了得到cache访问命中的情况,往往使用模拟器去跑一遍来得到结果,这样的速度很慢。为了克服以上缺点,提出了在编译器中作cache profiling来获取cache访问的信息。类似于value p... 如何减少和隐藏cache失效的延迟,是人们关注的热点。编译器为了得到cache访问命中的情况,往往使用模拟器去跑一遍来得到结果,这样的速度很慢。为了克服以上缺点,提出了在编译器中作cache profiling来获取cache访问的信息。类似于value profiling和strideprofiling,cache profiling对访存指令作插装,可以有效地提高速度,并且只需要编译器的支持即可。Cache profiling获得的信息可以用来改进指令调度、软件预取、生成cache hint和辅助线程等。 展开更多
关键词 profiling CACHE profiling CACHE HINT 编译器
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基于动态profiling技术的流水粒度调优 被引量:2
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作者 马琳 陈莉 冯晓兵 《计算机研究与发展》 EI CSCD 北大核心 2005年第6期1065-1072,共8页
结点间流水是解决数据分布和计算分割不一致时的一种重要的并行发掘技术.结点间流水通过计算与通信的重叠获得并行度.精确的流水粒度是获得良好的流水性能的关键.流水分块取决于很多因素,如程序规模、程序的访问模式、结点规模、结点的... 结点间流水是解决数据分布和计算分割不一致时的一种重要的并行发掘技术.结点间流水通过计算与通信的重叠获得并行度.精确的流水粒度是获得良好的流水性能的关键.流水分块取决于很多因素,如程序规模、程序的访问模式、结点规模、结点的计算能力和存储体系、通信系统的性能、通信库开销等等.提出了动态profiling方式并实现在流水粒度的推导中,运行时信息收集部分典型分块,结合代价模型推导流水粒度,该模型考虑局部性优化;探索如何减少插桩执行的开销的同时保证代价模型的精度.实验证明,这种方式有更好的适应性,能获得较好的流水并行. 展开更多
关键词 结点间流水 动态profiling技术 循环变换
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cache profiling信息指导的软件流水 被引量:1
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作者 周谦 冯晓兵 张兆庆 《计算机研究与发展》 EI CSCD 北大核心 2008年第5期834-840,共7页
软件流水是一种重要的指令调度技术,它通过同时执行来自不同循环迭代的指令来加快循环的执行时间.随着处理器速度和访存速度差距越拉越大,访存指令尤其是cache miss的访存指令日益成为系统性能提高的瓶颈.由于这些指令的延迟不是固定的... 软件流水是一种重要的指令调度技术,它通过同时执行来自不同循环迭代的指令来加快循环的执行时间.随着处理器速度和访存速度差距越拉越大,访存指令尤其是cache miss的访存指令日益成为系统性能提高的瓶颈.由于这些指令的延迟不是固定的,如何在软件流水中预测并掩盖这些访存指令的延迟是非常重要的.与前人预测访存延迟的方法不同,引入cache profiling技术,通过动态收集到profile信息来预测访存延迟,并进行适当的调度.当增加模调度循环中的访存指令的延迟时,启动间隔也会随之增大,导致性能不会随之上升.CSMS算法和FLMS算法在尽量不增大启动间隔的情况下,改变访存指令的延迟.改进了CSMS算法和FLMS算法,根据cache profiling的信息来改变访存延迟,所以比前人的方法更为准确.实验表明,新方法可以有效地提高程序性能,对SPEC2000测试程序平均性能提高1%左右,个别例子的性能改进高达11%. 展开更多
关键词 软件流水 模调度 CACHE profiling 访存延迟 高性能计算
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Gene expression profiling:Canonical molecular changes and clinicopathological features in sporadic colorectal cancers 被引量:36
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作者 Jin Cheon Kim Seon Young Kim +4 位作者 Seon Ae Roh Dong-Hyung Cho Dae Dong Kim Jeong Hyun Kim Yong Sung Kim 《World Journal of Gastroenterology》 SCIE CAS CSCD 2008年第43期6662-6672,共11页
AIM: To investigate alternative or subordinate pathways involved in colorectal tumorigenesis and tumor growth, possibly determining at-risk populations and predicting responses to treatment. METHODS: Using microarra... AIM: To investigate alternative or subordinate pathways involved in colorectal tumorigenesis and tumor growth, possibly determining at-risk populations and predicting responses to treatment. METHODS: Using microarray gene-expression analysis, we analyzed patterns of gene expression relative to canonical molecular changes and clinicopathological features in 84 sporadic colorectal cancer patients, standardized by tumor location. Subsets of differentially expressed genes were confirmed by real-time reverse-transcript polymerase chain reaction (RT-PCR). RESULTS: The largest number of genes identified as being differentially expressed was by tumor location, and the next largest number by lymphovascular or neural invasion of tumor cells and by mismatch repair (NMR) defects. Amongst biological processes, the immune response was significantly implicated in entire molecular changes observed during colorectal tumorigenesis (P 〈 0.001). Amongst 47 differentially expressed genes, seven (PISD, NIBP, BAI2, STOML1, MRPL21, MRPL16, and MKKS) were newly found to correlate with tumorigenesis and tumor growth. Most location-associated molecular changes had distinct effects on gene expression, but the effects of the latter were sometimes contradictory. CONCLUSION: We show that several differentially expressed genes were associated with canonical molecular changes in sporadic colorectal cancers, possibly constituting alternative or subordinate pathways of tumorigenesis. As tumor location was the dominant factor influencing differential gene expression, location-specific analysis may identify location-associated pathways and enhance the accuracy of class prediction. 展开更多
关键词 Colorectal adenocarcinomas SPORADIC Gene expression profiling TUMORIGENESIS
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An upper ocean response to Typhoon Bolaven analyzed with Argo profiling floats 被引量:22
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作者 LIU Zenghong XU Jianping +1 位作者 SUN Chaohui WU Xiaofen 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2014年第11期90-101,共12页
In situ observations from Argo profiling floats combined with satellite retrieved SST and rain rate are used to investigate an upper ocean response to Typhoon Bolaven from 20 through 29 August 2012. After the passage ... In situ observations from Argo profiling floats combined with satellite retrieved SST and rain rate are used to investigate an upper ocean response to Typhoon Bolaven from 20 through 29 August 2012. After the passage of Typhoon Bolaven, the deepening of mixed layer depth(MLD), and the cooling of mixed layer temperature(MLT) were observed. The changes in mixed layer salinity(MLS) showed an equivalent number of increasing and decreasing because the typhoon-induced salinity changes in the mixed layer were influenced by precipitation, evaporation, turbulent mixing and upwelling of thermocline water. The deepening of the MLD and the cooling of the MLT indicated a significant rightward bias, whereas the MLS was freshened to the left side of the typhoon track and increased on the other side. Intensive temperature and salinity profiles observed by Iridium floats make it possible to view response processes in the upper ocean after the passage of a typhoon. The cooling in the near-surface and the warming in the subsurface were observed by two Iridium floats located to the left side of the cyclonic track during the development stage of the storm, beyond the radius of maximum winds relative to the typhoon center. Water salinity increases at the base of the mixed layer and the top of the thermocline were the most obvious change observed by those two floats. On the right side of the track and near the typhoon center when the typhoon was intensified, the significant cooling from sea surface to a depth of 200×10^4 Pa, with the exception of the water at the top of the thermocline, was observed by the other Iridium float. Owing to the enhanced upwelling near the typhoon center, the water salinity in the near-surface increased noticeably. The heat pumping from the mixed layer into the thermocline induced by downwelling and the upwelling induced by the positive wind stress curl are the main causes for the different temperature and salinity variations on the different sides of the track. It seems that more time is required for the anomalies in the subsurface to be restored to pretyphoon conditions than for the anomalies in the mixed layer. 展开更多
关键词 Typhoon Bolaven Argo profiling floats upper ocean response ocean heat content
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基于edge profiling的循环运行时信息分析方法
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作者 牛晓霞 吴艳霞 +2 位作者 顾国昌 张博为 李静梅 《计算机工程与应用》 CSCD 2012年第29期8-12,50,共6页
应用程序中循环部分往往是计算密集型应用的主要工作负载,随着基于FPGA的可重构计算系统的出现,循环的静态分析技术已不能满足可重构计算系统根据程序当前行为模式进行特定优化的要求。针对现有的程序动态分析技术无法直接获取循环动态... 应用程序中循环部分往往是计算密集型应用的主要工作负载,随着基于FPGA的可重构计算系统的出现,循环的静态分析技术已不能满足可重构计算系统根据程序当前行为模式进行特定优化的要求。针对现有的程序动态分析技术无法直接获取循环动态信息的问题,提出一种循环信息分析算法,根据支配关系在控制流图中识别循环,通过edge profiling的结果分析计算得到循环调用次数、循环平均迭代次数及循环运行时间等关键信息,并在LLVM(Low Level Virtual Machine)平台上实现该算法。实验结果表明,该算法能够自动识别所有循环结构,并对循环部分进行精确分析,分析结果能够为可重构计算系统待加速计算密集型循环的选择提供较全面、精确的信息支持,对程序员进行可重构系统中软硬件划分技术的研究具有重要作用。 展开更多
关键词 计算机系统结构 循环运行时信息 EDGE profiling
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Identification of epididymis-specific transcripts in the mouse and rat by transcriptional profiling 被引量:8
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作者 Daniel S. Johnston Terry T. Turner +3 位作者 Joshua N. Finger Tracy L. Owtscharuk Gregory S. Kopf Scott A. Jelinsky 《Asian Journal of Andrology》 SCIE CAS CSCD 2007年第4期522-527,共6页
As part of our efforts to identify novel contraceptive targets in the epididymis we performed transcriptional profiling on each of the 10 and 19 segments of the mouse and rat epididymidis, respectively, using Affymetr... As part of our efforts to identify novel contraceptive targets in the epididymis we performed transcriptional profiling on each of the 10 and 19 segments of the mouse and rat epididymidis, respectively, using Affymetrix whole genome microarrays. A total of 17 096 and 16 360 probe sets representing transcripts were identified as being expressed in the segmented mouse and rat epididymal transcriptomes, respectively. Comparison of the expressed murine transcripts against a mouse transcriptional profiling database derived from 22 other mouse tissues identified 77 transcripts that were expressed uniquely in the epididymis. The expression of these genes was further evaluated by reverse transcription polymerase chain reaction (RT-PCR) analysis of RNA from 21 mouse tissues. RT-PCR analysis confirmed epididymis-specific expression of Defensin Beta 13 and identified two additional genes with expression restricted only to the epididymis and testis. Comparison of the 16 360 expressed transcripts in the rat epididymis with data of 21 other tissues from a rat transcriptional profiling database identified 110 transcripts specific for the epididymis. Sixty-two of these transcripts were further investigated by qPCR analysis. Only Defensin 22 (E3 epididymal protein) was shown to be completely specific for the epididymis. In addition, 14 transcripts showed more than 100-fold selective expression in the epididymis. The products of these genes might play important roles in epididymal and/or sperm function and further investigation and validation as contraceptive targets are warranted. The results of the studies described in this report are available at the Mammalian Reproductive Genetics (MRG) Database (http://mrg. genetics.washington.edu/). (Asian J Androl 2007July; 9: 522-527) 展开更多
关键词 MOUSE RAT EPIDIDYMIS transcriptional profiling CONTRACEPTION microarray epididymis-specific epididymis-selective
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