Molecular structure characterization of middle-high rank coal via^(13)C NMR,XPS,and FTIR spectroscopy

Elemental analysis,nuclear magnetic resonance carbon spectroscopy(^(13)C-NMR),X-ray photoelectron spectroscopy(XPS)and Fourier transform infrared spectroscopy(FTIR)experiments were carried out to determine the existence of aromatic structure,heteroatom structure and fat structure in coal.MS(materials studio)software was used to optimize and construct a 3D molecular structure model of coal.A method for establishing a coal molecular structure model was formed,which was“determination of key structures in coal,construction of planar molecular structure model,and optimization of three-dimensional molecular structure model”.The structural differences were compared and analyzed.The results show that with the increase of coal rank,the dehydrogenation of cycloalkanes in coal is continuously enhanced,and the content of heteroatoms in the aromatic ring decreases.The heteroatoms and branch chains in the coal are reduced,and the structure is more orderly and tight.The stability of the structure is determined by theπ-πinteraction between the aromatic rings in the nonbonding energy EN.Key Stretching Energy The size of EB determines how tight the structure is.The research results provide a method and reference for the study of the molecular structure of medium and high coal ranks.

Differential diagnosis of Crohn’s disease and intestinal tuberculosis based on ATR-FTIR spectroscopy combined with machine learning

BACKGROUND Crohn’s disease(CD)is often misdiagnosed as intestinal tuberculosis(ITB).However,the treatment and prognosis of these two diseases are dramatically different.Therefore,it is important to develop a method to identify CD and ITB with high accuracy,specificity,and speed.AIM To develop a method to identify CD and ITB with high accuracy,specificity,and speed.METHODS A total of 72 paraffin wax-embedded tissue sections were pathologically and clinically diagnosed as CD or ITB.Paraffin wax-embedded tissue sections were attached to a metal coating and measured using attenuated total reflectance fourier transform infrared spectroscopy at mid-infrared wavelengths combined with XGBoost for differential diagnosis.RESULTS The results showed that the paraffin wax-embedded specimens of CD and ITB were significantly different in their spectral signals at 1074 cm^(-1) and 1234 cm^(-1) bands,and the differential diagnosis model based on spectral characteristics combined with machine learning showed accuracy,specificity,and sensitivity of 91.84%,92.59%,and 90.90%,respectively,for the differential diagnosis of CD and ITB.CONCLUSION Information on the mid-infrared region can reveal the different histological components of CD and ITB at the molecular level,and spectral analysis combined with machine learning to establish a diagnostic model is expected to become a new method for the differential diagnosis of CD and ITB.

Semi-quantitative analysis of the structural evolution of mesophase pitch-based carbon foams by Raman and FTIR spectroscopy

Graphitized carbon foams(GFms)were prepared using mesophase pitch(MP)as a raw material by foaming(450℃),pre-oxidation(320℃),carbonization(1000℃)and graphitization(2800℃).The differences in structure and properties of GFms prepared from different MP precursors pretreated by ball milling or liquid phase extraction were investigated and compared,and semi-quantitative calculations were conducted on the Raman and FTIR spectra of samples at each preparation stage.Semi-quantitat-ive spectroscopic analysis provided detailed information on the structure and chemical composition changes of the MP and GFm de-rived from it.Combined with microscopic observations,the change from precursor to GFm was analyzed.The results showed that ball milling concentrated the distribution of aromatic molecules in the pitch,which contributed to uniform foaming to give a GFm with a uniform pore distribution and good properties.Liquid phase extraction helped remove light components while retaining large aromatics to form graphitic planes with the largest average size during post-treatment to produce a GFm with the highest degree of graphitization and the fewest open pores,giving the best compression resistance(2.47 MPa),the highest thermal conductivity(64.47 W/(m·K))and the lowest electrical resistance(13.02μΩ·m).Characterization combining semi-quantitative spectroscopic ana-lysis with microscopic observations allowed us to control the preparation of the MP-derived GFms.

Assessment of portable FTIR and Raman spectroscopy for the detection of 2,3-dimethyl-2,3-dinitrobutane(DMDNB)in plastic explosives

The Marplex Convention was established to prevent the manufacture of unmarked plastic explosives and stipulates that a volatile detection agent must be added at the time of manufacture.However,to-date,laboratory testing remains the internationally accepted practice for identifying and quantifying the taggants stipulated in the Convention.In this project,portable FTIR and Raman instruments were tested for their ability to detect 2,3-dimethyl-2,3-dinitrobutane(DMDNB),the chemical marker incorporated in plastic explosives that are manufactured within Australia.While both FTIR and Raman instruments detected solid DMDNB(98%purity),field analysis of plastic explosives at an Australian Defence establishment showed that both FTIR and Raman spectra were matched the relevant explosive(RDX or PETN),rather than the DMDNB taggant.For all three plastic explosives tested,the concentration of DMDNB was measured by SPME-GC-MS to be between 1.8 and 2%,greater than the minimum 1%concentration stipulated by the Marplex Convention.Additional testing with a plastic explosive analogue confirmed that the minor absorption peaks that would characterize low concentrations of DMDNB were masked by absorption bands from other compounds within the solid.Thus,while both FTIR and Raman spectroscopy are suitable for detection of plastic explosives,neither rely on the presence of DMDNB for detection.It is likely that similar results would be found for other taggants stipulated by the Marplex Convention,given they are also present in concentrations less than 1%.

Development and prospect of near-infrared spectroscopy-assisted schizophrenia diagnosis based on bibliometrics

In this editorial,we comment on the recent article by Fei et al exploring the field of near-infrared spectroscopy(NIRS)research in schizophrenia from a bibliometrics perspective.In recent years,NIRS has shown unique advantages in the auxiliary diagnosis of schizophrenia,and the introduction of bibliometrics has provided a macro perspective for research in this field.Despite the opportunities brought about by these technological developments,remaining challenges require multidi-sciplinary approach to devise a reliable and accurate diagnosis system for schizo-phrenia.Nonetheless,NIRS-assisted technology is expected to contribute to the division of methods for early intervention and treatment of schizophrenia.

基于FTIR的黄芪药材质量评价研究

目的 建立黄芪药材的红外原始指纹图谱与量子指纹图谱,为其质量控制提供参考。方法 采用傅里叶变换红外光谱仪采集35批黄芪药材的红外指纹图谱,经数据处理建立黄芪的红外量子指纹图谱,采用系统指纹定量法以及t检验比较两种指纹图谱是否存在差异,并对量子指纹图谱的共有量子峰面积进行系统聚类分析。结果 黄芪药材的红外指纹图谱与量子指纹图谱间并不存在显著性差异,系统指纹定量法将35批黄芪分为8个质量等级,系统聚类分析表明35批黄芪的质量可聚为两类。结论 红外量子指纹图谱能够提供大量特征信息,系统指纹定量法能够全面、准确、直观地将黄芪药材分为8个质量等级,两者结合可以实现对黄芪等中药材质量的全面评价。

Discrimination of foodborne pathogenic bacteria using synchrotron FTIR microspectroscopy

Traditional Fourier transform infrared(FTIR)spectroscopy has been recognized as a valuable method to characterize and classify kinds of microorganisms.In this study,combined with multivariate statistical analysis,synchrotron radiation-based FTIR(SR-FTIR) microspectroscopy was applied to identify and discriminate ten foodborne bacterial strains.Our results show that the whole spectra(3000-900 cm^(-1)) and three subdivided spectral regions(3000-2800,1800-1500 and 1200-900 cm^(-1),representing lipids,proteins and polysaccharides,respectively) can be used to type bacteria.Either the whole spectra or the three subdivided spectra are good for discriminating the bacteria at levels of species and subspecies,but the whole spectra should be given preference at the genus level.The findings demonstrate that SR-FTIR microspectroscopy is a powerful tool to identify and classify foodborne pathogenic bacteria at the genus,species and subspecies level.

Comparison Between Conventional Convective Heating and Microwave Heating: An FTIR Spectroscopy Study of the Effects of Microwave Oven Cooking of Bovine Breast Meat

The effects of microwave energy and conventional convective heating on bovine meat were studied in the mid-infrared region by FTIR spectroscopy, to highlight the differences between the two cooking methods. Samples of 100 g of bovine breast meat were cooked using three treatments: heating in a conventional electric oven at the temperature of 165°C for 16 min, heating in a microwave oven at 800 W for 95 sec, and heating in the same microwave oven at 650 W for 160 sec. Significant decreases in intensity of vibration bands of CH2 methylene group at 1921 and 1853 cm-1 and of the carbonyl band at 1742 cm-1 were observed after microwave heating with respect to heating in a conventional oven, showing that Maillard reaction occurs partially using microwave oven. Spectral analysis in the amide I region after microwave cooking at 800 W for 95 sec showed that an increase in intensity occurred in the region from 1665 to 1690 cm-1 which can be attributed to β-turns, characteristic of disorder processes in the protein. Further analysis after microwave cooking at 650 W for 160 sec evidenced major increase in intensity of β-turns content and the appearance of significant increases of β-sheet component at 1635 cm-1 and 1695 cm-1 that can be attributed to aggregated β-sheets structures.

Approaching intermolecular interactions and membrane activity of taxol by FTIR Spectroscopy-implications for anticancer therapeutics

We studied the incorporation of hydrophobic drug Taxol into a solid lipid matrices by FTIR spectroscopy. Lipid arrays containing different molar fractions of the drug were made and deposited on the spectrometer glass window substrates for obtaining multilayer stacks. The drug induced an alteration of lipid array spacings, indicating the drug-lipid recognition. Using excess amounts of Taxol provide information on extrapolations on its cellular solubility in biomembranes. The data obtained could be used further for developing novel anticancer drug formulations, as well as for elucidating its novel cellular pharmacological targets.

Characterization of Cellulosic Fibers by FTIR Spectroscopy for Their Further Implementation to Building Materials

Nowadays, the material recycling is a growing trend in development of building materials and therefore using of secondary raw materials for production new building materials is in accordance with sustainable development in civil engineering. Therefore, it is increasingly becoming crucial to accelerate the transition from application of non-renewable sources of raw materials to renewable raw materials. One fast renewable resource is natural plant fibers. The use of the cellulosic fibers as environmentally friendly material in building products contributes to the environmental protection and saves non-renewable resources of raw materials. Wood fibers and recycled cellulose fibers of waste paper appear as suited reinforcing elements for cement-based materials. In this paper, there is used application of Fourier transform infrared spectroscopy (FTIR) on cellulose fibers coming from different sources. FTIR spectra of cellulose fiber samples are investigated and compared with reference sample of cellulose.

Synchrotron FTIR spectroscopy reveals molecular changes in Escherichia coli upon Cu^2＋ exposure

Copper ions(e.g.,Cu^(2+)) have outstanding antibacterial properties,but the exact mechanism is rather complex and not fully understood.In this work,synchrotron Fourier transform infrared(FTIR) spectroscopy was used as an analytical tool to investigate the CuCl_2-induced biochemical changes in Escherichia coli.Our spectral measurements indicated that this technique is sensitive enough to detect changes in membrane lipids,nucleic acids,peptidoglycans and proteins of Cu^(2+)-treated bacteria.Interestingly,for short-time treated cells,the effects on phospholipid composition were clearly shown,while no significant alterations of proteins,nucleic acids and peptidoglycans were found.PeakForce quantitative nano-mechanics mode atomic force microscopy(AFM)confirmed the changes in the topography and mechanical properties of bacteria upon the Cu^(2+) exposure.This study demonstrated that FTIR spectroscopy combined with AFM can provide more comprehensive evaluation on the biochemical and mechanical responses of bacteria to copper.

Authentication of <i>Rothmannia whitfieldii</i>Dye Extract with FTIR Spectroscopy

Extraction of dye from dry fruit of Rothmannia whitfieldii was carried out using four different extraction methods. Solvent and acid extraction methods gave a colourless supernatant solution after extraction time of 45 minutes at 60°C. The alkali method gave a deep brown coloured supernatant solution while the aqueous method gave a dark coloured supernatant solution after extraction under the same conditions. From the result of the FTIR spectroscopy characterization of the coloured solutions and the dry powder of Rothmannia whitfieldii fruit, it was observed that only the alkali method extracted what can be called a dye with likely presence of tannins. The result also showed that the possible functional groups present in the supernatant solution after aqueous extraction are same with the functional groups present in the dry pulverized Rothmannia whitfieldii fruit. Hence, aqueous method did not extract any dye. Similarly, a mixture of the solution after aqueous extraction with drops of alkali solution produced a deep brown coloured solution indicating solubility of the dye component in alkali media.

Study of Changes to the Organic Functional Groups of a High Volatile Bituminous Coal during Organic Acid Treatment Process by FTIR Spectroscopy

A high volatile bituminous coal was subjected to a series of organic acid treatment in steps using citric acid (1 hr and 2 hr) and buffered EDTA with acetic acid (1 to 3 hr) at room temperature. Leaching was performed with acetic acid (2N) also for 1 hr. Citric acid procedure reduced the mineral matter below 1.94%. Calcites and aluminates are completely removed along with substantial quantity of silicates by citric acid leaching. The change in absorption of organic functional groups and mineral matter in coal samples were studied using Fourier transform infrared spectroscopy (FTIR). Analysis indicated that oxygen containing species were decreased in the coal structure during acetic acid and citric acid (40%) procedure and buffered EDTA 3 hours leaching. As the period of leaching with buffered EDTA increased from 1 hr to 3 hr, organic functional groups and mineral functional groups decreased its intensity. The results indicated that the described acid treatment procedures with citric acid have measurable effects on the coal structure.

Study of Human Serum Albumin Adsorption and Conformational Change on DLC and Silicon Doped DLC Using XPS and FTIR Spectroscopy

Diamond-like carbon (DLC) coatings are extremely useful for creating biocompatible surfaces on medical implants. DLC and silicon doped DLC synthesised on silicon wafer substrate by using plasma enhanced chemical vapour deposition (PECVD). The effects of surface morphology on the interaction of HSA with doped and undoped DLC films have been investigated. The chemical composition of the surface before and after adsorption was analysed using X-ray photoelectron spectroscopy (XPS) and Fourier transform infrared (FTIR). Results showed that silicon incorporation DLC tends to increase of sp3/sp2 hybridization ratio by decreasing sp2 hybridized carbon bonding configurations. Following exposure to solutions containing (0.250 μg/ml) HSA, the results indicated that significant changes in the C, N and O levels on the surfaces with reducing of the Si2p band at 100 eV. From FTIR spectrum, the peaks occur the following functional groups were assigned as amide I and II groups at 1650 cm-1 and 1580 cm-1. Both XPS and FTIR spectroscopy confirm that HSA was bound onto the surfaces of the DLC and Si-DLC films via interaction of ionized carboxyl groups and the amino group did not play a significant role in the adsorption of protein. These results from peak intensity show that an adsorbed layer of HSA is higher at high level (19%) silicon doping. Therefore doping of DLC may provide an approach to controlling the protein adsorption.

The application of Fourier transform mid-infrared(FTIR) spectroscopy to identify variation in cell wall composition of Setaria italica ecotypes

Cell wall composition in monocotyledonous grasses has been identified as a key area of research for developing better feedstocks for forage and biofuel production.Setaria viridis and its close domesticated relative Setaria italica have been chosen as suitable monocotyledonous models for plants possessing the C4 pathway of photosynthesis including sorghum,maize,sugarcane,switchgrass and Miscanthus×giganteus.Accurate partial least squares regression（PLSR）models to predict S.italica stem composition have been generated,based upon Fourier transform mid-infrared（FTIR）spectra and calibrated with wet chemistry determinations of ground S.italica stem material measured using a modified version of the US National Renewable Energy Laboratory（NREL）acid hydrolysis protocol.The models facilitated a high-throughput screening analysis for glucan,xylan,Klason lignin and acid soluble lignin（ASL）in a collection of 183 natural S.italica variants and clustered them into classes,some possessing unique chemotypes.The predictive models provide a highly efficient screening tool for large scale breeding programs aimed at identifying lines or mutants possessing unique cell wall chemotypes.Genes encoding key catalytic enzymes of the lignin biosynthesis pathway exhibit a high level of conservation with matching expression profiles,measured by RT-q PCR,among accessions of S.italica,which closely mirror profiles observed in the different developmental regions of an elongating internode of S.viridis by RNASeq.

Quantitative Assessment of Amino Acid Damage upon keV Ion Beam Irradiation Through FTIR Spectroscopy

Ion beam irradiation induces important biological effects and it is a long-standing task to acquire both qualitative and quantitative assessment of these effects. One effective way in the investigation is to utilize Fourier transformation infrared （FTIR） spectroscopy because it can offer sensitive and non-invasive measurements. In this paper a novel protocol was employed to prepare biomolecular samples in the form of thin and transversely uniform solid films that were suitable for both infrared and low-energy ion beam irradiation experiments. Under the irradiation of N^＋ and Ar^＋ ion beams of 25 keV with fluence ranging from 5×10^15 ions/cm^2 to 2.5×10^16 ions/cm^2, the ion radio-sensitivity of four amino acids, namely, glycine, tyrosine, methionine and phenylalanine, were evaluated and compared. The ion beam irradiation caused biomolecular decomposition accompanied by molecular desorption of volatile species and the damage was dependent on ion type, fiuence, energy and types of amino acids. The effectiveness of application of FTIR spectroscopy to the quantitative assessment of biomolecular damage dose effect induced by low-energy ion radiation was thus demonstrated.

Detecting Nitrous Oxide in Complex Mixtures Using FTIR Spectroscopy: Silage Gas

Nitrous oxide (N2O) is a greenhouse gas with about 300 times the global warming potential (GWP) of carbon dioxide (CO2). It is emitted from a wide range of sources and is responsible for about 6% of anthropogenic US greenhouse gas emissions. Analytical techniques are needed that can measure concentrations of N2O rapidly and inexpensively in sources that are also emitting other compounds that may interfere with the analytical process. In this work, we demonstrate the use of Fourier Transform Infrared (FTIR) spectroscopy to analyze N2O in the complex mixture of gases produced during the early phase of the silage making process. Silage gas samples were collected into Tedlar bags from the bucket silos during the first week of corn ensiling. A bag of the silage gas was analyzed using a Bruker FTIR spectrometer coupled with a long optical path length White Cell. First, N2O infrared absorption bands were identified in the FTIR spectra of the silage gas by comparing them to both standard N2O gas and simulated infrared spectra which confirmed that N2O was present in the silage gas. Then, N2O concentration in the silage gas was derived from the FTIR spectra using LINEFIT program. It was demonstrated that FTIR spectroscopy is a viable method for measuring N2O concentrations in the silage gas.

利用ATR-FTIR研究脂质纳米粒的鼻黏液渗透性

鼻黏液是影响疫苗和药物经鼻吸收的首要屏障。由于干扰因素复杂多变,在体评价黏液渗透性较难实施,多采用体外评价。现有的药物鼻黏液渗透性检测方法如细胞模型法、多粒子示踪技术等,存在细胞培养周期长、操作繁琐、成本高、可获得信息少且需要进行荧光标记等不足,对鼻黏膜制剂的体外评价具有很大的局限性,因此迫切需要建立一种快速、简便、灵敏的鼻黏膜制剂黏液渗透性评价方法。基于衰减全反射-傅里叶红外光谱(ATR-FTIR)对药物结构以及粘蛋白二级结构变化的敏感性,利用其对不同性质(粒径与电荷)脂质体的鼻黏液渗透性进行研究,通过FTIR图谱分析不同脂质纳米粒与黏液中粘蛋白的相互作用,建立了鼻黏膜制剂黏液渗透性的体外评价方法。方法学研究表明,对于聚乙二醇10000(PEG10000)、壳聚糖、海藻酸钠脂质体,该方法线性关系分别为Y=2.3866X+2.154、Y=1.8703X+0.2789、Y=1.13014X+0.0609,线性相关系数分别为0.9958、0.9945、0.9909,精密度RSD值分别为0.62%、0.73%、0.95%;重复性试验中RSD值分别为0.83%、0.97%、0.88%,说明该方法线性关系良好、精密度高、重复性好,可用于体外评价药物制剂在黏液中的渗透性。研究结果表明,利用ATR-FTIR在不同时间内扫描样品可得到不同脂质体制剂样品的强度增加的吸收带。对于不同粒径PEG脂质体而言,粒径越小其黏液渗透性越强;对于不同电荷脂质体而言,壳聚糖脂质体黏液渗透性最弱,海藻酸钠次之,PEG脂质体黏液渗透性最强。进一步研究表明,不同电荷脂质体黏液渗透性的差异源于其与粘蛋白相互作用,该结论可通过分析粘蛋白酰胺Ⅰ带所包含的各二级结构信息得到。综上,基于ATR-FTIR所建立的体外评价方法灵敏简便,可作为多种不同制剂的鼻黏液渗透性的快速测定,经改进后还可用于药物制剂在其他黏液中的渗透性评价,应用前景广阔。

Chemometric Feature Selection and Classification of <i>Ganoderma lucidum</i>Spores and Fruiting Body Using ATR-FTIR Spectroscopy

Ganoderma lucidum(G. lucidum) spores as a valuable Chinese herbal medicine have vast marketable prospect for its bioactivities and medicinal efficacy. This study aims at the development of an effective and simple analytical method to distinguish G. lucidum spores from its fruiting body, which is of essential importance for the quality control and fast discrimination of raw materials of Chinese herbal medicine. Attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy combined with the appropriate chemometric methods including penalized discriminant analysis, principal component discriminant analysis and partial least squares discriminant analysis has been proven to be a rapid and powerful tool for discrimination of G. lucidum spores and its fruiting body with classification accuracy of 99%. The model leads to a well-performed selection of informative spectral absorption bands which improve the classification accuracy, reduce the model complexity and enhance the quantitative interpretations of the chemical constituents of G. lucidum spores regarding its anticancer effects.

IN SITU MONITORING OF COORDINATION COPOLYMERIZATION OF BUTADIENE AND ISOPRENE VIA ATR-FTIR SPECTROSCOPY

FTIR spectroscopy in combination with a diamond tipped attenuated total reflectance （ATR） immersion probe was utilized to study in situ the copolymerization of butadiene （Bd） and isoprene （Ip） with neodymium-based catalyst in hexane. The relationship between the signal intensity of monomer and its concentration was investigated. The kinetic study of copolymerization of Bd and Ip was further conducted, and the monomer reactivity ratios were determined via in situ ATR FTIR. The signal band at 1010 cm^-1 was assigned to wagging vibration of Bd and its intensity was proportional to Bd concentration （[Bd]） in the range of 0.46-3.88 mol.L^-1. The signal bands at 890 and 989 cm^-1 were assigned to wagging vibration of Ip and the signal intensity was also proportional to Ip concentration （[Ip]） in the range of 0.08-4.73 mol·L^-1 at 890 cm^-1 and 0.08-7.49 mol·L^-1 at 989 cm^-1, respectively. Thus the signal band at 1010 cm^-1 was chosen to monitor Bd concentration and bands at 989 and 890 cm^-1 to monitor Ip concentration during the copolymerization, respectively. It was demonstrated that the conversions of Bd and Ip calculated from FTIR data agreed very well with those obtained gravimetrically. The poiymerization rates were first order with respect to both [Bd] and [Ip], respectively at different polymerization temperatures. The apparent propagation activation energy for Bd and Ip could be determined to be 54.4 kJ·mol^-1 and 57.7 kJ·mol^-1, respectively. The monomer reactivity ratios were calculated to be 1.08 for Bd （rBd） and 0.48 for IP （rIp） based on FTIR data. The Bd-Ip copolymer products with random sequence could be obtained with only one glass transition temperature.