Application of the finite analytic numerical method to a flowdependent variational data assimilation

An anisotropic diffusion filter can be used to model a flow-dependent background error covariance matrix,which can be achieved by solving the advection-diffusion equation.Because of the directionality of the advection term,the discrete method needs to be chosen very carefully.The finite analytic method is an alternative scheme to solve the advection-diffusion equation.As a combination of analytical and numerical methods,it not only has high calculation accuracy but also holds the characteristic of the auto upwind.To demonstrate its ability,the one-dimensional steady and unsteady advection-diffusion equation numerical examples are respectively solved by the finite analytic method.The more widely used upwind difference method is used as a control approach.The result indicates that the finite analytic method has higher accuracy than the upwind difference method.For the two-dimensional case,the finite analytic method still has a better performance.In the three-dimensional variational assimilation experiment,the finite analytic method can effectively improve analysis field accuracy,and its effect is significantly better than the upwind difference and the central difference method.Moreover,it is still a more effective solution method in the strong flow region where the advective-diffusion filter performs most prominently.

The Effects of a Hyperinsulinemic-Euglycemic Clamp on Milk Fat Synthesis and the Expression of Fat Synthesis-Related Genes in the Mammary Gland Tissues of Lactating Goats

To determine whether insulin exerts an effect on milk fat yield through the direct regulation of milk fat synthesis in the mammary gland, the hyperinsulinemic-euglycemic clamp procedure was performed in lactating goats in the present study. The effects of the hyperinsulinemic-euglycemic clamp on milk yield, milk composition, milk fatty acid yield and the expression levels of mRNAs of milk fat synthesis-related genes were examined. The results revealed that the hyperinsulinemiceuglycemic clamp had no significant effect on the milk yield, the milk protein yield, the yield and content of lactose or the yield and content of solids-not-fat (SNF) (P > 0.05). In contrast, the milk fat percentage and milk fat yield were decreased by 35.3% and 33.6%, respectively (P < 0.01). Among the 19 fatty acids examined, the yields of 9 fatty acids were significantly reduced (P < 0.05) following the clamp procedure, including C16:0 (hexadecanoic acid), 3 fatty acids derived from blood (>C16) and 5 fatty acids synthesized de novo in the mammary gland ( 0.05), including acetyl-coenzyme A carboxylase (ACC), fatty acid synthase (FAS), fatty acidbinding protein (FABP), lipoprotein lipase (LPL), stearoyl-CoA desaturase (SCD) and glycerol-3-phosphate acyltransferase (GPAT). However, the expression level of the SCD gene was significantly reduced during the post-procedure period (P < 0.05) but returned to a normal level at 48 h after termination of the clamp procedure. It was concluded that the hyperinsulinemic-euglycemic clamp exerted a direct effect on milk fatty acid desaturation.

The photocatalytic performance and active sites of g-C3N4 effected by the coordination doping of Fe(Ⅲ)

Element doping is a simple and effective method to improve photocatalytic activity of g-C3N4. However, the doping model and mechanism of metal elements are still uncharacterized. In this study, we found that Fe(Ⅲ) can be doped into g-C3N4 through the coordination between amidogen and Fe(Ⅲ). After activity tests, it was found that this coordination doping of Fe(Ⅲ) could enhance the Rh B oxidation and Cr(Ⅵ) reduction activities of g-C3N4 in interesting ways, but it is not helpful for the NO-removal performance of g-C3N4. Characterization and calculation results show that the coordination of Fe(Ⅲ) can not only improve the transfer of photogenerated electrons, but it also can passivate the carbon site of triazine rings, which is the active site of NO-removal. This study revealed some doping mechanisms and effect mechanisms of elemental metal in photocatalysis.

Single-Atom Pd–N_(3)Sites on Carbon-Defi cient g-C_(3)N_(4)for Photocatalytic H_(2)Evolution

Photocatalytic hydrogen evolution is an attractive fi eld for future environment-friendly energy.However,fast recombination of photogenerated charges severely inhibits hydrogen effi ciency.Single-atom cocatalysts such as Pt have emerged as an eff ective method to enhance the photocatalytic activity by introduction of active sites and boosting charge separation with low-coordination environment.Herein,we demonstrated a new strategy to develop a highly active Pd single atom in carbondefi cient g-C_(3)N_(4)with a unique coordination.The single-atom Pd–N_(3)sites constructed by oil bath heating and photoreduction process were confi rmed by HADDF-STEM and XPS measurements.Introduction of single-atom Pd greatly improved the separation and transportation of charge carriers,leading to a longer lifespan for consequent reactions.The obtained singleatom Pd loaded on the carbon-defi cient g-C_(3)N_(4)showed excellent photocatalytic activity in hydrogen production with about 24 and 4 times higher activity than that of g-C_(3)N_(4)and nano-sized Pd on the same support,respectively.This work provides a new insight on the design of single-atom catalyst.

Effects of Supplemental Dietary Energy Source on Feed Intake, Lactation Performance, and Serum Indices of Early-Lactating Holstein Cows in a Positive Energy Balance

The present study investigated the effects of the supplemental dietary energy source on early lactating cows in a positive energy balance. Cows in the control group were fed a basal total mixed ration containing high-quality hay as forage, and the dietary concentrate to forage ratio was 45:65. The corn supplementation resulted in a significant decrease in the milk fat content (P P = 0.15), whereas the fat supplementation resulted in a decreasing trend of the milk protein and lactose content (P ≤ 0.1). Additionally, the corn supplementation significantly decreased the serum 5-hydroxytryptamine level (P < 0.05). The results support the proposal that the source of supplemental dietary energy has varying effects on feed intake, lactation performance, and the intermediate metabolism of early lactating cows in a positive energy balance. 5-Hydroxytryptamine secretion may be associated with the varying effects of the source of supplemental dietary energy.

Spatiotemporal variation and mechanisms of temperature inversion in the Bay of Bengal and the eastern equatorial Indian Ocean

In the northern Bay of Bengal,the existence of intense temperature inversion during winter is a widely accepted phenomenon.However,occurrences of temperature inversion during other seasons and the spatial distribution within and adjacent to the Bay of Bengal are not well understood.In this study,a higher resolution spatiotemporal variation of temperature inversion and its mechanisms are examined with mixed layer heat and salt budget analysis utilizing long-term Argo(2004 to 2020)and RAMA(2007 to 2020)profiles data in the Bay of Bengal and eastern equatorial Indian Ocean(EEIO).Temperature inversion exists(17.5%of the total 39293 Argo and 51.6%of the 28894 RAMA profiles)throughout the year in the entire study area.It shows strong seasonal variation,with the highest occurrences in winter and the lowest in spring.Besides winter inversion in the northern Bay of Bengal,two other regions with frequent temperature inversion are identified in this study for the first time:the northeastern part of the Bay of Bengal and the eastern part of the EEIO during summer and autumn.Driving processes of temperature inversion for different subregions are revealed in the current study.Penetration of heat(mean~25 W/m;)below the haline-stratified shallow mixed layer leads to a relatively warmer subsurface layer along with the simultaneous cooling tendency in mixed layer,which controls more occurrence of temperature inversion in the northern Bay of Bengal throughout the year.Comparatively lower cooling tendency due to net surface heat loss and higher mixed layer salinity leaves the southern part of the bay less supportive to the formation of temperature inversion than the northern bay.In the EEIO,slightly cooling tendency in the mixed layer along with the subduction of warm-salty Arabian Sea water beneath the cold-fresher Bay of Bengal water,and downwelling of thermocline creates a favorable environment for forming temperature inversion mainly during summer and autumn.Deeper isothermal layer depth,and thicker barrier layer thickness intensify the temperature inversion both in the Bay of Bengal and EEIO.

Contributions of shortwave radiation to the formation of temperature inversions in the Bay of Bengal and eastern equatorial Indian Ocean:A modeling approach

Variations in incoming shortwave radiation influence the net surface heat flux,contributing to the formation of a temperature inversion.The effects of shortwave radiation on the temperature inversions in the Bay of Bengal and eastern equatorial Indian Ocean have never been investigated.Thus,a high-resolution(horizontal resolution of 0.07°×0.07° with 50 vertical layers) Regional Ocean Modeling System(ROMS) model is utilized to quantify the contributions of shortwave radiation to the temperature inversions in the study domain.Analyses of the mixed layer heat and salt budgets are performed,and different model simulations are compared.The model results suggest that a 30% change in shortwave radiation can change approximately 3% of the temperature inversion area in the Bay of Bengal.Low shortwave radiation reduces the net surface heat flux and cools the mixed layer substantially;it also reduces the evaporation rate,causing less evaporative water vapor losses from the ocean than the typical situation,and ultimately enhances haline stratification.Thus,the rudimentary outcome of this research is that a decrease in shortwave radiation produces more temperature inversion in the study region,which is primarily driven by the net surface cooling and supported by the intensive haline stratification.Moreover,low shortwave radiation eventually intensifies the temperature inversion layer by thickening the barrier layer.This study could be an important reference for predicting how the Indian Ocean climate will respond to future changes in shortwave radiation.

Long-term trend of oceanic surface carbon in the Northwest Pacific from 1958 to 2017

Contrasting decrease and increase trends of sea surface temperature(SST)have been documented in the western Subarctic(WSA)and the rest of the Northwest Pacific(NWP)from 1958 to 2017,respectively.Consequently,more(less)total carbon dioxide(TCO_(2))due to ocean cooling(warming)is transported to the surface,which leads to increase(decrease)of oceanic surface partial pressure of carbon dioxide(pCO_(2)).With the combined influence of the rising atmospheric carbon dioxide(CO_(2))level and changing ocean conditions,a prominent increase in oceanic surface pCO_(2) occurred with different rates of increase in summer and winter in the NWP.The oceanic surface pCO_(2) is mainly controlled by the variation of TCO_(2) at the interdecadal timescale and by SST at the seasonal timescale.Our results also indicate that increasing SST tends to strengthen the capability of ocean in absorbing anthropogenic CO_(2) in the NWP,while ocean’s uptaking ability is weakened in the cooling area of the WSA.

Simulating the influence of various nutrient sources on hypoxia off the Changjiang River Estuary

Hypoxia is increasingly reported off the Changjiang River Estuary with the confluence of multiple high volume nutrient sources.The Regional Ocean Modeling System coupled with a biological model was used to analyze the effect of different nutrient sources on the development of hypoxia off the Changjiang River Estuary.By comparing to observed data,our model suitably captured the regional dynamics of chlorophyll a,dissolved oxygen,and nutrient concentration.A series of sensitivity experiments were conducted to investigate the hypoxia response to the various nutrient sources,such as loading from the Changjiang River,Kuroshio and Taiwan Warm Current.Our model results indicated that nutrients from different sources significantly influenced the hypoxia off the Changjiang River Estuary,and it was mostly affected by nutrients sourced from the Kuroshio.The nutrients input from the Changjiang River had larger impacts on the hypoxia in the north of 30°N than that in the south of 30°N.The nutrients sourced from the Taiwan Strait had a least influence on the hypoxia off the Changjiang River Estuary.

The Effects of Amino Acid Nutritional Deficiency on the Expression of Protein Metabolism-Related Genes in the Mammary Gland and Muscle Tissues of Lactating Mice

The mammary gland tissue exhibits a series of responses that are different from those of muscle and other peripheral tissues under amino acid deficiency. So, this present study was designed to investigate the effects of amino acid nutritional deficiency on the expression of protein metabolism-related genes in the mammary gland and muscle tissues of lactating mice. A total of 60 postpartum, lactating Kunming white mice were selected and randomly divided into 5 groups;each group contained 12 mice. Group A was the control group. The mice in group A were maintained on a normal diet after the initiation of lactation. Group B (starved) was given normal saline via intragastric administration. Group C (energy) was given glucose solution via intragastric administration. Groups D and E received a sodium caseinate solution via intragastric administration, which provided 0.5 g protein/d and 1.5 g protein/d, respectively. The results showed the following. 1) When the mice were exposed to nutritional stress caused by dietary amino acid deficiency, the β-casein mRNA expression level was increased in the mammary gland tissue. The increase in β-casein expression was the most significant in the energy-supplemented group, followed by the starved group (P P 14k and C2 (P P P < 0.05). 5) The phosphorylation level of p70S6K was elevated in the muscle tissues collected from the treatment groups. However, the magnitude of the increase was far smaller compared to that in the mammary gland tissues.

Preparation of a polyclonal antibody against immunogenic fragment of bovine intestinal peptide transporter I (<i>b</i>PepTI)

The goal of the current study is to prepare polyclonal antibody against bovine intestinal peptide transporter I (bPepTI) in order to develop assay for immunological assessment of protein levels. Antigenicity of the entire bPepTI was analyzed with DNAStar, and a fragment with high antigenicity (bPepTI ORF 1369 - 1695) was selected, cloned in pGEX-6p-1 vector, resulting in a recombinant plasmid GST-BP, which verified by double enzyme digestion and sequenced, the recombinant plasmid was introduced to BL21. Exogenous expression was induced by IPTG and validated by Western blot analysis. The recombinant protein was isolated, purified and used for production of antiserum in mice. The specificity of antiserum was evaluated with immunobloting and titer was estimated with ELISA. Results indicate that the antibody against bPepTI was produced. The optimal GST-BP antigen embedding concentration was 0.5 μg/ml. The optimal dilution was 1:400. An indirect ELISA assay indicates the effective dilution was 1:102400.

Modulation of photocatalytic activity of SrBi_(2)Ta_(2)O_(9)nanosheets in NO removal by tuning facets exposure

Photocatalysts with exposure of different crystal facets often show great differences in their photocatalytic activities due to differences in surface atomic arrangement and coordination.Thus,the actual photoreaction mechanism of a specific crystal facet in photocatalysis deserves to be explored.In this paper,as a case study,Sr Bi_(2)Ta_(2)O_(9)photocatalyst with preferential facet exposure was explored for the photocatalytic removal of NO at a ppb level.The efficiency of NO removal was remarkably improved by tuning the crystal exposure facet with high(200)facet exposure ratio.Optimized exposure of(200)crystal facet in Sr Bi_(2)Ta_(2)O_(9)(SBT)by thermal calcination at 800℃(SBT-800)leads to the highest NO removal activity of51%under a 300 W Xe lamp for 20 min;under visible light,SBT 800 achieves a 5-fold enhancement in NO removal efficiency compared to its counterpart,SBT-900.Active species capture experiments prove that the superoxide radical·O_(2)-is the main active species for the photocatalytic removal of NO,and surface selective deposition experiments conclude that(200)is the main electron-rich crystal plane,based on which the results of density functional theory(DFT)computation reveal the Bi O terminated nature of(001)crystal plane,where the models with both Bi O and Ta O terminated(001)planes were created and computated.Mechanistic study reveals that Sr Bi_(2)Ta_(2)O_(9)with a larger exposure of(200)facet provides more active reduction sites,thereby reducing more O_(2)to·O_(2)-,which further oxidizes the adsorbed NO to NO_(2)-/NO_(3)-.The present work underlines the role of facet tuning in the photoactivity modulation for NO removal photocatalytically.

Protein Interactome Analysis for Countering Pathogen Drug Resistance

Drug-resistant varieties of pathogens are now a recognized global threat. Insights into the routes for drug resistance in these pathogens are critical for developing more effective antibacterial drugs. A systems-level analysis of the genes, proteins, and interactions involved is an important step to gaining such insights. This paper discusses some of the computational challenges that must be surmounted to enable such an analysis; viz., unreliability of bacterial interactome maps, paucity of bacterial interactome maps, and identification of pathways to bacterial drug resistance.