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Heterogeneous population distribution enhances resistance to wheat lodging by optimizing the light environment
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作者 yibo hu Feng Qin +6 位作者 Zhen Wu Xiaoqin Wang Xiaolong Ren Zhikuan Jia Zhenlin Wang Xiaoguang Chen Tie Cai 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2024年第7期2211-2226,共16页
Lodging is still the key factor that limits continuous increases in wheat yields today,because the mechanical strength of culms is reduced due to low-light stress in populations under high-yield cultivation.The mechan... Lodging is still the key factor that limits continuous increases in wheat yields today,because the mechanical strength of culms is reduced due to low-light stress in populations under high-yield cultivation.The mechanical properties of the culm are mainly determined by lignin,which is affected by the light environment.However,little is known about whether the light environment can be sufficiently improved by changing the population distribution to inhibit culm lodging.Therefore,in this study,we used the wheat cultivar“Xinong 979”to establish a low-density homogeneous distribution treatment(LD),high-density homogeneous distribution treatment(HD),and high-density heterogeneous distribution treatment(HD-h)to study the regulatory effects and mechanism responsible for differences in the lodging resistance of wheat culms under different population distributions.Compared with LD,HD significantly reduced the light transmittance in the middle and basal layers of the canopy,the net photosynthetic rate in the middle and lower leaves of plants,the accumulation of lignin in the culm,and the breaking resistance of the culm,and thus the lodging index values increased significantly,with lodging rates of 67.5%in 2020–2021 and 59.3%in 2021–2022.Under HD-h,the light transmittance and other indicators in the middle and basal canopy layers were significantly higher than those under HD,and the lodging index decreased to the point that no lodging occurred.Compared with LD,the activities of phenylalanine ammonia-Lyase(PAL),4-coumarate:coenzyme A ligase(4CL),catechol-O-methyltransferase(COMT),and cinnamyl-alcohol dehydrogenase(CAD)in the lignin synthesis pathway were significantly reduced in the culms under HD during the critical period for culm formation,and the relative expression levels of TaPAL,Ta4CL,TaCOMT,and TaCAD were significantly downregulated.However,the activities of lignin synthesis-related enzymes and their gene expression levels were significantly increased under HD-h compared with HD.A partial least squares path modeling analysis found significant positive effects between the canopy light environment,the photosynthetic capacity of the middle and lower leaves of plants,lignin synthesis and accumulation,and lodging resistance in the culms.Thus,under conventional high-density planting,the risk of wheat lodging was significantly higher.Accordingly,the canopy light environment can be optimized by changing the heterogeneity of the population distribution to improve the photosynthetic capacity of the middle and lower leaves of plants,promote lignin accumulation in the culm,and enhance lodging resistance in wheat.These findings provide a basis for understanding the mechanism responsible for the lower mechanical strength of the culm under high-yield wheat cultivation,and a theoretical basis and for developing technical measures to enhance lodging resistance. 展开更多
关键词 canopy light environment LIGNIN LODGING population distribution WHEAT
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Comparisons of phaseolin type and α-amylase inhibitor in common bean(Phaseolus vulgaris L.)in China 被引量:4
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作者 Yang Yao yibo hu +2 位作者 Yingying Zhu Yue Gao Guixing Ren 《The Crop Journal》 SCIE CAS CSCD 2016年第1期68-72,共5页
The objective of this study was to characterize the phaseolin type and a-amylase(αAI) level in common bean(Phaseolus vidgaris L.) accessions deposited in the Chinese National Genebank.The 40 accessions sampled were c... The objective of this study was to characterize the phaseolin type and a-amylase(αAI) level in common bean(Phaseolus vidgaris L.) accessions deposited in the Chinese National Genebank.The 40 accessions sampled were common varieties originating in Asia,North America,South America,Europe,and Africa.No Inca(I-) phaseolin was observed in the accessions.Only four accessions contained Tendergreen(T-) phaseolin and the remaining36 contained Sanilac(S-) phaseolin.aAI proteins extracted from nine accessions showed higher a-amylase inhibitory activity than the control(Phase 2,IC_(50) = 0.65 μg).These common bean accessions have potential use as nutraceutical ingredients. 展开更多
关键词 COMMON BEAN Phaseolin Α-AMYLASE INHIBITOR PHENOLIC ACID
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Genome of a citrus rootstock and global DNA demethylation caused by heterografting 被引量:6
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作者 Yue huang Yuantao Xu +8 位作者 Xiaolin Jiang huiwen Yu huihui Jia Chunming Tan Gang hu yibo hu Muhammad Junaid Rao Xiuxin Deng Qiang Xu 《Horticulture Research》 SCIE 2021年第1期1166-1178,共13页
Grafting is an ancient technique used for plant propagation and improvement in horticultural crops for at least 1,500 years.Citrus plants,with a seed-to-seed cycle of 5–15 years,are among the fruit crops that were pr... Grafting is an ancient technique used for plant propagation and improvement in horticultural crops for at least 1,500 years.Citrus plants,with a seed-to-seed cycle of 5–15 years,are among the fruit crops that were probably domesticated by grafting.Poncirus trifoliata,a widely used citrus rootstock,can promote early flowering,strengthen stress tolerance,and improve fruit quality via scion–rootstock interactions.Here,we report its genome assembly using PacBio sequencing.We obtained a final genome of 303 Mb with a contig N50 size of 1.17Mb and annotated 25,680 protein-coding genes.DNA methylome and transcriptome analyses indicated that the strong adaptability of P.trifoliata is likely attributable to its special epigenetic modification and expression pattern of resistance-related genes.Heterografting by using sweet orange as scion and P.trifoliata as rootstock and autografting using sweet orange as both scion and rootstock were performed to investigate the genetic effects of the rootstock.Single-base methylome analysis indicated that P.trifoliata as a rootstock caused DNA demethylation and a reduction in 24-nt small RNAs(sRNAs)in scions compared to the level observed with autografting,implying the involvement of sRNA-mediated graft-transmissible epigenetic modifications in citrus grafting.Taken together,the assembled genome for the citrus rootstock and the analysis of graft-induced epigenetic modifications provide global insights into the genetic effects of rootstock–scion interactions and grafting biology. 展开更多
关键词 ORANGE CROPS STOCK
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The effect of atmospheric pressure glow discharge plasma treatment on the dyeing properties of silk fabric
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作者 Cheng FENG yibo hu +3 位作者 Chenggang JIN Lanjian ZhuGE Xuemei WU Wenli WANG 《Plasma Science and Technology》 SCIE EI CAS CSCD 2020年第1期80-86,共7页
In this study,the effects of plasma treatment parameters on surface morphology,chemical constituent,dycabiliiy and color fastness of silk fabric were investigated.Atmospheric pressure glow discharge plasma generated w... In this study,the effects of plasma treatment parameters on surface morphology,chemical constituent,dycabiliiy and color fastness of silk fabric were investigated.Atmospheric pressure glow discharge plasma generated with different applied voltages(0 kV to 45 kV)was used to treat the surface of silk fabrics.C I Natural Yellow 3 was used to dye untreated and plasma-treated silk fabrics.The physical analysis based on scanning electron microscopy showed that the surface of silk fabrics was affected by plasma treatment.The chemical analysis was investigated with x-ray photi>elcctron spectroscopy and attenuated total reflection Fourier transform infrared spectroscopy.The results showed that the content of C Is decreased with the increasing applied voltage,the content of N Is and O Is increased with the increasing applied voltage.The increasing K/S values represented that the dyeability of silk fabrics was improved after plasma treatment.The color fastness to dry and wet rubbing was decreased after plasma treatment. 展开更多
关键词 APGD plasma silk fabric surface treatment natural dye DYEABILITY
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Evaluation of a resoruf in-based fluorescent probe for tyrosinase detection in skin pigmentation disorders
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作者 yibo hu Hongliang Zeng +4 位作者 Jiaxing Jiang Sheng Yang Jinhua huang Jing Chen Qinghai Zeng 《Bio-Design and Manufacturing》 SCIE EI CSCD 2021年第4期806-817,共12页
Purpose Skin pigmentation disorders,such as vitiligo and melasma,are difficult to diagnose in the early stages,but abnor-mal tyrosinase levels and tyrosinase activity are potential indicators.Some resorufin-based fluo... Purpose Skin pigmentation disorders,such as vitiligo and melasma,are difficult to diagnose in the early stages,but abnor-mal tyrosinase levels and tyrosinase activity are potential indicators.Some resorufin-based fluorescence probes(RBFPs)have been designed to detect tyrosinase in tumors,but they have not been used in skin pigmentation disorders.In this study,one of these RBFPs(synthesized by resorufin salt coupled with 3-(bromomethyl)phenol)was evaluated comprehensively.Methods The RBFP was tested in different kinds of mouse and human skin cells,as well as in in vivo models,including zebrafish,guinea pigs,and Sprague-Dawley rats.In addition,small interfering RNAs(siRNAs),kojic acid,and 1-phenyl-2-thiourea(PTU)were used to inhibit tyrosinase levels or tyrosinase activity.Results This probe successfully detected tyrosinase and emitted red fluorescence in melanoma cells and melanocytes.Fluorescence was also observable in zebrafish and on the skin of guinea pigs when using the RBFP.In mouse and human cells,the RBFP showed good selectivity to tyrosinase.Moreover,in the case of decreased tyrosinase levels or activity caused by siRNAs,kojic acid,or PTU,the probe was sensitive to these changes.Further,the RBFP showed no toxic effects at concentrations of<20μmol/L,both in vitro and in vivo.Conclusions Our findings indicate the value and limitations of the RBFP in tyrosinase detection,but suggest the need for further improvement of fluorescent probes in the diagnosis of skin pigmentation disorders. 展开更多
关键词 TYROSINASE Pigmentation disorder DIAGNOSIS Fluorescence probe
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Production Mode and Economic Benefit of Improved No-tillage Intercropping with Potato in New Mode Citrus Orchard
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作者 Yanjun GUO yibo hu +4 位作者 Qianhua JI Liying GUO hui JIANG Fengmei YANG Xianwei CAO 《Asian Agricultural Research》 2020年第9期51-57,共7页
[Objectives]In terms of increasing the utilization of land in agriculture and the per unit area yield,intercropping is the most popular farming method.[Methods]Based on the climate and soil conditions in Zhaoqing,this... [Objectives]In terms of increasing the utilization of land in agriculture and the per unit area yield,intercropping is the most popular farming method.[Methods]Based on the climate and soil conditions in Zhaoqing,this experiment explored the improved mode of no-tillage intercropping winter potato with citrus in the new high-ridge,wide-row and dense-plant cultivation mode citrus orchard.Taking the conventional tillage and film-mulched intercropping as the control,it studied the adaptability of intercropping,evaluated the quality,and analyzed its economic benefits.[Results]The early emergence rate of improved no-tillage intercropping cultivation was slightly higher than that of conventional tillage and film-mulched intercropping,but the difference of final emergence rate was not significant,indicating that improved no-tillage intercropping cultivation could provide excellent potato emergence environment.Under the conventional tillage and improved no-tillage intercropping cultivation mode,the change trend of the potato's plant height,main stem thickness,crown diameter and number of leaflet is the same.The change rule of the crown diameter of the film-mulched intercropping cultivation method is similar to that of the plant height,both have a large increase in the late growth stage.The potato yield of improved no-tillage intercropping cultivation were 22747.5 kg/ha,and the proportions of potatoes of each grade were 11.85%,35.61%,37.63%and 14.91%,respectively.The content of dry matter,Vc,soluble protein,starch and amino acid in the main nutrients of the potato under the improved no-tillage intercropping mode is not significantly different from that of the film-mulched intercropping cultivation.The changing trend of reducing sugar content showed that the reducing sugar content of no-tillage intercropping cultivation was the highest(0.466%).Through evaluating the eating characteristics of potatoes from the flavor,taste,texture and appearance after chewing,the three cultivation methods have little difference.In the no-tillage intercropping cultivation technology,the growth of potatoes consumes part of the nutrients in the soil between the rows of the citrus orchard,but it does not exerts a significant impact on the surrounding citrus trees.Compared with the film-mulched intercropping cultivation,the improved no-tillage intercropping cultivation method does not require the expense of mulched,the cost of fertilizer is low,and labor costs are saved,so a net income of 27075 yuan/ha can be obtained.[Conclusions]From the perspective of orchard intercropping,it has achieved the effect of improving soil utilization and increasing output without reducing the edible quality of potatoes. 展开更多
关键词 Citrus orchard INTERCROPPING POTATO MODE Economic benefits
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Geographical patterns and determinants of insect biodiversity in China
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作者 huizhong Fan Tongyi Liu +5 位作者 Youhua Chen Ziyan Liao Jun Chen yibo hu Gexia Qiao Fuwen Wei 《Science China(Life Sciences)》 SCIE CAS CSCD 2024年第6期1255-1265,共11页
Insects play important roles in the maintenance of ecosystem functioning and the provision of livelihoods for millions of people.However,compared with terrestrial vertebrates and angiosperms,such as the giant panda,cr... Insects play important roles in the maintenance of ecosystem functioning and the provision of livelihoods for millions of people.However,compared with terrestrial vertebrates and angiosperms,such as the giant panda,crested ibis,and the metasequoia,insect conservation has not attracted enough attention,and a basic understanding of the geographical biodiversity patterns for major components of insects in China is lacking.Herein,we investigated the geographical distribution of insect biodiversity across multiple dimensions(taxonomic,genetic,and phylogenetic diversity)based on the spatial distribution and molecular DNA sequencing data of insects.Our analysis included 18 orders,360 families,5,275 genera,and 14,115 species of insects.The results revealed that Southwestern and Southeastern China harbored higher insect biodiversity and numerous older lineages,representing a museum,whereas regions located in Northwestern China harbored lower insect biodiversity and younger lineages,serving as an evolutionary cradle.We also observed that mean annual temperature and precipitation had significantly positive effects,whereas altitude had significantly negative effects on insect biodiversity in most cases.Moreover,cultivated vegetation harbored the highest insect taxonomic and phylogenetic diversity,and needleleaf and broadleaf mixed forests harbored the highest insect genetic diversity.These results indicated that human activities may positively contribute to insect spatial diversity on a regional scale.Our study fills a knowledge gap in insect spatial diversity in China.These findings could help guide national-level conservation plans and the post-2020 biodiversity conservation framework. 展开更多
关键词 insect spatial patterns multiple dimensions driving factors vegetation types
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fcl基因对须糖多孢菌丁烯基多杀菌素生物合成及生长发育的影响 被引量:5
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作者 彭胜男 何昊城 +8 位作者 苑爽芹 穰杰 胡胜标 孙运军 余子全 黄伟涛 胡益波 丁学知 夏立秋 《生物工程学报》 CAS CSCD 北大核心 2019年第9期1662-1675,共14页
fcl基因编码的GDP-岩藻糖合成酶(GDP fucose synthetase,GFS),能催化由GDP-D-甘露糖合成GDP-L-岩藻糖过程中的两步差向异构酶和还原酶反应;还参与氨基糖和核糖的生物合成,是调控生物体糖代谢、核苷酸代谢的关键酶之一。通过前期基因组... fcl基因编码的GDP-岩藻糖合成酶(GDP fucose synthetase,GFS),能催化由GDP-D-甘露糖合成GDP-L-岩藻糖过程中的两步差向异构酶和还原酶反应;还参与氨基糖和核糖的生物合成,是调控生物体糖代谢、核苷酸代谢的关键酶之一。通过前期基因组测序表明须糖多孢菌Saccharopolyspora pogona中存在fcl基因。利用基因工程技术构建了fcl基因的过表达菌株S. pogona-fcl和敲除菌株S. pogona-Δfcl。结果表明该基因对菌株生长发育、蛋白表达及其转录水平、杀虫活性、丁烯基多杀菌素的生物合成均存在影响。经HPLC分析显示,S. pogona-Δfcl的丁烯基多杀菌素产量增加为野生型菌株的130%,S.pogona-fcl的丁烯基多杀菌素产量降低了25%。生测结果显示,与野生型菌株相比S.pogona-Δfcl对棉铃虫的杀虫活性明显增强,而S.pogona-fcl的杀虫活性降低。利用扫描电镜观察发现,S. pogona-Δfcl菌丝体表面出现褶皱,呈现短棒状,S. pogona-fcl菌丝形态与野生型菌株一致。以上结果表明,fcl基因的敲除影响菌丝体的生长发育,能促进丁烯基多杀菌素的生物合成和增强杀虫活性,该基因的过表达抑制了丁烯基多杀菌素的生物合成和降低了杀虫活性。SDS-PAGE结果表明,三株菌株在96 h时蛋白表达差异最为明显。对差异蛋白通过实时荧光定量聚合酶链式反应结果显示,三菌株蛋白的转录水平存在显著表达差异。通过研究结果构建了网络代谢调控图,分析fcl基因对须糖多孢菌生长发育及丁烯基多杀菌素生物合成代谢调控网络途径的影响,初步构建了fcl基因调控的代谢途径,为揭示丁烯基多杀菌素生物合成的调控机制及相关后续研究提供了实验依据。 展开更多
关键词 须糖多孢菌 丁烯基多杀菌素 fcl基因 生物合成 生长发育
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Molecular mechanisms of adaptive evolution in wild animals and plants 被引量:13
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作者 yibo hu Xiaoping Wang +11 位作者 Yongchao Xu hui Yang Zeyu Tong Ran Tian Shaohua Xu Li Yu Yalong Guo Peng Shi Shuangquan huang Guang Yang Suhua Shi Fuwen Wei 《Science China(Life Sciences)》 SCIE CAS CSCD 2023年第3期453-495,共43页
Wild animals and plants have developed a variety of adaptive traits driven by adaptive evolution,an important strategy for species survival and persistence.Uncovering the molecular mechanisms of adaptive evolution is ... Wild animals and plants have developed a variety of adaptive traits driven by adaptive evolution,an important strategy for species survival and persistence.Uncovering the molecular mechanisms of adaptive evolution is the key to understanding species diversification,phenotypic convergence,and inter-species interaction.As the genome sequences of more and more non-model organisms are becoming available,the focus of studies on molecular mechanisms of adaptive evolution has shifted from the candidate gene method to genetic mapping based on genome-wide scanning.In this study,we reviewed the latest research advances in wild animals and plants,focusing on adaptive traits,convergent evolution,and coevolution.Firstly,we focused on the adaptive evolution of morphological,behavioral,and physiological traits.Secondly,we reviewed the phenotypic convergences of life history traits and responding to environmental pressures,and the underlying molecular convergence mechanisms.Thirdly,we summarized the advances of coevolution,including the four main types:mutualism,parasitism,predation and competition.Overall,these latest advances greatly increase our understanding of the underlying molecular mechanisms for diverse adaptive traits and species interaction,demonstrating that the development of evolutionary biology has been greatly accelerated by multi-omics technologies.Finally,we highlighted the emerging trends and future prospects around the above three aspects of adaptive evolution. 展开更多
关键词 adaptive evolution adaptive trait coevolution comparative genomics convergent evolution genetic convergence molecular mechanism MUTUALISM PARASITISM phenotype convergence
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Conservation metagenomics: a new branch of conservation biology 被引量:20
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作者 Fuwen Wei Qi Wu +3 位作者 yibo hu Guangping huang Yonggang Nie Li Yan 《Science China(Life Sciences)》 SCIE CAS CSCD 2019年第2期168-178,共11页
Multifaceted approaches are required to monitor wildlife populations and improve conservation efforts. In the last decade,increasing evidence suggests that metagenomic analysis offers valuable perspectives and tools f... Multifaceted approaches are required to monitor wildlife populations and improve conservation efforts. In the last decade,increasing evidence suggests that metagenomic analysis offers valuable perspectives and tools for identifying microbial communities and functions. It has become clear that gut microbiome plays a critical role in health, nutrition, and physiology of wildlife, including numerous endangered animals in the wild and in captivity. In this review, we first introduce the human microbiome and metagenomics, highlighting the importance of microbiome for host fitness. Then, for the first time, we propose the concept of conservation metagenomics, an emerging subdiscipline of conservation biology, which aims to understand the roles of the microbiota in evolution and conservation of endangered animals. We define what conservation metagenomics is along with current approaches, main scientific issues and significant implications in the study of host evolution, physiology,nutrition, ecology and conservation. We also discuss future research directions of conservation metagenomics. Although there is still a long way to go, conservation metagenomics has already shown a significant potential for improving the conservation and management of wildlife. 展开更多
关键词 MICROBIOME CONSERVATION BIOLOGY CONSERVATION METAGENOMICS ENDANGERED ANIMAL
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Diet drives convergent evolution of gut microbiomes in bamboo-eating species 被引量:12
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作者 Guangping huang Xiao Wang +6 位作者 yibo hu Qi Wu Yonggang Nie Jiuhong Dong Yun Ding Li Yan Fuwen Wei 《Science China(Life Sciences)》 SCIE CAS CSCD 2021年第1期88-95,共8页
Gut microbiota plays a critical role in host physiology and health.The coevolution between the host and its gut microbes facilitates animal adaptation to its specific ecological niche.Multiple factors such as host die... Gut microbiota plays a critical role in host physiology and health.The coevolution between the host and its gut microbes facilitates animal adaptation to its specific ecological niche.Multiple factors such as host diet and phylogeny modulate the structure and function of gut microbiota.However,the relative contribution of each factor in shaping the structure of gut microbiota remains unclear.The giant(Ailuropoda melanoleuca)and red(Ailurus styani)pandas belong to different families of order Carnivora.They have evolved as obligate bamboo-feeders and can be used as a model system for studying the gut microbiome convergent evolution.Here,we compare the structure and function of gut microbiota of the two pandas with their carnivorous relatives using 16S rRNA and metagenome sequencing.We found that both panda species share more similarities in their gut microbiota structure with each other than each species shares with its carnivorous relatives.This indicates that the specialized herbivorous diet rather than host phylogeny is the dominant driver of gut microbiome convergence within Arctoidea.Metagenomic analysis revealed that the symbiotic gut microbiota of both pandas possesses a high level of starch and sucrose metabolism and vitamin B12 biosynthesis.These findings suggest a diet-driven convergence of gut microbiomes and provide new insight into host-microbiota coevolution of these endangered species. 展开更多
关键词 gut microbiome METAGENOME convergent evolution starch and sucrose metabolism vitamin B12 giant panda red panda
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Seasonal and reproductive variation in chemical constituents of scent signals in wild giant pandas 被引量:6
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作者 Wenliang Zhou Yonggang Nie +4 位作者 yibo hu Ronald R.Swaisgood Yaohua Zhang Dingzhen Liu Fuwen Wei 《Science China(Life Sciences)》 SCIE CAS CSCD 2019年第5期648-660,共13页
Seasonally reproducing animals show many behavioral and physiological changes during the mating period, including increased signaling for intrasexual competition and mate attraction. We collected 102 anogenital gland ... Seasonally reproducing animals show many behavioral and physiological changes during the mating period, including increased signaling for intrasexual competition and mate attraction. We collected 102 anogenital gland secretions(AGS) from marking trees in Foping Nature Reserve, and used gas chromatography mass spectrometry to analyze these chemical composition. Of these marks, all but one were from males, confirmed with DNA analysis. We found that several chemical constituents, especially volatile compounds, were present only during the mating season and that the relative abundance of many compounds changed as a function of breeding season, whereas nonvolatile compounds were lower in the mating season. This seasonal variation in chemical composition of AGS most likely plays an important role in governing giant panda reproduction, including mate location, attraction, and male-male competition. The chemical properties of many of these putative chemosignals—such as volatility and longevity—are suggestive of these roles, and undoubtedly contribute to successful reproduction for this species with a characteristically sophisticated chemical communication system. We also found a number of important differences between the chemical constituents of AGS from wild pandas and those found in previous studies with captive pandas, suggesting that inappropriate chemosignal composition may contribute to poor reproductive success in captive breeding programs. 展开更多
关键词 giant panda CHEMICAL communication anogenital GLAND SECRETIONS CHEMICAL composition reproduction
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Noninvasive genetics provides insights into the population size and genetic diversity of an Amur tiger population in China 被引量:4
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作者 Dan WANG yibo hu +3 位作者 Tianxiao MA Yonggang NIE Yan XIE Fuwen WEI 《Integrative Zoology》 SCIE CSCD 2016年第1期16-24,共9页
Understanding population size and genetic diversity is critical for effective conservation of endangered species.The Amur tiger(Panthera tigris altaica)is the largest felid and a flagship species for wildlife conserva... Understanding population size and genetic diversity is critical for effective conservation of endangered species.The Amur tiger(Panthera tigris altaica)is the largest felid and a flagship species for wildlife conservation.Due to habitat loss and human activities,available habitat and population size are continuously shrinking.However,little is known about the true population size and genetic diversity of wild tiger populations in China.In this study,we collected 55 fecal samples and 1 hair sample to investigate the population size and genetic diversity of wild Amur tigers in Hunchun National Nature Reserve,Jilin Province,China.From the samples,we determined that 23 fecal samples and 1 hair sample were from 7 Amur tigers:2 males,4 females and 1 individual of unknown sex.Interestingly,2 fecal samples that were presumed to be from tigers were from Amur leopards,highlighting the significant advantages of noninvasive genetics over traditional methods in studying rare and elusive animals.Analyses from this sample suggested that the genetic diversity of wild Amur tigers is much lower than that of Bengal tigers,consistent with previous findings.Furthermore,the genetic diversity of this Hunchun population in China was lower than that of the adjoining subpopulation in southwest Primorye Russia,likely due to sampling bias.Considering the small population size and relatively low genetic diversity,it is urgent to protect this endangered local subpopulation in China. 展开更多
关键词 FELID genetic diversity noninvasive genetics Panthera tigris altaica population size
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Quantifying landscape linkages among giant panda subpopulations in regional scale conservation 被引量:3
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作者 Dunwu QI yibo hu +3 位作者 Xiaodong GU Xuyi YANG Guang YANG Fuwen WEI 《Integrative Zoology》 SCIE CSCD 2012年第2期165-174,共10页
Understanding habitat requirements and identifying landscape linkages are essential for the survival of isolat­ed populations of endangered species.Currently,some of the giant panda populations are isolated,which... Understanding habitat requirements and identifying landscape linkages are essential for the survival of isolat­ed populations of endangered species.Currently,some of the giant panda populations are isolated,which threat­ens their long-term survival,particularly in the Xiaoxiangling mountains.In the present study,we quantified niche requirements and then identified potential linkages of giant panda subpopulations in the most isolated re­gion,using ecological niche factor analysis and a least-cost path model.Giant pandas preferred habitat with co­nifer forest and gentle slopes(>20 to≤30°).Based on spatial distribution of suitable habitat,linkages were iden­tified for the Yele subpopulation to 4 other subpopulations(Liziping,Matou,Xinmin and Wanba).Their lengths ranged from 15 to 54 km.The accumulated cost ranged from 693 to 3166 and conifer forest covered over 31%.However,a variety of features(e.g.major roads,human settlements and large unforested areas)might act as barriers along the linkages for giant panda dispersal.Our analysis quantified giant panda subpopulation connec­tivity to ensure long-term survival. 展开更多
关键词 Ailuropoda melanoleuca ecological niche factor analysis giant panda landscape connectivity least-cost path analysis species conservation
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Global patterns of phylogenetic diversity and transmission of bat coronavirus 被引量:2
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作者 Zhilin Wang Guangping huang +4 位作者 Mingpan huang Qiang Dai yibo hu Jiang Zhou Fuwen Wei 《Science China(Life Sciences)》 SCIE CAS CSCD 2023年第4期861-874,共14页
Bats are reservoirs for multiple coronaviruses(Co Vs).However,the phylogenetic diversity and transmission of global bat-borne Co Vs remain poorly understood.Here,we performed a Bayesian phylogeographic analysis based ... Bats are reservoirs for multiple coronaviruses(Co Vs).However,the phylogenetic diversity and transmission of global bat-borne Co Vs remain poorly understood.Here,we performed a Bayesian phylogeographic analysis based on 3,594 bat Co V Rd Rp gene sequences to study the phylogenetic diversity and transmission of bat-borne Co Vs and the underlying driving factors.We found that host-switching events occurred more frequently forα-Co Vs than forβ-Co Vs,and the latter was highly constrained by bat phylogeny.Bat species in the families Molossidae,Rhinolophidae,Miniopteridae,and Vespertilionidae had larger contributions to the cross-species transmission of bat Co Vs.Regions of eastern and southern Africa,southern South America,Western Europe,and Southeast Asia were more frequently involved in cross-region transmission events of bat Co Vs than other regions.Phylogenetic and geographic distances were the most important factors limiting Co V transmission.Bat taxa and global geographic hotspots associated with bat Co V phylogenetic diversity were identified,and bat species richness,mean annual temperature,global agricultural cropland,and human population density were strongly correlated with the phylogenetic diversity of bat Co Vs.These findings provide insight into bat Co Vevolution and ecological transmission among bat taxa.The identified hotspots of bat Co V evolution and transmission will guide early warnings of bat-borne Co V zoonotic diseases. 展开更多
关键词 BAT CORONAVIRUS ecological transmission phylogenetic diversity driving factors
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Conservation genetics and genomics of threatened vertebrates in China 被引量:1
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作者 huizhong Fan yibo hu +3 位作者 Qi Wu Yonggang Nie Li Yan Fuwen Wei 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2018年第11期593-601,共9页
Conservation genetics and genomics are two independent disciplines that focus on using new techniques in genetics and genomics to solve problems in conservation biology. During the past two decades,conservation geneti... Conservation genetics and genomics are two independent disciplines that focus on using new techniques in genetics and genomics to solve problems in conservation biology. During the past two decades,conservation genetics and genomics have experienced rapid progress. Here, we summarize the research advances in the conservation genetics and genomics of threatened vertebrates(e.g., carnivorans, primates, ungulates, cetaceans, avians, amphibians and reptiles) in China. First, we introduce the concepts of conservation genetics and genomics and their development. Second, we review the recent advances in conservation genetics research, including noninvasive genetics and landscape genetics. Third, we summarize the progress in conservation genomics research, which mainly focuses on resolving genetic problems relevant to conservation such as genetic diversity, genetic structure, demographic history, and genomic evolution and adaptation. Finally, we discuss the future directions of conservation genetics and genomics. 展开更多
关键词 Conservation genetics Conservation genomics Threatened species ADAPTATION EVOLUTION
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Design of phase interface and defect in niobium-nickel oxide for ultrafast Li-ion storage 被引量:1
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作者 Haiting Chen Haoyan Cheng +5 位作者 Hangchen Liu yibo hu Tongtong Yuan Shuge Dai Meilin Liu Hao hu 《Journal of Materials Science & Technology》 SCIE EI CAS CSCD 2023年第16期145-152,共8页
Niobium pentoxide(Nb2O5)has attracted much attention in lithium batteries due to its advantages of high operating voltage,large theoretical capacity,environmental friendliness and cost-effectiveness.However,the intrin... Niobium pentoxide(Nb2O5)has attracted much attention in lithium batteries due to its advantages of high operating voltage,large theoretical capacity,environmental friendliness and cost-effectiveness.However,the intrinsic poor electrical conductivity,sluggish kinetics,and large volume changes hinder its electrochemical performance at high power density,making it away from the requirements for practical applications.In this research work,we regulate the electron transport of niobium-nickel oxide(NiNbO)anode material with enhanced structural stability at high power density by constructing the two-phase boundaries between niobium pentoxide(Nb2O5)and nickel niobate(NiNb2O6)through simple solid phase reaction.In addition,the presence of lattice defects in NiNbO-F further speeds up the transport of Li+and promotes the electrochemical reaction kinetics more effectively.The two-phase boundaries and defect modulated anode material displays high Li+diffusion coefficient of 1.63×10^(−10) cm^(2) s^(−1),pretty high initial discharge capacity of 222.8 mAh g^(−1) at 1 C,extraordinary high rate performance(66.7 mAh g^(−1))at an ultrahigh rate(100 C)and ultra-long cycling stability under high rate of 25 C(83.4 mAh g^(−1) after 2000 cycles)with only 0.016%attenuation per cycle.These results demonstrate an effective approach for developing electrode materials that greatly improve rate performance and durability. 展开更多
关键词 Niobium oxide Phase interface DEFECTS Rate performance Lithium-ion batteries
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Synteny search identifies carnivore Y chromosome for evolution of male specific genes 被引量:1
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作者 huizhong FAN yibo hu +5 位作者 Lei SHAN Lijun YU Bing WANG Min LI Qi WU Fuwen WEI 《Integrative Zoology》 SCIE CSCD 2019年第3期224-234,共11页
The explosive accumulation of mammalian genomes has provided a valuable resource to characterize the evo­lution of the Y chromosome.Unexpectedly,the Y-chromosome sequence has been characterized in only a small ha... The explosive accumulation of mammalian genomes has provided a valuable resource to characterize the evo­lution of the Y chromosome.Unexpectedly,the Y-chromosome sequence has been characterized in only a small handful of species,with the majority being model organisms.Thus,identification of Y-linked scaffolds from un­ordered genome sequences is becoming more important.Here,we used a syntenic-based approach to generate the scaffolds of the male-specific region of the Y chromosome(MSY)from the genome sequence of 6 male car­nivore species.Our results identified 14,15,9,28,14 and 11 Y-linked scaffolds in polar bears,pacific walruses,red pandas,cheetahs,ferrets and tigers,covering 1.55 Mbp,2.62 Mbp,964 Kb,1.75 Mb,2.17 Mbp and 1.84 Mb MSY,respectively.All the candidate Y-linked scaffolds in 3 selected species(red pandas,polar bears and ti­gers)were successfully verified using polymerase chain reaction.We re-annotated 8 carnivore MSYs including these 6 Y-linked scaffolds and domestic dog and cat MSY;a total of 11 orthologous genes conserved in at least 7 of the 8 carnivores were identified.These 11 Y-linked genes have significantly higher evolutionary rates com­pared with their X-linked counterparts,indicating less purifying selection for MSY genes.Taken together,our study shows that the approach of synteny search is a reliable and easily affordable strategy to identify Y-linked scaffolds from unordered carnivore genomes and provides a preliminary evolutionary study for carnivore MSY genes. 展开更多
关键词 carnivore species EVOLUTION male-specific region of Y chromosomes sex chromosome SYNTENY
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A joint call for actions to advance taxonomy in China 被引量:1
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作者 Chaodong Zhu Arong Luo +64 位作者 Ming Bai Michael COrr Zhonge Hou Siqin Ge Jun Chen yibo hu Xuming Zhou Gexia Qiao Hongzhi Kong Limin Lu Xiaohua Jin Lei Cai Xinli Wei Ruilin Zhao Wei Miao Qingfeng Wang Zhongli Sha Qiang Lin Meng Qu Jianping Jiang Jiatang Li Jing Che Xuelong Jiang Xiaoyong Chen Lianming Gao Zongxin Ren Chunlei Xiang Shixiao Luo Donghui Wu Dong Liu Yanqiong Peng Tao Su Chenyang Cai Tianqi Zhu Wanzhi Cai Xingyue Liu hu Li huaijun Xue Zhen Ye Xuexin Chen Pu Tang Shujun Wei Hong Pang Qiang Xie Feng Zhang Feng Zhang Xianjin Peng Aibing Zhang Taiping Gao Changfa Zhou Chen Shao Libin Ma Zhaoming Wei Yunxia Luan Ziwei Yin Wu Dai Cong Wei Xiaolei huang Jingxian Liu Xiangsheng Chen Tianci Yi Zhisheng Zhang Zhulidezi Aishan Qin Li Hongying hu 《Zoological Systematics》 CSCD 2022年第3期188-197,共10页
Taxonomy plays an important role in understanding the origin, evolution, and ecological functionality of biodiversity. There are large number of unknown species yet to be described by taxonomists, which together with ... Taxonomy plays an important role in understanding the origin, evolution, and ecological functionality of biodiversity. There are large number of unknown species yet to be described by taxonomists, which together with their ecosystem services cannot be effectively protected prior to description. Despite this, taxonomy has been increasingly underrated insufficient funds and permanent positions to retain young talents. Further, the impact factordriven evaluation systems in China exacerbate this downward trend, so alternative evaluation metrics are urgently necessary. When the current generation of outstanding taxonomists retires,there will be too few remaining taxonomists left to train the next generation. In light of these challenges, all co-authors worked together on this paper to analyze the current situation of taxonomy and put out a joint call for immediate actions to advance taxonomy in China. 展开更多
关键词 Endangered taxonomists morphology-based taxonomy integrative taxonomy capacity building SYSTEMATICS
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Digital Noah's Ark:last chance to save the endangered species 被引量:1
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作者 Fuwen Wei Guangping huang +4 位作者 Dengfeng Guan huizhong Fan Wenliang Zhou Depeng Wang yibo hu 《Science China(Life Sciences)》 SCIE CAS CSCD 2022年第11期2325-2327,共3页
Global biodiversity is undergoing dramatic loss,mostly due to anthropogenic actions and climate change.Around 2.3seed plants died out each year in the past 2.5 centuries(Humphreys et al.,2019).Current species extincti... Global biodiversity is undergoing dramatic loss,mostly due to anthropogenic actions and climate change.Around 2.3seed plants died out each year in the past 2.5 centuries(Humphreys et al.,2019).Current species extinction rates are about 1,000 times the likely background rate of extinction(Pimm et al.,2014). 展开更多
关键词 EXTINCTION LIKELY mostly
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