A Structure Similarity Analysis of Secreted Proteins in Magnaporthe oryzae and Its Host Oryza sativa

The structure similarity of secreted proteins in rice blast fungus Magnaporthe oryzae and its host Oryza sativa was analyzed. One thousand two hundred and forty one proteins were predicted as secreted proteins using four algorithms based on 11 074 proteins in genome of M. oryzae. One hundred and forty six secreted proteins（ 11. 8% of M. oryzae secretome） were aligned with 116 rice proteins（ 0. 21% of 56 278 rice proteins） using BLAST search on rice genome. One hundred sixteen rice similar proteins participated in rice cell wall modification（ cell wall associated enzymes） and signal transduction（ proteases）. These results imply that both cell wall involved proteins and signal transduction are probably hijacks pathway between host pants and pathogenic fungi. Because these proteins are highly conserved among fungi and plants,the express patterns of these protein coding genes during the interaction process are valuable to study in detail.

Structural similarity of lithospheric velocity models of Chinese mainland

Existing lithospheric velocity models exhibit similar structures typically associated with the first-order tectonic features,with dissimilarities due to different data and methods used in model generation.The quantification of model structural similarity can help in interpreting the geophysical properties of Earth's interior and establishing unified models crucial in natural hazard assessment and resource exploration.Here we employ the complex wavelet structural similarity index measure(CW-SSIM)active in computer image processing to analyze the structural similarity of four lithospheric velocity models of Chinese mainland published in the past decade.We take advantage of this method in its multiscale definition and insensitivity to slight geometrical distortion like translation and scaling,which is particularly crucial in the structural similarity analysis of velocity models accounting for uncertainty and resolution.Our results show that the CW-SSIM values vary in different model pairs,horizontal locations,and depths.While variations in the inter-model CW-SSIM are partly owing to different databases in the model generation,the difference of tomography methods may significantly impact the similar structural features of models,such as the low similarities between the full-wave based FWEA18 and other three models in northeastern China.We finally suggest potential solutions for the next generation of tomographic modeling in different areas according to corresponding structural similarities of existing models.

QAUST:Protein Function Prediction Using Structure Similarity,Protein Interaction,and Functional Motifs

The number of available protein sequences in public databases is increasing exponentially.However,a sig-nificant percentage of these sequences lack functional annotation,which is essential for the understanding of how bio-logical systems operate.Here,we propose a novel method,Quantitative Annotation of Unknown STructure(QAUST),to infer protein functions,specifically Gene Ontology(GO)terms and Enzyme Commission(EC)numbers.QAUST uses three sources of information:structure information encoded by global and local structure similarity search,biological network information inferred by protein–protein interaction data,and sequence information extracted from functionally discriminative sequence motifs.These three pieces of information are combined by consensus averaging to make the final prediction.Our approach has been tested on 500 protein targets from the Critical Assessment of Functional Annotation(CAFA)benchmark set.The results show that our method provides accurate functional annotation and outperforms other prediction methods based on sequence similarity search or threading.We further demonstrate that a previously unknown function of human tripartite motif-containing 22(TRIM22)protein predicted by QAUST can be experimentally validated.

Joint inversion of gravity and vertical gradient data based on modified structural similarity index for the structural and petrophysical consistency constraint

Joint inversion is one of the most effective methods for reducing non-uniqueness for geophysical inversion.The current joint inversion methods can be divided into the structural consistency constraint and petrophysical consistency constraint methods,which are mutually independent.Currently,there is a need for joint inversion methods that can comprehensively consider the structural consistency constraints and petrophysical consistency constraints.This paper develops the structural similarity index(SSIM)as a new structural and petrophysical consistency constraint for the joint inversion of gravity and vertical gradient data.The SSIM constraint is in the form of a fraction,which may have analytical singularities.Therefore,converting the fractional form to the subtractive form can solve the problem of analytic singularity and finally form a modified structural consistency index of the joint inversion,which enhances the stability of the SSIM constraint applied to the joint inversion.Compared to the reconstructed results from the cross-gradient inversion,the proposed method presents good performance and stability.The SSIM algorithm is a new joint inversion method for petrophysical and structural constraints.It can promote the consistency of the recovered models from the distribution and the structure of the physical property values.Then,applications to synthetic data illustrate that the algorithm proposed in this paper can well process the synthetic data and acquire good reconstructed results.

Color Image Quality Assessment Based on Structural Similarity

It is well-known that classical quality measures,such as Mean Squared Error(MSE),Weighted Mean Squared Error(WMSE)or Peak Signal-to-Noise Ratio(PSNR),are not always corresponding with visual observations.Structural similarity based image quality assessment was proposed under the assumption that the Human Visual System(HVS)is highly adapted for extracting structural information from an image.While the demand on high color quality increases in the media industry,color loss will make the visual quality different.In this paper,we proposed an improved quality assessment(QA)method by adding color comparison into the structural similarity(SSIM)measurement system for evaluating color image quality.Then we divided the task of similarity measurement into four comparisons:luminance,contrast,structure,and color.Experimental results show that the predicted quality scores of the proposed method are more effective and consistent with visual quality than the classical methods using five different distortion types of color image sets.

Paired regions for shadow removal approach based on multi-features

The existence of shadow leads to the degradation of the image qualities and the defect of ground object information.Shadow removal is therefore an essential research topic in image processing filed.The biggest challenge of shadow removal is how to restore the content of shadow areas correctly while removing the shadow in the image.Paired regions for shadow removal approach based on multi-features is proposed, in which shadow removal is only performed on related sunlit areas.Feature distance between regions is calculated to find the optimal paired regions with considering of multi-features(texture, gradient feature, etc.) comprehensively.Images in different scenes with peak signal-to-noise ratio(PSNR) and structural similarity(SSIM) evaluation indexes are chosen for experiments.The results are shown with six existing comparison methods by visual and quantitative assessments, which verified that the proposed method shows excellent shadow removal effect, the brightness, color of the removed shadow area, and the surrounding non-shadow area can be naturally fused.

Underwater Image Enhancement Using MIRNet

In recent years,enhancement of underwater images is a challenging task,which is gaining priority since the human eye cannot perceive images under water.The significant details underwater are not clearly captured using the conventional image acquisition techniques,and also they are expensive.Hence,the quality of the image processing algorithms can be enhanced in the absence of costly and reliable acquisition techniques.Traditional algorithms have certain limitations in the case of these images with varying degrees of fuzziness and color deviation.In the proposed model,the authors used a deep learning model for underwater image enhancement.First,the original image is pre-processed by the white balance algorithm for colour correction and the contrast of the image is improved using the contrast enhancement technique.Next,the pre-processed image is given to the MIRNet for enhancement.MIRNet is a deep learning framework that can be used to enhance the low-light level images.The enhanced image quality is measured using peak signal-to-noise ratio(PSNR),root mean square error(RMSE),and structural similarity index(SSIM)parameters.

A novel image segmentation approach for wood plate surface defect classification through convex optimization

Detection of wood plate surface defects using image processing is a complicated problem in the forest industry as the image of the wood surface contains different kinds of defects. In order to obtain complete defect images, we used convex optimization(CO) with different weights as a pretreatment method for smoothing and the Otsu segmentation method to obtain the target defect area images. Structural similarity(SSIM) results between original image and defect image were calculated to evaluate the performance of segmentation with different convex optimization weights. The geometric and intensity features of defects were extracted before constructing a classification and regression tree(CART) classifier. The average accuracy of the classifier is 94.1% with four types of defects on Xylosma congestum wood plate surface: pinhole, crack,live knot and dead knot. Experimental results showed that CO can save the edge of target defects maximally, SSIM can select the appropriate weight for CO, and the CART classifier appears to have the advantages of good adaptability and high classification accuracy.

Super-Resolution Image Reconstruction Based on an Improved Maximum a Posteriori Algorithm

A maximum a posteriori（ MAP） algorithm is proposed to improve the accuracy of super resolution（ SR） reconstruction in traditional methods. The algorithm applies both joints image registration and SR reconstruction in the framework,but separates them in the process of iteratiion. Firstly,we estimate the shifting parameters through two lowresolution（ LR） images and use the parameters to reconstruct initial HR images. Then,we update the shifting parameters using HR images. The aforementioned steps are repeated until the ideal HR images are obtained. The metrics such as PSNR and SSIM are used to fully evaluate the quality of the reconstructed image. Experimental results indicate that the proposed method can enhance image resolution efficiently.

Denoising Letter Images from Scanned Invoices Using Stacked Autoencoders

Invoice document digitization is crucial for efficient management in industries.The scanned invoice image is often noisy due to various reasons.This affects the OCR(optical character recognition)detection accuracy.In this paper,letter data obtained from images of invoices are denoised using a modified autoencoder based deep learning method.A stacked denoising autoencoder(SDAE)is implemented with two hidden layers each in encoder network and decoder network.In order to capture the most salient features of training samples,a undercomplete autoencoder is designed with non-linear encoder and decoder function.This autoencoder is regularized for denoising application using a combined loss function which considers both mean square error and binary cross entropy.A dataset consisting of 59,119 letter images,which contains both English alphabets(upper and lower case)and numbers(0 to 9)is prepared from many scanned invoices images and windows true type(.ttf)files,are used for training the neural network.Performance is analyzed in terms of Signal to Noise Ratio(SNR),Peak Signal to Noise Ratio(PSNR),Structural Similarity Index(SSIM)and Universal Image Quality Index(UQI)and compared with other filtering techniques like Nonlocal Means filter,Anisotropic diffusion filter,Gaussian filters and Mean filters.Denoising performance of proposed SDAE is compared with existing SDAE with single loss function in terms of SNR and PSNR values.Results show the superior performance of proposed SDAE method.

Fully automatic identification and discrimination of sperm’s parts in microscopic images of stained human semen smear

In the last years, digital image processing and analysis are used for computer assisted evaluation of semen quality with therapeutic goals or to estimate its fertility by means of spermatozoid motility and morphology. Sperm morphology is assessed routinely as part of standard laboratory analysis in the diagnosis of human male infertility. Nowadays assessments of sperm morphology are mostly done based on subjective criteria. In order to avoid subjectivity, numerous studies that incorporate image analysis techniques in the assessment of sperm morphology have been proposed. The primary step of all these methods is segmentation of sperm’s parts. In this paper, we have proposed a new method for segmentation of sperm’s Acrosome, Nucleus, Mid-piece and identification of sperm’s tail through some points which are placed on the sperm’s tail, accurately. These estimated points could be used to verify the morphological characteristics of sperm’s tail such as length, shape and etc. At first, sperm’s Acrosome, Nucleus and Mid-piece are segmented through a method based on a Bayesian classifier which utilizes the entropy based expectation–maximization (EM) algorithm and Markov random field (MRF) model to obtain and upgrade the class conditional probability density function (CCPDF) and the apriori probability of each class. Then, a pixel at the end of sperm’s Mid-piece, is selected as an initial point. To find other pixels which are placed on the sperm’s tail, structural similarity index (SSIM) is used in an iterative scheme. In order to stop the algorithm automatically at the end of sperm’s tail, local entropy is estimated and used as a feature to determine if a point is located on the sperm’s tail or not. To compare the performance of the proposed approach with those of previous approaches including manual segmentation, the Accuracy, Sensitivity and Specificity were calculated.

A new image watermarking framework based on levels-directions decomposition in contourlet representation

With the development of digital information technologies,robust watermarking framework is taken into real consideration as a challenging issue in the area of image processing,due to the large applicabilities and its utilities in a number of academic and real environments.There are a wide range of solutions to provide image watermarking frameworks,while each one of them is attempted to address an efficient and applicable idea.In reality,the traditional techniques do not have sufficient merit to realize an accurate application.Due to the fact that the main idea behind the approach is organized based on contourlet representation,the only state-of-the-art materials that are investigated along with an integration of the aforementioned contourlet representation in line with watermarking framework are concentrated to be able to propose the novel and skilled technique.In a word,the main process of the proposed robust watermarking framework is organized to deal with both new embedding and de-embedding processes in the area of contourlet transform to generate watermarked image and the corresponding extracted logo image with high accuracy.In fact,the motivation of the approach is that the suggested complexity can be of novelty,which consists of the contourlet representation,the embedding and the corresponding de-embedding modules and the performance monitoring including an analysis of the watermarked image as well as the extracted logo image.There is also a scrambling module that is working in association with levels-directions decomposition in contourlet embedding mechanism,while a decision maker system is designed to deal with the appropriate number of sub-bands to be embedded in the presence of a series of simulated attacks.The required performance is tangibly considered through an integration of the peak signal-to-noise ratio and the structural similarity indices that are related to watermarked image.And the bit error rate and the normal correlation are considered that are related to the extracted logo analysis,as well.Subsequently,the outcomes are fully analyzed to be competitive with respect to the potential techniques in the image colour models including hue or tint in terms of their shade,saturation or amount of gray and their brightness via value or luminance and also hue,saturation and intensity representations,as long as the performance of the whole of channels are concentrated to be presented.The performance monitoring outcomes indicate that the proposed framework is of significance to be verified.

A Hybrid Security Framework for Medical Image Communication

Authentication of the digital image has much attention for the digital revolution.Digital image authentication can be verified with image watermarking and image encryption schemes.These schemes are widely used to protect images against forgery attacks,and they are useful for protecting copyright and rightful ownership.Depending on the desirable applications,several image encryption and watermarking schemes have been proposed to moderate this attention.This framework presents a new scheme that combines a Walsh Hadamard Transform(WHT)-based image watermarking scheme with an image encryption scheme based on Double Random Phase Encoding(DRPE).First,on the sender side,the secret medical image is encrypted using DRPE.Then the encrypted image is watermarking based on WHT.The combination between watermarking and encryption increases the security and robustness of transmitting an image.The performance evaluation of the proposed scheme is obtained by testing Structural Similarity Index(SSIM),Peak Signal-to-Noise Ratio(PSNR),Normalized cross-correlation(NC),and Feature Similarity Index(FSIM).

Truncation and Rounding-Based Scalable Approximate Multiplier Design for Computer Imaging Applications

Advanced technology used for arithmetic computing application,comprises greater number of approximatemultipliers and approximate adders.Truncation and Rounding-based Scalable ApproximateMultiplier(TRSAM)distinguish a variety of modes based on height(h)and truncation(t)as TRSAM(h,t)in the architecture.This TRSAM operation produces higher absolute error in Least Significant Bit(LSB)data shift unit.A new scalable approximate multiplier approach that uses truncation and rounding TRSAM(3,7)is proposed to increase themultiplier accuracy.With the help of foremost one bit architecture,the proposed scalable approximate multiplier approach reduces the partial products.The proposed approximate TRSAM multiplier architecture gives better results in terms of area,delay,and power.The accuracy of 95.2%and the energy utilization of 24.6 nJ is observed in the proposed multiplier design.The proposed approach shows 0.11%,0.23%,and 0.24%less Mean Absolute Relative Error(MARE)when compared with the existing approach for the input of 8-bit,16-bit,and 32-bit respectively.It also shows 0.13%,0.19%,and 0.2%less Variance of Absolute Relative Error(VARE)when compared with the existing approach for the input of 8-bit,16-bit,and 32-bit respectively.The proposed approach is implemented with Field-Programmable Gate Array(FPGA)and shows the delay of 3.640,6.481,12.505,22.572,and 36.893 ns for the input of 8-bit,16-bit,32-bit,64-bit,and 128-bit respectively.The proposed approach is applied in digital filters designwhich shows the Peak-Signal-to-NoiseRatio(PSNR)of 25.05 dB and Structural Similarity Index Measure(SSIM)of 0.98 with 393 pJ energy consumptions when used in image application.The proposed approach is simulated with Xilinx and MATLAB and implemented with FPGA.

USSL Net:Focusing on Structural Similarity with Light U-Structure for Stroke Lesion Segmentation

Automatic segmentation of ischemic stroke lesions from computed tomography(CT)images is of great significance for identifying and curing this life-threatening condition.However,in addition to the problem of low image contrast,it is also challenged by the complex changes in the appearance of the stroke area and the difficulty in obtaining image data.Considering that it is difficult to obtain stroke data and labels,a data enhancement algorithm for one-shot medical image segmentation based on data augmentation using learned transformation was proposed to increase the number of data sets for more accurate segmentation.A deep convolutional neural network based algorithm for stroke lesion segmentation,called structural similarity with light U-structure(USSL)Net,was proposed.We embedded a convolution module that combines switchable normalization,multi-scale convolution and dilated convolution in the network for better segmentation performance.Besides,considering the strong structural similarity between multi-modal stroke CT images,the USSL Net uses the correlation maximized structural similarity loss(SSL)function as the loss function to learn the varying shapes of the lesions.The experimental results show that our framework has achieved results in the following aspects.First,the data obtained by adding our data enhancement algorithm is better than the data directly segmented from the multi-modal image.Second,the performance of our network model is better than that of other models for stroke segmentation tasks.Third,the way SSL functioned as a loss function is more helpful to the improvement of segmentation accuracy than the cross-entropy loss function.

Research Modification of Liquid Hydrocarbons Irradiated by a Nanosecond e-Beam

Air or inert atmosphere irradiation of liquid normal alkanes C5-C8 and benzene by electron beam was carried out. Oxidation （in the air） or isomerization （in the inert gases） of liquid normal alkanes under electron beam was shown. Action of electron beam on benzene molecules in the air or in the inert atmosphere leads to biphenyl, terphenyl and polymers. Irradiation by the bunch of electrons of mixture hexane with 10% benzene reduced to firm fractions （fullerene＇s similar structures） in a deposit.

PRIMARY RESEARCH ON FRACTAL GEOMETRY OF MERIDIAN THEORY

In meridian theory of traditional Chinese medicine (TCM), the geometrical descriptions can be traced back to the remote ancient times in China, mainly in The Yellow Emperor’s Internal Classic (The Internal Classic in short). Euclid’s geometry, topology and other classic mathematics are all at their wit’s end to explain the high complexity and non clinear phenomenon of the meridian. In recent over 2000 years, the meridian phenomenon has been being the challenge to fundamental mathematics. Fractral geometry, founded by Mandelbrot (1975), is a branch of learning for investigating irregular geometrical curves. It has successfully solved some qualitative and quantitative problems about the topographical structure of molecular Brown’s movement curve and other irregular complicated curves and geometrical characters. The characteristics of geometrical topographical structure of meridian and its phenomenon belong to the research category of Fractal Geometry. The author of this paper believes that Fractal Geometry may provide a useful mathematical tool and a possible way for revealing the enigma of acup moxibustion meridian theory. The human body is of basic characters of Fractal Geometry in structure, while meridian is the expression form of Fractal structure of the human body. The basic Fractal geometrical characters of meridian are: self similarity, self affinity, symmetry, minute structure and self avoidance, which has been applied for thousands of years in clinic, such as “taking the acupoints on the right side of the body in cases of disorders appearing on the left side and vice versa". The basic characters of meridians are 1) symmetry of the 12 regular meridians on the bilateral sides of the body (symmetry); 2) similarity in characters and actions of acupoints of the same one meridian (self similarity); 3) taking acupoints on the lower part of the body when disorders occurring on the upper part of the body; and taking acupoints on the upper part of the body if disorders appearing on the lower part (self affinity); 4) micro acupuncture system including hand acupuncture, foot acupuncture, scalp acupuncture, auricular acupuncture and eye acupuncture (minute structure); and 5) systematical running of needling sensation (self avoidance).

Performance Analysis of Image Smoothing Techniques on a New Fractional Convolution Mask for Image Edge Detection

We present the analysis of three independent and most widely used image smoothing techniques on a new fractional based convolution edge detector originally constructed by same authors for image edge analysis. The implementation was done using only Gaussian function as its smoothing function based on predefined assumptions and therefore did not scale well for some types of edges and noise. The experiments conducted on this mask using known images with realistic geometry suggested the need for image smoothing adaptation to obtain a more optimal performance. In this paper, we use the structural similarity index measure and show that the adaptation technique for choosing smoothing function has significant advantages over a single function implementation. The new adaptive fractional based convolution mask can smoothly find edges of various types in detail quite significantly. The method can now trap both local discontinuities in intensity and its derivatives as well as locating Dirac edges.

RF MEMS Based Reconfigurable Rectangular Slotted Self Similar Antenna

Wireless communication systems which require flexibility and reconfigurability in antenna systems faces main problems like antenna performance, size, weight and cost. A wide band Frequency Reconfigurable Rectangular Slotted Self Similar Antenna has been proposed in this paper. The rectangular slotted patch is repeated for two iterations at different scales and is separated by means of Radio Frequency Micro Electro Mechanical Systems (RF MEMS) switches in order to provide reconfigurability. The antenna can operate in three frequency bandsi.e. K-band, Ku-band and Ka-band by altering the states of RF MEMS switches. To avoid fringing effects and to improve antenna performance, quarter wavelength (λ/4) spacing is required between the antenna and the ground plane. However, a Reconfigurable Antenna requires different λ/4 spacing which is difficult to achieve using a common ground plane. So the Frequency Reconfigurable antenna is integrated with high impedance surface (HIS) like Electronic Band Gap (EBG) structures to suppress standing waves and surface waves with a unified profile thickness of 1.75 mm. The overall dimension of the proposed antenna along with RF MEMS Switch, feed element and HIS is about 8 mm × 8 mm × 1.75 mm. The simulated results of the proposed antenna reveal enhancement in antennas performance like Voltage Standing Wave Ratio (VSWR), Front to Back Ratio (FBR) and bandwidth when it is placed over HIS EBG. Also the radiation patterns of the proposed antenna when placed over EBG shows the suppression of side lobe and backward radiation.

Adaptive Spacecraft Attitude Tracking Controller Design Based on Similar Skew-symmetric Structure

This article presents an adaptive attitude tracking controller with external disturbances and unknown inertia parameters. The similar skew-symmetric structure is extended from the autonomous case to the non-autonomous case. The non-autonomous similar skew-symmetric is chosen as the desired structure of the closed loop system for attitude controller design. Based on this structure, a novel adaptive backstepping scheme is proposed to design the attitude controller by taking full advantage of the symmetry and the positive definiteness of the inertia matrix. The attitude tracking precision is enhanced by employing the linear parameterized form of the external disturbance torques. Simulation results demonstrate the effectiveness of the proposed attitude controller.