Application of near-infrared spectroscopy for fast germplasm analysis and classification in multi-environment using intact-seed peanut(Arachis hypogaea L.)

Peanut is a worldwide oilseed crop and the need to assess germplasm in a non-destructive manner is important for seed nutritional breeding.In this study,Near Infrared Spectroscopy(NIRS)was applied to rapidly assess germplasm variability from whole seed of 699 samples,field-collected and assembled in four genetic and environmentbased sets:one set of 300 varieties of a core-collection and three sets of 133 genotypes of an interspecific population,evaluated in three environments in a large spatial scale of two countries,Mbalmayo and Bafia in Cameroon and Nioro in Senegal,under rainfed conditions.NIR elemental spectra were gathered on six subsets of seeds of each sample,after three rotation scans,with a spectral resolution of 16 cm-1over the spectral range of867 nm to 2530 nm.Spectra were then processed by principal component analysis(PCA)coupled with Partial least squares-discriminant analysis(PLS-DA).As results,a huge variability was found between varieties and genotypes for all NIR wavelength within and between environments.The magnitude of genetic variation was particularly observed at 11 relevant wavelengths such as 1723 nm,usually related to oil content and fatty acid composition.PCA yielded the most chemical attributes in three significant PCs(i.e.,eigenvalues>10),which together captured 93%of the total variation,revealing genetic and environment structure of varieties and genotypes into four clusters,corresponding to the four samples sets.The pattern of genetic variability of the interspecific population covers,remarkably half of spectrum of the core-collection,turning out to be the largest.Interestingly,a PLS-DA model was developed and a strong accuracy of 99.6%was achieved for the four sets,aiming to classify each seed sample according to environment origin.The confusion matrix achieved for the two sets of Bafia and Nioro showed 100%of instances classified correctly with 100%at both sensitivity and specificity,confirming that their seed quality was different from each other and all other samples.Overall,NIRS chemometrics is useful to assess and distinguish seeds from different environments and highlights the value of the interspecific population and core-collection,as a source of nutritional diversity,to support the breeding efforts.

Selection criteria of MPOB-Angola germplasm collection for yield improvement of the oil palm

Oil palm germplasm collected from Angola,Africa in 1991 were subjected to genetic variability potential studies.The collection was planted in the form of open-pollinated families as trials at the Malaysian Palm Oil Board(MPOB)Kluang Research Station,Johor,Malaysia,in 1994.Dura palms from 52 families and tenera palms from 44 families of MPOB-Angola were evaluated for their bunch yield and bunch quality components.The objectives of this study were to determine the genetic variability among the families and performance of MPOB-Angola germplasm for yield improvement.The analysis of variance(ANOVA)revealed highly significant differences between the dura and tenera families for most of the traits,suggesting the presence of high genetic variability,which is essential for breeding programmes.Among the duras,family AGO 02.02 displayed the best yield performance,with a high fresh fruit bunch,oil yield and total economic product at 240.40,29.46 and 37.93 kg palm^(-1)year^(-1),respectively.As for the teneras,family AGO 03.04 recorded the highest FFB yield and oil yield at 249.25 and 45.22 kg palm^(-1)year^(-1),respectively.Besides that,several families with big fruit sizes or producing a mean fruit weight of 14-17 g were also identified.Both dura and tenera from AGO 01.01 recorded the highest oil to bunch(O/B)of 17.76%and 28.65%,respectively.These findings will facilitate the selection of palms from the MPOB-Angola germplasm for future breeding programmes.

Correction:Identification of SSR markers linked to the abscission of cotton boll traits and mining germplasm in Cotton

Correction:J Cotton Res 7,20(2024)https://doi.org/10.1186/s42397-024-00180-3 Following publication of the original article(Shui et al.2024),the author found 5 errors in the published article.1.One of the author’s name has been corrected from Gou Chunping to Guo Chunping.2.The reference(Zhao SQ.2016)in Table 2 has been updated to:Zhao SQ.Analysis on the major gene and multigene mixed inheritance and QTL mapping for early maturity traits in upland cotton.Chin Acad Agric Sci.2016.https://doi.org/10.3969/j.issn.201600501.(in Chinese with English abstract).3.In’Results’part,’Phenotype analysis of 238 cotton boll abscission among cotton accessions’paragraph,the phenotype analysis of AR1 ranging from 19.27%–63.79%,which was wrongly written as 19.27%-63.97%.4.The‘2018KRL’is modified to‘2018KEL’in Table 1.

Screening and identification of salt tolerance soybean varieties and germplasms

Soil salinization is a globally prevalent abiotic environmental stress.The imbalance of ions caused by high concentrations of sodium chloride results in a 40%reduction in soybean yield.Soybean,as an important crop for soil quality improvement,necessitates the identification of salt-tolerant varieties and germplasms to effectively utilize and enhance saline-alkali land.In this study,we assessed the salt tolerance of 435 soybean varieties and germplasms during the seedling stage.Among them,Qihuang34,You2104,Hongzhudou,Pamanheidou,and Osage exhibited grade 1 salt tolerance rates surpassing other tested materials.Furthermore,Hongzhudou and Qihuang34 demonstrated higher salt tolerance during germination and emergence stages based on their elevated rates of emergence,salt tolerance index,chlorophyll content,and shoot fresh weights.Overall findings provide valuable resources for molecular breeding efforts aimed at developing salt-tolerant soybean varieties suitable for cultivation in saline-alkali soils.

Extent and Structure of Phenotypic Variability in Solenostemon rotundifolius Germplasm from Ghana and Burkina Faso

Solenostemon rotundifolius is a species belonging to the Lamiaceae family. It is currently one of the minor plants of high socio-economic interest. One of the limitations to promoting this species in Burkina Faso is the lack of varieties that meet consumers’ demands. Implementing a breeding program is an important step toward achieving this goal. Such a program is based on the variability of agronomical traits of interest within evaluated germplasm. This study aimed to assess the level of two germplasms variability of S. rotundifolius from Ghana and Burkina Faso for traits related to vegetative development, cycle, and yield. Agromorphological characterization of 174 accessions, including 116 from Ghana and 58 from Burkina Faso was carried out in Randomised Complete Block Design with three replications. The characterization was made on the basis of fifteen (15) quantitative traits related to the canopy and leaf size, the cycle, and the yield. Analysis of variance revealed significant differences between accessions within each germplasm for all the evaluated traits. The analysis of the structuration of this agromorphological variability allowed organizing the accessions into different groups. These results could lead to the identification of accessions within each germplasm for breeding purposes or future research on genotype-environment interactions.

Study on Present Status of Plant Germplasm Resources Conservation and Countermeasures

Plant germplasm resources is the material foundation and key point for agricultural production, crop breeding and bioengineering. China is one of the centers for the origin of the cultivated plants worldwide, as well as one of the countries with most abundant plant resources and the highest biodiversity. Strengthening research in the conservation and utilization of plant germplasm resources is of significant value and importance. In this study, the present status of conservation, utilization, and existing problems of plant germplasm resources in China and around the world were reviewed; further, through analyzing measures taken by global countries for plant germplasm resources protection, countermeasures for plant germplasm resources conservation in China were also presented from three aspects, namely, collection and conservation, information network construction and national legislation and policies.

Collection and Preservation of Cashew Germplasms Resources Research Progress in China

The cashew tree is a typical tropical nut tree species in China, and the collection, identification and innovated utilization of excellent cashew germplasm resources are of great significance to increase the income of farmers and agricultural benefits in the tropical area of China. This study summarized the major advances on cashew germplasm resources in China, analyzed the major research progress and existing problems from the aspects of the collection and evaluation, resistances, genetic diversity of cashew germplasm resources, and put forward the work ideas to analyze the construction of core germplasm bank and the genetic stability of the major biological characteristics of cashew germplasm resources, which were of important significance for the improvement of the cultivar classification and resource evaluation system of cashew germplasm resources in China.

AFLP Fingerprinting Analysis of Elite Hevea brasiliensis Germplasm

There are more than 6 000 clones of Hema brasiliensis Mull. Ary germplasm in the germplasm garden of Chinese National Key Biotechnology Laboratory for Tropical Crops and some of them are elite germplasm demonstrated by production and previous studies. AFLP (amplified fragment length polymorphism) fingerprinting analysis was performed on 25 clones (15 of Wickham clones and 10 of Amazon wild clones which possess phenotypes with high-yielding,/Iow-yielding, cold-tolerance/cold-sensitivity, oidium-resistance/oidium-sensitivity, tapping panel dryness (TPD) /healthy) respectively through a 377 DNA sequencer (P. E. Corp.) and PAGE electrophoresis results were analyzed by using GeneScan(TM) and Genotype(TM) Analysis software (P. E. Corp. The fragment profiles of different clones were obtained. Five hundred and eighteen fragments were generated by two primer combinations screened from 64 primer combinations and 511 fragments appeared to be polymorphic (98.6%). Genetic distance ranged from 0.25 to 0.81 between clones and ranged from 0.07 to 0.17 within RRIM600 clone. A specific 320 bp fragment of the oidium-resistant clones was found through genotype analysis. These results showed that AFLP fingerprints were highly reproducible and powerful and can be widely used in germplasm identification and genetic diversity analysis of Hema brasiliensis. In addition, based on the AFLP data, cluster analysis was performed. Cluster results showed that all the clones studied were almost clustered into a group one by one.

Documentation Concordance,Sharing and Utilization of Tea Germplasm Resources in Yunnan

In this paper,the research achievements and progress of Yunnan tea germplasm resource in past sixty years are systematically reviewed from the following aspects：exploration,collecting,conservation,protection,identification,evaluation and shared utilization.Simultaneously,the current problems and the suggestions about subsequent development of tea germplasm resources in Yunnan were discussed,including superior and rare germplasm collection,tea genetic diversity research,biotechnology utilization in tea germplasm innovation,super gene exploration and function,the construction of utilization platform,biological base of species and population conservation.

Variation and Probability Grading of Fruit Firmness in Peach Germplasm Resource

Objective The aim was to provide basis for further studies on fruit firmness in peach fruits and the standardization and standardization of peach germplasm resource. [ Method] The analysis of fruit firmness of peach germplasm resource was based on the improved firmness measurement, and the probability grading of characteristics was carried out on peach fruit firmness. [Result] The coefficient of variation of peach fruit firmness with skin was less than that of fruit firmness without skin; the fruit firmness with skin and fruit firmness without skin were both fitted the normal distribution; the probability grading of characteristics were divided into five series based on four points of （X-1. 281 8s）, （X-0. 524 6s）, （X＋0. 524 6s） and （X＋1.281 8s）, so that the probability of 1 -5 were 10%, 20%, 40%, 20% and 10%. [Conclusion] There was more abundant genetic basis in fruit firmness, which held a potential for greater choice.

Research on Background and Utilization of Germplasm Resources in Maize

[Objective] The research aimed at introducing the background and utilization of germplasm resources in maize.[Method] The research progress on genetic background and utilization of maize germplasm resources was comprehensively reviewed in this paper,including maize heterotic groups and heterotic patterns,their flexible application in breeding and the utilization of various types of original materials.[Result] The results show that germplasm resource is the premise and basis for maize breeding.In-depth understanding and a reasonable selection of germplasm resources can significantly improve the breeding efficiency and speed up the breeding process.At the same time,it is considered that the selection and construction of original materials in maize breeding can not be limited to the heterotic groups and heterotic patterns,but has to be used reasonablely according to different types of germplasm resources and individual breeding objective and idea as well.[Conclusion] This study had broadened the idea and provided inspiration for the maize breeding practice in China.

SSR-based Analysis on the Genetic Relationship of 21 Maize Germplasms in Guizhou Province

To reveal the genetic diversity of maize germplasm resources in Guizhou Province, we screened 20 pairs of SSR primers out of 100 pairs tested for amplify-ing the al eles in 21 shares of maize germplasm col ected there. Total y 85 al eles were identified from the experimental materials, and each primer pair amplified 2-9 al eles, with an average of 4.25. The polymorphism information content （PIC） values varied from 0.19 to 0.74, with an average of 0.50. The clustering analysis by UPG-MA indicated that the genetic distance among the tested lines was 0.22-0.63, with an average of 0.43. This provided the theoretical foundations for establishing the finger print chromatogram of maize, further for exploring and utilizing maize germplasms Guizhou Province.

ISSR Analysis of Genetic Relationship of Germplasm Resource in Prunus mume Sibe. et Zucc

Using ISSR technique to analyze the diversity and genetic relationship of germplasm resources in 39 Prunus mume Sibe. et Zucc., the result showed that 10 primers were screened with high resolution from 51 primers, 120 fragments were amplified, of which 98 were polymorphic loci, accounting for 81.67% of total. Tested materials were divided into 3 classes, as was fundamentally accorded with the traditional classification base on horticulture. There was no obvious difference in geographic relationship among the clustering results.

Evaluation of Rice Germplasm from Southeast Asia

Totaling 662 rice germplasms were collected from Southeast Asia,including 120 wild species and 542 cultivated rice plants.An information database of the collections was constructed after phenotype identification.Based on evaluation of cultivated rice,some germplasm resources were found to have good characteristics,including 58 accessions resistant to brown planthopper,nine accessions resistant to rice blast,eleven accessions resistant to bacterial blight,and twelve accessions with salt-tolerance.The introduced rice resources broaden genetic basis of rice and enrich rice genbank in China,which would play an active role in rice genetic research and rice breeding.

EST-SSR Marker-based Genetic Diversity Analysis of Rhododendron simsii Germplasm in Guifeng Mountain

Rhododendron simsii（Ericaeae：Rhododendron） has high ornamental value and ecological value.In this study,7 pairs of novel EST-SSR markers were developed from the genomic sequence of R.simsii,and they were used to investigate the genetic diversity of 32 natural R.simsii samples from Guifeng Mountain,Hubei Province.Results showed that a total of 31 polymorphic bands were amplified with allele number per locus of 4.43.Mean values of heterozygosity（Ho） and expected heterozygosity（He） were 0.679 58 and 0.723 14,respectively.This research will not only enrich the existing SSR database,but also lay a foundation for subsequent studies about molecular marker-assisted breeding,genetic diversity analysis,genetic structure analysis and phylogenetic analysis.

Screening of Drought Stress Indicators and Analysis of Drought Resistance in Cultivated Rice Germplasm Resources in Guangxi

This study aimed to screen drought stress indicators and analyze the drought resistance in 105 cultivated rice germplasm resources in Guangxi Zhuang Autonomous Region under drought stress in the whole growth period based on D value of seven morphological traits including panicle neck thickness,effective panicle number per plant,1 000-grain weight,filled grain number per panicle,total grain number,seed setting rate and yield per plant.According to the results,under drought stress,yield per plant exhibited significant positive correlation with panicle neck thickness and exhibited extremely significant positive correlation with other five morphological traits.Based on the identification and evaluation of comprehensive drought-resistance index D value,seven highly drought-resistant cultivated rice varieties were screened,accounting for 6.67％.Upland rice germplasm resources in Guangxi Zhuang Autonomous Region possess strong drought-resistance capacity,which could be used to screen highly drought-resistant rice germplasm materials.This study provided material basis and theoretical reference for breeding drought resistant rice cultivars in Guangxi Zhuang Autonomous Region.

Cytological and Molecular Identification of Alien Chromatin in Giant Spike Wheat Germplasm

Alien chromosomes of twelve giant spike wheat germplasm lines were identified by C-banding, genomic in situ hybridization (GISH), sequence characterized amplified region (SCAR), and random amplified polymorphic DNA (RAPD). All lines showed a chromosome number of 2n = 42, five of them carried both a pair of wheat-rye (Triticum aestivum-Secale cereal) 1BL/1RS translocation chromosomes and a pair of Agropyron intermedium (Ai) chromosomes, three carried a pair of Ai chromosomes only, three others carried a pair of 1BL/1RS chromosomes only, and one carried neither 1BL/1BS nor Ai chromosome. Further identification revealed that the identical Ai chromosome in these germplasm lines substituted the chromosome 2D of common wheat (T aestivum L.), designated as 2Ai. The genetic implication and further utilization of 2Ai in wheat improvement were also discussed.

Research Progress on Germplasm Resources of Common Bean

The origin, classification, utilization and evaluation of germplasm resources, and breeding methods were introduced. The researches of biotic or/and abiotic stress, exploration of genomics and proteomics in common bean in recent years were reviewed in this paper, in order to provide theoretical reference for utilization and innovation of germplasm resources in common bean.

ISSR Analysis on Genetic Diversity of New Oil Palm Germplasm

[Objective]The aim of this study was to analyze the genetic diversity of new oil palm germplasm from DNA molecular level and provides a theoretical basis for the development and utilization of new oil palm germplasm. [Method]The genetic diversity of 22 new oil palm germplasm from Hainan and Yunnan were analyzed by ISSR technique. [Result]A total number of 201 bands were amplified with 23 ISSR primers,and polymorphic bands accounted for 41.8%. 22 oil palm varieties were divided into two groups by cluster analysis：Group I included new varieties of R1-R12 from Hainan and V20 from Yunnan,while group II included new varieties of V13-V22 from Yunnan,except V20. [Conclusion]New breeding oil palm germplasm from Hainan and Yunnan may come from different countries or regions.

Establishment and Share of Tea Germplasm Database of Yunnan Province

[Objective] The paper was to establish tea germplasm database of Yunnan Province,and promote sharing of the tea germplasm resources.[Method] Eight hundred and thirty copies of tea germplasm resources of Yunnan Province were first systematically documented by using Access database software,the generic description of 631 tea resources and characteristic description of 300 tea resources were submitted for e-platform,then linked with the national e-platform for natural scientific and technological resources,and the tea germplasm database of Yunnan Province was established.[Result] Based on the conservation and utilization status of tea germplam resources,the sharing and utilization framework of tea germplam resources was presented.Many problems and suggestion about tea germplasm resources in the process of conservation,documentation concordance and sharing were pointed out.For example,conservation areas were separated and system was not completed;the main traits assessment and identification researching work had not completely accomplished and sharing was inefficient.[Conclusion] The paper laid foundation for standardized,digitized and information-based management of tea germplasm resources.