Pear genomes display significant genetic diversity and provide novel insights into the fruit quality traits differentiation

The pear(Pyrus spp.)is well known for diverse flavors,textures,and global horticultural importance.However,the genetic diversity responsible for its extensive phenotypic variations remains largely unexplored.Here,we de novo assembled and annotated the genomes of the maternal(PsbM)and paternal(PsbF)lines of the hybrid‘Yuluxiang'pear and constructed the pear pangenome of 1.15 Gb by combining these two genomes with five previously published pear genomes representing cultivated and wild germplasm.Using the constructed pangenome,we identified 21224 gene PAVs(Presence-absence variation)and 1158812 SNPs(Single Nucleotide Polymorphism)in the non-reference genome that were absent in the PsbM reference genome.Compared with SNP markers,PAV-based analysis provides additional insights into the pear population structure.In addition,some genes associated with pear fruit quality traits have differential occurrence frequencies and differential gene expression between Asian and European populations.Moreover,our analysis of the pear pangenome revealed a mutated SNP and an insertion in the promoter region of the gene PsbMGH3.1 potentially enhance sepal shedding in‘Xuehuali'which is vital for pear quality.PsbMGH3.1 may play a role in the IAA pathway,contributing to a distinct low-auxin phenotype observed in plants by heterologously overexpressing this gene.This research helps capture the genetic diversity of pear populations and provides genomic resources for accelerating breeding.

Spatial distribution patterns of Symplocos congeners in a subtropical evergreen broad-leaf forest of southern China

Studies on spatial distribution of congeneric species can supplement our understanding of species ecological processes. We analyzed population structure, spatial distribution, intra-and interspecific associations among six Symplocos tree species on a large(50 ha) plot in a subtropical, evergreen broad-leaf forest in southern China using spatial point pattern analysis methods. Our results suggested that the six Symplocos tree species were all clustered at small scales. The aggregation intensity of S. wikstroemiifolia with low abundance but relatively numerous large-diameter trees was much higher than that of the other five Symplocos species that occurred at high abundance but included few large-diameter trees. Spatial associations among the six congeners showed that 12 of 30 pairs were associated positively at small scales, and 13 of 30 pairs were unrelated. For species among different size classes, 79 of 120 pairs were not correlated, and 17 of 120 pairs were associated positively. These results showed insufficient evidence for interspecific competition and congeneric Symplocos species commonly coexist within subtropical plant communities. The spatial patterns of Symplocos species and their correlations changed with size(DBH) class and were simultaneously affected by spatial scales; the intensity of their aggregation and association decreased with increasing area of the sample plot.

Mixing planting proportions in a plantation affects functional traits and biomass allocation of Cunninghamia lanceolata and Phoebe bournei seedlings

Functional traits of trees are significantly associated with their adaptation strategies and productivity.However,the effects of species composition and mixing proportion on the functional traits of trees grown in mixed plantations have not been studied extensively.In this study,planting experiments(duration about seven months)were used to study variations in functional traits and biomass allocation of C unninghamia lanceolata(Lamb.)Hook and Phoebe bournei(Hemsley)Yang seedlings in five different mixes(0C:4P,1C:3P,1C:1P,3C:1P,and 4C:0P).Total leaf area per seedling increased in each species as its respective proportion in the mixture decreased.However,the specific leaf area decreased for P.bournei under low percent composition,and the specific leaf area for C.lanceolata differed only marginally among the plantings.The net photosynthetic rates of the two species were higher in the mixed plantings than in their corresponding monocultures,whereas the transpiration rate,stomatal conductance,and instantaneous water use efficiency were not different among the plantings.The average root length and root surface area of C.lanceolata and P.bournei were higher in the mixed plantings than in their monocultures.Specifically,root surface area of C.lanceolate and both root length and surface area of P.bournei increased significantly in the 1C:3P and 2C:2P mixed plantings.Leaf,stem,root,and total dry mass per seedling for C.lanceolata decreased with its increasing percent composition in the mixed plantings,while these variables varied less for P.bournei.The plasticity of biomass allocation was relatively low for both species.Total biomass per planting was higher in the mixed plantings than in the monocultures.Our study indicates that species composition and mixing proportion can considerably affect the functional traits of C.lanceolata and P.bournei.The increase in productivity in the mixed plantings may be partially attributed to low rates of competition between the two species,and future studies should examine the different interspecies relationships.The results of this study can be used to improve plantation productivity and ultimately increase the sustainability of tree products and help to better understand the adaptation strategies of plant coexistence.

Variations in seed size and seed mass related to tree growth over 5 years for 23 provenances of Quercus acutissima from across China

The origin of a seed strongly impacts its traits, and both origin and seed traits influence seed germination and seedling development. However, in many instances, this effect on the seedling does not persist into adulthood, and little is known about how seed traits and original environment affect seedling/tree growth over time. In this study, seed size, seed mass, seedling/tree growth and origins were collected and determined for 23 provenances of Quercus acutissima from across China. Origin variables correlated well with seed size and seed mass. In stepwise multiple regressions, a longitudinal aridity index explained 49.2-68.7% of the total variation in seed size and mass, while only seed width was correlated with seedling/tree height (H) and diameter at the ground (D) from seed traits and origins. The total variance in H and D explained by the models decreased over time, for example, the R 2 value of the models for H declined from 0.477 in the first year to 0.224 in the fourth year; no models was significant in the fifth year. These results indicate that seed size, regulated by the longitudinal aridity index strongly impacted seedling and tree growth, but the strength of the influence decreased over time, and disappeared after 4 years.