Based on typo-morphological studies,this paper proposes the concept of “space gene” from the perspective of urban spatial development theory.Specifically,space gene refers to a unique and relatively stable pattern o...Based on typo-morphological studies,this paper proposes the concept of “space gene” from the perspective of urban spatial development theory.Specifically,space gene refers to a unique and relatively stable pattern of spatial organization formed as a result of long-term interaction among the three dimensions:urban space,natural environment,and socio-culture.It conveys distinctive characteristics of different regions and contributes to a unique city identity and a harmonious relationship among the three dimensions.This paper points out that urban planning and design can be localized through the identification-analysis-guidance process of space genes,avoiding both the design scheme that does not respect culture and nature and the practice that a unified model is adopted to create same images in different cities,as well as prompting the directional turn of urban planning and design approaches from space form creation to space gene analysis.It provides an effective design path for a win-win result among urban development,natural protection,and cultural inheritance.Furthermore,the paper discusses the prospect of the Space GenBank Project.展开更多
The use of hair roots as experimental samples has been a research focus for understanding the effects of spaceflight on astronauts, because it has many advantages, one of which is the fact that hair matrix cells activ...The use of hair roots as experimental samples has been a research focus for understanding the effects of spaceflight on astronauts, because it has many advantages, one of which is the fact that hair matrix cells actively divide in a hair follicle and sensitively reflect the physical conditions of the human body. In 2009, a research program focusing on the analysis of astronauts’ hairs was initiated to examine the effects of long-term spaceflight on the gene expression and mineral metabolism in the human body. Since the number of samples per astronaut is limited to 5 strands of hairs at each sampling point, due to the ethical viewpoint of astronauts or limited resources in space, it is important to develop an effective method for the molecular analysis of small amounts of hair roots. In this study, mRNA successfully extracted from 1, 5, and 10 hair follicles was amplified and subjected to the DNA microarray analysis to compare the gene expression within subjects. The results indicated that (1) it was possible to perform the genetic analysis on hair samples stored at -80℃, even without a fixation buffer and (2) the newly modified method of mRNA extraction and analysis was effective in detecting differential gene expression in samples containing only 5 hairs. In conclusion, RNA was efficiently extracted from 5 hair roots, which is the same number of hair roots used in the space experiment;therefore, this method can be applied to genetically analyze astronauts’ hair samples.展开更多
The term “microgravity” is used to describe the “weightlessness” or “zero-g” circumstances that can only be found in space beyond earth’s atmosphere. Rhodobacter sphaeroides is a gram-negative purple phototroph...The term “microgravity” is used to describe the “weightlessness” or “zero-g” circumstances that can only be found in space beyond earth’s atmosphere. Rhodobacter sphaeroides is a gram-negative purple phototroph, used as a model organism for this study due to its genomic complexity and metabolic versatility. Its genome has been completely sequenced, and profiles of the differential gene expression under aerobic, semi-aerobic, and photosynthetic conditions were examined. In this study, we hypothesized that R. sphaeroides will show altered growth characteristics, morphological properties, and gene expression patterns when grown under simulated microgravity. To test that, we measured the optical density and colony-forming units of cell cultures grown under both microgravity and normal gravity conditions. Differences in the cell morphology were observed using scanning electron microscopy (SEM) images by measuring the length and the surface area of the cells under both conditions. Furthermore, we also identified homologous genes of R. spheroides using the differential gene expression study of Acidovorax under microgravity in our laboratory. Growth kinetics results showed that R. sphaeroides cells grown under microgravity experience a shorter log phase and early stationary phase compared to the cells growing under normal gravity conditions. The length and surface area of the cells under microgravity were significantly higher confirming that bacterial cells experience altered morphological features when grown under microgravity conditions. Differentially expressed homologous gene analysis indicated that genes coding for several COG and GO functions, such as metabolism, signal-transduction, transcription, translation, chemotaxis, and cell motility are differentially expressed to adapt and survive microgravity.展开更多
[ Objective] This study aimed to construct four-dimensional graphics of nucleotide sequences of six genes in rice （ GluB-6, GtuB-7, PDIL2, OsMPK1, OsCATC, OsCATA） and to conduct phase-space clustering, thus demonstr...[ Objective] This study aimed to construct four-dimensional graphics of nucleotide sequences of six genes in rice （ GluB-6, GtuB-7, PDIL2, OsMPK1, OsCATC, OsCATA） and to conduct phase-space clustering, thus demonstrating the relationship between the structure and function of rice genes. [ Method ] Base sequences were represented by four-dimensional graphics and clustered in the phase space. The relationship between clustering results and biological characteristics of these genes were analyzed. [ Result] Genes with similar four-dimensional graphics exhibit similar biological characteristics. [ Conclusion] Four-dimensional graphics of genes with different functions and base lengths present phase-space relationship with their biological functions, which provided an effective way for the prediction of gene function.展开更多
基金supported by the Key Program of the National Natural Science Foundation of China(No.59238151)the National Natural Science Foundation of China(No.50378013)the Program for the Youth of the National Natural Science Foundation of China(No.59308074)。
文摘Based on typo-morphological studies,this paper proposes the concept of “space gene” from the perspective of urban spatial development theory.Specifically,space gene refers to a unique and relatively stable pattern of spatial organization formed as a result of long-term interaction among the three dimensions:urban space,natural environment,and socio-culture.It conveys distinctive characteristics of different regions and contributes to a unique city identity and a harmonious relationship among the three dimensions.This paper points out that urban planning and design can be localized through the identification-analysis-guidance process of space genes,avoiding both the design scheme that does not respect culture and nature and the practice that a unified model is adopted to create same images in different cities,as well as prompting the directional turn of urban planning and design approaches from space form creation to space gene analysis.It provides an effective design path for a win-win result among urban development,natural protection,and cultural inheritance.Furthermore,the paper discusses the prospect of the Space GenBank Project.
文摘The use of hair roots as experimental samples has been a research focus for understanding the effects of spaceflight on astronauts, because it has many advantages, one of which is the fact that hair matrix cells actively divide in a hair follicle and sensitively reflect the physical conditions of the human body. In 2009, a research program focusing on the analysis of astronauts’ hairs was initiated to examine the effects of long-term spaceflight on the gene expression and mineral metabolism in the human body. Since the number of samples per astronaut is limited to 5 strands of hairs at each sampling point, due to the ethical viewpoint of astronauts or limited resources in space, it is important to develop an effective method for the molecular analysis of small amounts of hair roots. In this study, mRNA successfully extracted from 1, 5, and 10 hair follicles was amplified and subjected to the DNA microarray analysis to compare the gene expression within subjects. The results indicated that (1) it was possible to perform the genetic analysis on hair samples stored at -80℃, even without a fixation buffer and (2) the newly modified method of mRNA extraction and analysis was effective in detecting differential gene expression in samples containing only 5 hairs. In conclusion, RNA was efficiently extracted from 5 hair roots, which is the same number of hair roots used in the space experiment;therefore, this method can be applied to genetically analyze astronauts’ hair samples.
文摘The term “microgravity” is used to describe the “weightlessness” or “zero-g” circumstances that can only be found in space beyond earth’s atmosphere. Rhodobacter sphaeroides is a gram-negative purple phototroph, used as a model organism for this study due to its genomic complexity and metabolic versatility. Its genome has been completely sequenced, and profiles of the differential gene expression under aerobic, semi-aerobic, and photosynthetic conditions were examined. In this study, we hypothesized that R. sphaeroides will show altered growth characteristics, morphological properties, and gene expression patterns when grown under simulated microgravity. To test that, we measured the optical density and colony-forming units of cell cultures grown under both microgravity and normal gravity conditions. Differences in the cell morphology were observed using scanning electron microscopy (SEM) images by measuring the length and the surface area of the cells under both conditions. Furthermore, we also identified homologous genes of R. spheroides using the differential gene expression study of Acidovorax under microgravity in our laboratory. Growth kinetics results showed that R. sphaeroides cells grown under microgravity experience a shorter log phase and early stationary phase compared to the cells growing under normal gravity conditions. The length and surface area of the cells under microgravity were significantly higher confirming that bacterial cells experience altered morphological features when grown under microgravity conditions. Differentially expressed homologous gene analysis indicated that genes coding for several COG and GO functions, such as metabolism, signal-transduction, transcription, translation, chemotaxis, and cell motility are differentially expressed to adapt and survive microgravity.
基金Supported by Eleventh Five-Year Development Planning for Instructional Science in Hubei Province(2006B131)
文摘[ Objective] This study aimed to construct four-dimensional graphics of nucleotide sequences of six genes in rice （ GluB-6, GtuB-7, PDIL2, OsMPK1, OsCATC, OsCATA） and to conduct phase-space clustering, thus demonstrating the relationship between the structure and function of rice genes. [ Method ] Base sequences were represented by four-dimensional graphics and clustered in the phase space. The relationship between clustering results and biological characteristics of these genes were analyzed. [ Result] Genes with similar four-dimensional graphics exhibit similar biological characteristics. [ Conclusion] Four-dimensional graphics of genes with different functions and base lengths present phase-space relationship with their biological functions, which provided an effective way for the prediction of gene function.
