The stiffness and strength of extracellular (EC) region of cadherin are proposed to be two important mechanical properties both for cadherin as a mechanotransductor and for the formation of cell-cell adhesion. In th...The stiffness and strength of extracellular (EC) region of cadherin are proposed to be two important mechanical properties both for cadherin as a mechanotransductor and for the formation of cell-cell adhesion. In this study, we quantitatively characterized the stiffness and strength of EC structure when it binds with different types of ions by molecular dynamics simulations. Resuits show that EC structure exhibits a rod-like shape with high stiffness and strength when it binds with the bivalent ions of calcium or magnesium. However, it switches to a soft and collapsed conformation when it binds with the monova- lent ions of sodium or potassium. This study sheds light on the important role of the bivalent ions of calcium in the physiological function of EC.展开更多
Cell adhesion and migration are basic physiolog- ical processes in living organisms. Cells can actively probe their mechanical micro-environment and respond to the ex- ternal stimuli through cell adhesion. Cells need ...Cell adhesion and migration are basic physiolog- ical processes in living organisms. Cells can actively probe their mechanical micro-environment and respond to the ex- ternal stimuli through cell adhesion. Cells need to move to the targeting place to perform function via cell migration. For adherent cells, cell migration is mediated by cell-matrix adhesion and cell-cell adhesion. Experimental approaches, especially at early stage of investigation, are indispensable to studies of cell mechanics when even qualitative behaviors of cell as well as fundamental factors in cell behaviors are unclear. Currently, there is increasingly accumulation of ex- perimental data of measurement, thus a quantitative formula- tion of cell behaviors and the relationship among these fun- damental factors are highly needed. This quantitative under- standing should be crucial to tissue engineering and biomed- ical engineering when people want to accurately regulate or control cell behaviors from single cell level to tissue level. In this review, we will elaborate recent advances in the ex- perimental and theoretical studies on cell adhesion and mi- gration, with particular focuses laid on recent advances in experimental techniques and theoretical modeling, through which challenging problems in the cell mechanics are sug- gested.展开更多
The wetting behavior of dust by droplets is investigated by experiments and numerical simulation methods.Experimental observation reveals that the surface of a coal slice is hydrophilic in nature,while surfaces of coa...The wetting behavior of dust by droplets is investigated by experiments and numerical simulation methods.Experimental observation reveals that the surface of a coal slice is hydrophilic in nature,while surfaces of coal dust stacks are hydrophobic.We show that water droplets settle on these surfaces following the Cassie-Baxter wetting model,as supported by theoretical,numerical analyses and experimental observations,i.e.water droplets only wet the first layer of coal dust.Our numerical simulation results also show that a water droplet could not enclose any coal dust inside it and many coal dust particles are adhered with a hexagonal close packing on a large water droplet.Based on these results,we conclude that the surface area of water droplets is an important factor on their wetting and capturing coal dust,and producing smaller water droplets can improve the efficiency of settling dust.展开更多
The field of mechanics of biological and bio-inspired materials underwent an exciting development over the past several years, which made it stand at the cutting edge of both engineering mechanics and biomechanics. As...The field of mechanics of biological and bio-inspired materials underwent an exciting development over the past several years, which made it stand at the cutting edge of both engineering mechanics and biomechanics. As an intriguing interdisciplinary research field, it aims at elucidating the fundamental principles in nature's design of strong, multi-functional and smart Materials by focusing on the assembly, deformation, stability and failure of the materials.展开更多
Anti-parallel β-sheet crystallite as the main component of silk fibroin has attracted much attention due to its superior mechanical properties. In this study, we examine the processes of pulling a peptide chain from ...Anti-parallel β-sheet crystallite as the main component of silk fibroin has attracted much attention due to its superior mechanical properties. In this study, we examine the processes of pulling a peptide chain from β-sheet crystallite using steered molecular dynamics simulations to investigate the rupture behavior of the crystallite. We show that the failure of β-sheet crystallite was accompanied by a propagation of instability of hydrogen-bonds (H-bonds) in the crystallite. In addition, we find that there is an optimum size of the crystallite at which the H-bonds can work cooperatively to achieve the highest shear strength. In addition, we find that the stiffness of loading device and the loading rates have significant effects on the rupture behavior of β-sheet crystallite. The stiff loading device facilitates the rebinding of the Hbond network in the stick-slip motion between the chains, while the soft one suppresses it. Moreover, the rupture force of β-sheet crystallites decreases with loading rate. Particularly, when the loading rate decreases to a critical value, the rupture force of the β-sheet crystallite becomes independent of the loading rates. This study provides atomistic details of rupture behaviors of β-sheet crystallite, and, therefore, sheds valuable light on the underlying mechanism of the superior mechanical properties of silk fibroin.展开更多
Transmembrane water pores are crucial for substance transport through cell membranes via membrane fusion, such as in neural communication. However, the molecular mechanism of water pore formation is not clear. In this...Transmembrane water pores are crucial for substance transport through cell membranes via membrane fusion, such as in neural communication. However, the molecular mechanism of water pore formation is not clear. In this study, we apply all-atom molecular dynamics and bias-exchange metadynamics simulations to study the process of water pore formation under an electric field. We show that water molecules can enter a membrane under an electric field and form a water pore of a few nanometers in diameter. These water molecules disturb the interactions between lipid head groups and the ordered arrangement of lipids. Following the movement of water molecules, the lipid head groups are rotated and driven into the hydrophobic region of the membrane. The reorientated lipid head groups inside the membrane form a hydrophilic surface of the water pore. This study reveals the atomic details of how an electric field influences the movement of water molecules and lipid head groups, resulting in water pore formation.展开更多
Biological materials such as bone, tooth, and nacre are load-bearing nanocomposites composed of mineral and protein. Since the mineral crystals often have slender geometry, the nanocomposites are susceptible to buckle...Biological materials such as bone, tooth, and nacre are load-bearing nanocomposites composed of mineral and protein. Since the mineral crystals often have slender geometry, the nanocomposites are susceptible to buckle under the compressive load. In this paper, we analyze the local buckling behaviors of the nanocomposite structure of the biological materials using a beam-spring model by which we can consider plenty of mineral crystals and their interaction in our analysis compared with existing studies. We show that there is a transition of the buckling behaviors from a local buckling mode to a global one when we continuously increase the aspect ratio of mineral, leading to an increase of the buckling strength which levels off to the strength of the composites reinforced with continuous crystals. We find that the contact condition at the mineral tips has a striking effect on the local buckling mode at small aspect ratio, but the effect diminishes when the aspect ratio is large. Our analyses also show that the staggered arrangement of mineral plays a central role in the stability of the biological nanocomposites.展开更多
Curvature is one of the most important features of lipid membranes in living cells,which significantly influences the structure of lipid membranes and their interaction with proteins.Taken the human islet amyloid poly...Curvature is one of the most important features of lipid membranes in living cells,which significantly influences the structure of lipid membranes and their interaction with proteins.Taken the human islet amyloid polypeptide(h IAPP),an important protein related to the pathogenesis of type II diabetes,as an example,we performed molecular dynamics(MD)simulations to study the interaction between the protein and the lipid structures with varied curvatures.We found that the lipids in the high curvature membrane pack loosely with high mobility.The h IAPP initially forms H-bonds with the membrane surface that anchored the protein,and then inserts into the membrane through the hydrophobic interactions between the residues and the hydrophobic tails of the lipids.h IAPP can insert into the membrane more deeply with a larger curvature and with a stronger binding strength.Our result provided important insights into the mechanism of the membrane curvature-dependent property of proteins with molecular details.展开更多
In this study,a theoretical model was established for predicting the equilibrium shape of the droplet on flat and spherical surfaces.The theoretical equilibrium shape of heavy droplets could be obtained once contact a...In this study,a theoretical model was established for predicting the equilibrium shape of the droplet on flat and spherical surfaces.The theoretical equilibrium shape of heavy droplets could be obtained once contact angle and volume of droplets were given.It showed that the predictions of the theoretical flat model were in good agreement with the shape obtained by Surface Evolver when the contact angle is below 120 and the droplet size is on the order of capillary length.This available range will decrease and increase when the heavy droplet is on convex and concave spherical surface,respectively,in contrast to that on flat surface.The available range will decrease more for higher curvature of convex spherical surfaces.展开更多
Recent studies have shown that the triple-phase contact line has critical effect on the contact angle hysteresis of surfaces.In this study,patterned surfaces with various surface structures of different area fractions...Recent studies have shown that the triple-phase contact line has critical effect on the contact angle hysteresis of surfaces.In this study,patterned surfaces with various surface structures of different area fractions were prepared by electron etching on a silicon wafer.The advancing angle,receding angle and hysteresis angle of these surfaces were measured.Our experimental results showed that while the geometry of microstructure and contact line have a minor effect on the advancing angle,they have a significant effect on the receding angle and thus the hysteresis angle.We have shown that the effect of microstructure and the contact line can be described by a quantitative parameter termed the triple-phase line ratio.The theoretical predictions were in good agreement with our experimental results.展开更多
Silk protein builds one of the strongest natural fibers based on its complex nanocomposite structures.However,the mechanical performance of silk protein,related to its molecular structure and packing is still elusive....Silk protein builds one of the strongest natural fibers based on its complex nanocomposite structures.However,the mechanical performance of silk protein,related to its molecular structure and packing is still elusive.In this study,we constructed an atomistic silk protein network model,which reproduces the extensive connection topology of silk protein with structure details of theβ-sheet crystallites and amorphous domains.With the silk protein network model,we investigated the structure evolution and stress distribution of silk protein under external loading.We found a pre-stretching treatment during the spinning process can improve the strength of silk protein.This treatment improves the properties of silk protein network,i.e.,increases the number of nodes and bridges,makes the nodes distributed homogeneously,and induces the bridges in the network well aligned to the loading direction,which is of great benefit to the mechanical performances of silk protein.Our study not only provides a realized atomistic model for silk protein network that well represents the structures and deformations of silk proteins under loading,but also gains deep insights into the mechanism how the pre-loading on silk proteins during spinning improves the mechanical properties of silk fibers.展开更多
Graphene-based materials exhibit unique properties that have been sought to utilize for various potential applications. Many studies suggest that graphene-based materials can be cytotoxic, which may be attributed to d...Graphene-based materials exhibit unique properties that have been sought to utilize for various potential applications. Many studies suggest that graphene-based materials can be cytotoxic, which may be attributed to destructive effects on cell membranes.However, there still are conflicting results regarding interactions between graphene-based materials and lipid membranes. Here,through cryo-electron microscopy(Cryo-EM) and dye-leakage experiments along with in silico methods, we found that graphene oxide nanosheets induce significant membrane damage, while the effect of pristine graphene is negligible. We revealed the importance of heterogeneous oxidization of graphene-based nanosheets in damaging vesicle membranes. Moreover, that not only the oxidization degree but also the oxidization loci and membrane tension play important roles in the cytotoxicity of the graphene-based nanosheets.展开更多
Although numerous studies have shown that the proteinα-synuclein(α-Syn)plays a central role in Parkinson’s disease,dementia with Lewy bodies,and other neurodegenerative diseases,the protein’s physiological functio...Although numerous studies have shown that the proteinα-synuclein(α-Syn)plays a central role in Parkinson’s disease,dementia with Lewy bodies,and other neurodegenerative diseases,the protein’s physiological function remains poorly understood.Furthermore,despite recent reports suggesting that,under the influence of Ca^(2+),α-Syn can interact with synaptic vesicles,the mechanisms underlying that interaction are far from clear.Thus,we used single-vesicle imaging to quantify the extent to which Ca^(2+)regulates nanoscale vesicle clustering mediated by α-Syn.Our results revealed not only that vesicle clustering requiredα-Syn to bind to anionic lipid vesicles,but also that different concentrations of Ca^(2+)exerted different effects on howα-Syn induced vesicle clustering.In particular,low concentrations of Ca^(2+)inhibited vesicle clustering by blocking the electrostatic interaction between the lipid membrane and the N terminus of α-Syn,whereas high concentrations promoted vesicle clustering,possibly due to the electrostatic interaction between Ca^(2+)and the negatively charged lipids that is independent of α-Syn.Taken together,our results provide critical insights intoα-Syn’s physiological function,and how Ca^(2+) regulates vesicle clustering mediated by α-Syn.展开更多
基金supported by the National Natural Science Foundation of China(11025208,11221202,11372042,and 11202026)the Excellent Young Scholars Research Fund of Beijing Institute of Technology
文摘The stiffness and strength of extracellular (EC) region of cadherin are proposed to be two important mechanical properties both for cadherin as a mechanotransductor and for the formation of cell-cell adhesion. In this study, we quantitatively characterized the stiffness and strength of EC structure when it binds with different types of ions by molecular dynamics simulations. Resuits show that EC structure exhibits a rod-like shape with high stiffness and strength when it binds with the bivalent ions of calcium or magnesium. However, it switches to a soft and collapsed conformation when it binds with the monova- lent ions of sodium or potassium. This study sheds light on the important role of the bivalent ions of calcium in the physiological function of EC.
基金supported by the National Natural Science Foundation of China(11221202and11025208)the State Key Laboratory of Explosive Science and Technology of Beijing Institute of Technology(YBKT12-05)
文摘Cell adhesion and migration are basic physiolog- ical processes in living organisms. Cells can actively probe their mechanical micro-environment and respond to the ex- ternal stimuli through cell adhesion. Cells need to move to the targeting place to perform function via cell migration. For adherent cells, cell migration is mediated by cell-matrix adhesion and cell-cell adhesion. Experimental approaches, especially at early stage of investigation, are indispensable to studies of cell mechanics when even qualitative behaviors of cell as well as fundamental factors in cell behaviors are unclear. Currently, there is increasingly accumulation of ex- perimental data of measurement, thus a quantitative formula- tion of cell behaviors and the relationship among these fun- damental factors are highly needed. This quantitative under- standing should be crucial to tissue engineering and biomed- ical engineering when people want to accurately regulate or control cell behaviors from single cell level to tissue level. In this review, we will elaborate recent advances in the ex- perimental and theoretical studies on cell adhesion and mi- gration, with particular focuses laid on recent advances in experimental techniques and theoretical modeling, through which challenging problems in the cell mechanics are sug- gested.
基金Supported by the National Natural Science Foundation of China under Grant No 10902015the Research Funds for the Doctoral Program of Higher Education of China under Grant No 20091101120001the Science Foundation for Excellent Youth Scholars of Beijing Institute of Technology.
文摘The wetting behavior of dust by droplets is investigated by experiments and numerical simulation methods.Experimental observation reveals that the surface of a coal slice is hydrophilic in nature,while surfaces of coal dust stacks are hydrophobic.We show that water droplets settle on these surfaces following the Cassie-Baxter wetting model,as supported by theoretical,numerical analyses and experimental observations,i.e.water droplets only wet the first layer of coal dust.Our numerical simulation results also show that a water droplet could not enclose any coal dust inside it and many coal dust particles are adhered with a hexagonal close packing on a large water droplet.Based on these results,we conclude that the surface area of water droplets is an important factor on their wetting and capturing coal dust,and producing smaller water droplets can improve the efficiency of settling dust.
文摘The field of mechanics of biological and bio-inspired materials underwent an exciting development over the past several years, which made it stand at the cutting edge of both engineering mechanics and biomechanics. As an intriguing interdisciplinary research field, it aims at elucidating the fundamental principles in nature's design of strong, multi-functional and smart Materials by focusing on the assembly, deformation, stability and failure of the materials.
基金supported by the National Science Foundation of China (Grants 11025208, 11372042, 11221202, and 11202026)the support from CSIRO-Intelligent Processing TCP+1 种基金CAFHS’ Capability Development FundCSIRO-Advanced Materials TCP
文摘Anti-parallel β-sheet crystallite as the main component of silk fibroin has attracted much attention due to its superior mechanical properties. In this study, we examine the processes of pulling a peptide chain from β-sheet crystallite using steered molecular dynamics simulations to investigate the rupture behavior of the crystallite. We show that the failure of β-sheet crystallite was accompanied by a propagation of instability of hydrogen-bonds (H-bonds) in the crystallite. In addition, we find that there is an optimum size of the crystallite at which the H-bonds can work cooperatively to achieve the highest shear strength. In addition, we find that the stiffness of loading device and the loading rates have significant effects on the rupture behavior of β-sheet crystallite. The stiff loading device facilitates the rebinding of the Hbond network in the stick-slip motion between the chains, while the soft one suppresses it. Moreover, the rupture force of β-sheet crystallites decreases with loading rate. Particularly, when the loading rate decreases to a critical value, the rupture force of the β-sheet crystallite becomes independent of the loading rates. This study provides atomistic details of rupture behaviors of β-sheet crystallite, and, therefore, sheds valuable light on the underlying mechanism of the superior mechanical properties of silk fibroin.
基金supported by the National Natural Science Foundation of China (Grants 11372042, 11221202, 11532009, and 11202026)
文摘Transmembrane water pores are crucial for substance transport through cell membranes via membrane fusion, such as in neural communication. However, the molecular mechanism of water pore formation is not clear. In this study, we apply all-atom molecular dynamics and bias-exchange metadynamics simulations to study the process of water pore formation under an electric field. We show that water molecules can enter a membrane under an electric field and form a water pore of a few nanometers in diameter. These water molecules disturb the interactions between lipid head groups and the ordered arrangement of lipids. Following the movement of water molecules, the lipid head groups are rotated and driven into the hydrophobic region of the membrane. The reorientated lipid head groups inside the membrane form a hydrophilic surface of the water pore. This study reveals the atomic details of how an electric field influences the movement of water molecules and lipid head groups, resulting in water pore formation.
基金supported by the National Natural Science Foundation of China(11025208,11372042,and 11221202)
文摘Biological materials such as bone, tooth, and nacre are load-bearing nanocomposites composed of mineral and protein. Since the mineral crystals often have slender geometry, the nanocomposites are susceptible to buckle under the compressive load. In this paper, we analyze the local buckling behaviors of the nanocomposite structure of the biological materials using a beam-spring model by which we can consider plenty of mineral crystals and their interaction in our analysis compared with existing studies. We show that there is a transition of the buckling behaviors from a local buckling mode to a global one when we continuously increase the aspect ratio of mineral, leading to an increase of the buckling strength which levels off to the strength of the composites reinforced with continuous crystals. We find that the contact condition at the mineral tips has a striking effect on the local buckling mode at small aspect ratio, but the effect diminishes when the aspect ratio is large. Our analyses also show that the staggered arrangement of mineral plays a central role in the stability of the biological nanocomposites.
基金supported by funds from the National Natural Science Foundation of China(Grants 11932017,11772054,11772055,and 11532009)supported by the Fundamental Research Funds for the Central Universities(Grant 2019QNA4060)。
文摘Curvature is one of the most important features of lipid membranes in living cells,which significantly influences the structure of lipid membranes and their interaction with proteins.Taken the human islet amyloid polypeptide(h IAPP),an important protein related to the pathogenesis of type II diabetes,as an example,we performed molecular dynamics(MD)simulations to study the interaction between the protein and the lipid structures with varied curvatures.We found that the lipids in the high curvature membrane pack loosely with high mobility.The h IAPP initially forms H-bonds with the membrane surface that anchored the protein,and then inserts into the membrane through the hydrophobic interactions between the residues and the hydrophobic tails of the lipids.h IAPP can insert into the membrane more deeply with a larger curvature and with a stronger binding strength.Our result provided important insights into the mechanism of the membrane curvature-dependent property of proteins with molecular details.
基金supported by the National Natural Science Foundation of China (Grant No. 10902015)the Research Funds for the Doctoral Program of Higher Education of China (Grant No. 20091101120001)
文摘In this study,a theoretical model was established for predicting the equilibrium shape of the droplet on flat and spherical surfaces.The theoretical equilibrium shape of heavy droplets could be obtained once contact angle and volume of droplets were given.It showed that the predictions of the theoretical flat model were in good agreement with the shape obtained by Surface Evolver when the contact angle is below 120 and the droplet size is on the order of capillary length.This available range will decrease and increase when the heavy droplet is on convex and concave spherical surface,respectively,in contrast to that on flat surface.The available range will decrease more for higher curvature of convex spherical surfaces.
基金supported by the National Natural Science Foundation of China (Grant Nos. 0902015 and 11025208)the Research Funds for the Doctoral Program of Higher Education of China (Grant Nos.20091101120001 and 20111101110003)
文摘Recent studies have shown that the triple-phase contact line has critical effect on the contact angle hysteresis of surfaces.In this study,patterned surfaces with various surface structures of different area fractions were prepared by electron etching on a silicon wafer.The advancing angle,receding angle and hysteresis angle of these surfaces were measured.Our experimental results showed that while the geometry of microstructure and contact line have a minor effect on the advancing angle,they have a significant effect on the receding angle and thus the hysteresis angle.We have shown that the effect of microstructure and the contact line can be described by a quantitative parameter termed the triple-phase line ratio.The theoretical predictions were in good agreement with our experimental results.
基金This work was supported by the National Natural Science Foundation of China(Grants Nos.12122212,11932017,11772054,and 11772055).
文摘Silk protein builds one of the strongest natural fibers based on its complex nanocomposite structures.However,the mechanical performance of silk protein,related to its molecular structure and packing is still elusive.In this study,we constructed an atomistic silk protein network model,which reproduces the extensive connection topology of silk protein with structure details of theβ-sheet crystallites and amorphous domains.With the silk protein network model,we investigated the structure evolution and stress distribution of silk protein under external loading.We found a pre-stretching treatment during the spinning process can improve the strength of silk protein.This treatment improves the properties of silk protein network,i.e.,increases the number of nodes and bridges,makes the nodes distributed homogeneously,and induces the bridges in the network well aligned to the loading direction,which is of great benefit to the mechanical performances of silk protein.Our study not only provides a realized atomistic model for silk protein network that well represents the structures and deformations of silk proteins under loading,but also gains deep insights into the mechanism how the pre-loading on silk proteins during spinning improves the mechanical properties of silk fibers.
基金supported by the National Basic Research Program of China(Grant No.2015CB856304)the National Natural Science Foundation of China(Grant Nos.11772054,11772055,11532009,and 11402145)+1 种基金Natural Science Foundation of Shanghai(Grant No.18ZR1418800)National Institutes of Health(Grant No.R35GM128837)
文摘Graphene-based materials exhibit unique properties that have been sought to utilize for various potential applications. Many studies suggest that graphene-based materials can be cytotoxic, which may be attributed to destructive effects on cell membranes.However, there still are conflicting results regarding interactions between graphene-based materials and lipid membranes. Here,through cryo-electron microscopy(Cryo-EM) and dye-leakage experiments along with in silico methods, we found that graphene oxide nanosheets induce significant membrane damage, while the effect of pristine graphene is negligible. We revealed the importance of heterogeneous oxidization of graphene-based nanosheets in damaging vesicle membranes. Moreover, that not only the oxidization degree but also the oxidization loci and membrane tension play important roles in the cytotoxicity of the graphene-based nanosheets.
基金We thank Dr.Chirlmin Joo for help in preparing the figure of the TIRFM setup and Dr.Tom Thompson for help with the CD experiments.B.B.,D.L.,L.Z.,W.D.,and B.J.were supported by funds from the National Natural Science Foundation of China(NSFC 11932017,11772054,11772055,11532009,11902051,and 31871031)W.D.was supported by the Sichuan Science and Technology Program(2019YJ0481)+1 种基金D.L.was supported by the Fundamental Research Funds for the Central Universities(Grant no.2019QNA4060)J.D.was supported by the Michael J Fox Foundation(ID 16661).
文摘Although numerous studies have shown that the proteinα-synuclein(α-Syn)plays a central role in Parkinson’s disease,dementia with Lewy bodies,and other neurodegenerative diseases,the protein’s physiological function remains poorly understood.Furthermore,despite recent reports suggesting that,under the influence of Ca^(2+),α-Syn can interact with synaptic vesicles,the mechanisms underlying that interaction are far from clear.Thus,we used single-vesicle imaging to quantify the extent to which Ca^(2+)regulates nanoscale vesicle clustering mediated by α-Syn.Our results revealed not only that vesicle clustering requiredα-Syn to bind to anionic lipid vesicles,but also that different concentrations of Ca^(2+)exerted different effects on howα-Syn induced vesicle clustering.In particular,low concentrations of Ca^(2+)inhibited vesicle clustering by blocking the electrostatic interaction between the lipid membrane and the N terminus of α-Syn,whereas high concentrations promoted vesicle clustering,possibly due to the electrostatic interaction between Ca^(2+)and the negatively charged lipids that is independent of α-Syn.Taken together,our results provide critical insights intoα-Syn’s physiological function,and how Ca^(2+) regulates vesicle clustering mediated by α-Syn.