Response of soil fungal community to long-term chromium contamination

To further study the fungal community in heavy metal contaminated ecosystems,soil samples were collected from an abandoned chromium(Cr)factory,and fungal community was analyzed by Illumina sequencing of Internal Transcribed Spacer(ITS)amplicons.The results showed that Cr contamination changed the composition and structure of soil fungal community,but didn’t change the diversity.Fungus showed various responses to Cr contamination.LEfSe analysis revealed that the biomarker changed a lot in the Cr-contaminated samples in comparison with that in the control samples.The changes in fungal community may be caused by the direct toxic effects on fungi by high concentration of Cr and the significant change in soil properties resulting from Cr contamination.Among all the Cr fractions,organic matter-bound Cr and exchangeable Cr showed significant effects on the fungal community and organic matter also showed a significant effect on soil fungal community.

Bioleaching of chalcopyrite by UV-induced mutagenized Acidiphilium cryptum and Acidithiobacillus ferrooxidans

The original strains Acidithiobacillusferrooxidans GF and Acidiphilium cryptum DXI-1 were isolated from the drainage of some caves riched in chalcopyrite in Dexing Mine in Jiangxi Province of China. The optimum temperature and pH for growth were 30 ℃ and 3.5 for Ac. cryptum DXI-1, and 30 ℃ and 2.0 for At. ferrooxidans GF, respectively. For Ac. cryptum DXI-1, the optimum UV radiating time was 60 s and the positive mutation rate was 22.5%. The growth curves show that Ac. cryptum after mutagenesis reached stationary phase within 60 h, which was 20 h earlier than the original strain. For At. ferrooxidans GF, the optimum mutation time was 60 s and the positive mutation rate was 35%. The most active UV-mutated strain At. ferrooxidans GF oxidized all the ferrous after 48 h. The bioleaching experiments showed that bioleaching with the mixture of UV-mutated strains of At. ferrooxidans GF and A c. cryptum DX1-1 （1：1） could extract 3.01 g/L of copper after 30 d, while the extracted copper was 2.63 g/L with the mixture of the original strains before UV-mutation. At the end of the bioleaching experiments, the proportion of the cell density in the cultures ofAc. cryptum DXI-1 andAt.ferrooxidans GF was approximately 1：5.

Bioleaching of chalcopyrite by pure and mixed culture

在饮料烧瓶的黄铜矿的 bioleaching 被使用纯 Acidithiobacillus ferrooxidans 调查并且混合了在中国在 Yushui 和 Dabaoshan 铜矿从酸矿排水孤立的文化，象 YS 和 DB 显著分别地。混合文化主要由 Acidithiobacillus ferrooxidans， Acidithiobacillus thiooxidans，和 Leptospirillum spp 组成了。(Leptospirillum ferriphilum 和 Leptospirillum ferrooxians ) 。结果证明因为断然从黄铜矿增加溶解率和铜的恢复的氧化硫的文化的存在，混合文化是比纯 Acidithiobacillus ferrooxidans 更有效的。有黄铜矿沥滤的减少的 pH 价值减少评价，因为象在 bioleaching 期间的矿物质表面上的钝化层的 jarosite 的形成。在用混合文化的 bioleaching，低 pH 从氧化禁止的硫被得到， jarosite 的形成。铜抽取在混合文化到达 46.27% 并且 30.37% 在在为 75 d 沥滤以后的纯 Acidithiobacillus ferrooxidans。

A new strain Acidithiobacillus albertensis BY-05 for bioleaching of metal sulfides ores

An acidophilic,rod-shaped Gram-negative sulfur oxidizing strain BY-05 was isolated from an acid mine drainage of copper ore in Baiyin area,Gansu Province,China.Ultrastructural studies show that the isolate has a tuft of polar flagella and possesses sulfur granules with clear membrane adhering to the cell innermembrane.Physiological study shows that this isolate grows autotrophically and aerobically by oxidizing S0and reduced inorganic sulfur compounds(SO, 2 23-SO, 2 24- S2 -and ZnS)with the optimum growth at pH 3.5-4.0 and at the temperature range of 25-30℃.The 16S rRNA gene sequence(DQ 423683)of strain BY-05 has 100%sequence similarity to that of Acidithiobacillus albertensis(DSM 14366).So it is identified and named as A. albertensis BY-05.Bioleaching experiments with this new strain show that it can play an important role in recovery of metals from chalcopyrite and sphalerite.

Comparative study on bioleaching of two different types of low-grade copper tailings by mixed moderate thermophiles

The bioleaching of two different types of low-grade copper tailings,acid-leaching tailings(ALT)and copper flotation tailings(CFT)by mixed moderate thermophiles,and the variation of mineralogical and microbiological characteristics during their dissolution processes were comparatively investigated.Results showed that bioleaching behaviors of the two types of tailings were significantly different.In ALT bioleaching,lower redox potential,higher[Fe3+]/[Fe2+]ratio and higher cell density in solution were obtained.These resulted in higher total copper,primary copper sulfide and secondary copper sulfide extractions,compared with CFT bioleaching.X-ray diffraction analysis suggested that gypsum and some metal organic complexes were detected in CFT bioleaching,which could cause the sluggish oxidation of sulphide minerals.The shifts of microbial community in the leachates and leaching residues varied greatly between ALT and CFT bioleaching.The percentage of iron-oxidizing bacteria in ALT bioleaching was higher than that of CFT,but the sulfur-oxidizing bacteria percentage was the opposite.The archaeon F.thermophilum L1 was detected in ALT but not in CFT.

Thin-layer heap bioleaching of copper flotation tailings containing high levels of fine grains and microbial community succession analysis

Thin-layer heap bioleaching of copper flotation tailings containing high levels of fine grains was carried out by mixed cultures on a small scale over a period of 210 d. Lump ores as a framework were loaded at the bottom of the ore heap. The overall copper leaching rates of tailings and lump ores were 57.10wt% and 65.52wt%, respectively. The dynamic shifts of microbial community structures about attached microorganisms were determined using the Illumina MiSeq sequencing platform based on 16S rRNA amplification strategy. The results indicated that chemolithotrophic genera Acidithiobacillus and Leptospirillum were always detected and dominated the microbial community in the initial and middle stages of the heap bioleaching process; both genera might be responsible for improving the copper extraction. However, Thermogymnomonas and Ferroplasma increased gradually in the final stage. Moreover, the effects of various physicochemical parameters and microbial community shifts on the leaching efficiency were further investigated and these associations provided some important clues for facilitating the effective application of bioleaching. © 2017, University of Science and Technology Beijing and Springer-Verlag Berlin Heidelberg.

Effect of Cu^(2+)ions on bioleaching of marmatite

铁闪锌矿的 bioleaching 上的 Cu2+ 离子的效果通过饮料沥滤被调查实验。接种的细菌是 Acidithiobacillus ferrooxidans， Acidithiobacillus thiooxidans 和 Lepthospirillum ferrooxidans 的一种混合文化。结果证明那锌有选择地被沥滤，并且 Cu2+ 离子的适当内容的增加在铁闪锌矿的 bioleaching 上有积极效果。沥滤的残余的 SEM 和 EDX 分析表明产品层在矿物质表面上铁硫化物，元素的硫和 jarosite 形式创作了。元素的硫的 biooxidation 被 Cu2+ 离子催化，它消除障碍到铁闪锌矿的 bioleaching 并且使 pH 价值低。与 0.5 个 g/L Cu2+ 离子的增加，最大的锌抽取率在 30 的温度在 23 d 以后到达 73%? 吗？？

Bioleaching of chalcopyrite by mixed culture of moderately thermophilic microorganisms

A mixed culture of moderately thermophilic microorganisms was enriched from acid mine drainages(AMDs)samples collected from several sulphide mines in China,and the bioleaching of chalcopyrite was conducted both in shake flask and bioreactor.The results show that in the shake flask,the mixture can tolerate 50 g/L chalcopyrite after being acclimated to gradually increased concentrations of chalcopyrite.The copper extraction increases obviously in bioleaching of chalcopyrite with moderately thermophilic microorganisms supplemented with 0.4 g/L yeast extract at 180 r/min,74% copper can be extracted in the pulp of 50 g/L chalcopyrite after 20 d.Compared with copper extractions of mesophilic culture,unacclimated culture and acclimated culture without addition of yeast extract,that of accliniated culture with addition of yeast extract is increased by 53%,44% and 16%,respectively.In a completely stirred tank reactor,the mass fraction of copper and total iron extraction reach up to 81% and 56%,respectively.The results also indicate that it is necessary to add a large amount of acid to the pulp to extract copper from chalcopyrite effectively.

Optimization of separation processing of copper and iron of dump bioleaching solution by Lix 984N in Dexing Copper Mine

The effects of the concentration of Lix 984N,phase ratio,initial pH value of aqueous phase and extraction time on the extraction of copper and iron under the condition of low Cu2+ /Fe3+ ratio in dump bioleaching solution of Dexing Copper Mine were explored.The optimal conditions of extraction are as follows: the concentration of Lix 984N 10%; the phase ratio (O/A) 1:1; the initial pH value of aqueous phase 1.5 and the mixing time 2 min.The stripping experiments show that H2SO4 solution could efficiently recover copper from the organic phase under the optimal conditions.

Acidophilic bacterial community reflecting pollution level of sulphide mine impacted by acid mine drainage

To reveal the impact of mining on bacterial ecology around mining area,bacterial community and geochemical characteristics about Dabaoshan Mine(Guangdong Province,China)were studied.By amplified ribosomal DNA restriction analysis and phylogenetic analysis,it is found that mining pollution greatly impacts the bacterial ecology and makes the habitat type of polluted environments close to acid mine drainage(AMD)ecology.The polluted environment is acidified so greatly that neutrophil and alkaliphilic microbes are massively dead and decomposed.It provided organic matters that can make Acidiphilium sp.rapidly grow and become the most bacterial species in this niche.Furthermore,Acidithiobacillus ferrooxidans and Leptospirillum sp.are also present in this niche.The amount of Leptospirillum sp.is far more than that of Acidithiobacillus ferrooxidans,which indicates that the concentration of toxic ions is very high.The conclusions of biogeochemical analysis and microbiological monitor are identical. Moreover,because the growth of Acidithiobacillus ferrooxidans and Leptospirillum sp.depends on ferrous iron or inorganic redox sulfur compounds which can be supplied by continual AMD,their presence indicates that AMD still flows into the site.And the area is closer to the outfalls of AMD,their biomasses would be more.So the distinction of their biomasses among different areas can help us to find the effluent route of AMD.

Growth and surface properties of new thermoacidophilic Archaea strain Acidianus manzaensis YN-25 grown on different substrates

新 thermoacidophilic Archaea 的生长和表面性质拉紧在 Tengchong 从一个酸温泉孤立的 Acidianus manzaensis YN-25，云南省，中国被调查在包括可溶的底层的不同底层上有教养铁的硫酸盐和 nonsoluble 固体底层 S0，黄铁矿和黄铜矿。在每底层的细胞的生长特征在细胞数字与变化被描绘， pH ，啊，并且Fe2+或 SO42 的集中?，或比率[Fe2+]到[Fe3+]，并且表面性质以希腊语的第六个字母潜力被描绘并且分析， hydrophobicity ，并且出现细胞的英尺红外系列。结果证明在稳固的底层上种的房间有等电位的点的更高的价值。他们是更恐水病的并且比铁的硫酸盐表示更多的表面蛋白质成年房间。

Comparative study on chalcopyrite bioleaching with assistance of different carbon materials by mixed moderate thermophiles

The catalysis of four carbon materials including artificial graphite(AG), carbon black(CB), activated carbon(AC) and carbon nanotube(CN) on chalcopyrite bioleaching by mixed moderate thermophiles was comparatively investigated. In AC and AG added bioleaching groups, low solution pH and suitable redox potential values, high total iron and ferric iron concentrations, and large number of adsorbed bacteria were obtained, resulting in high copper extractions. CB and CN inhibited the growth of bioleaching bacteria and led to the low bioleaching efficiency.X-ray diffraction analysis showed that jarosite and sulfur film were the main components of passivation layer with the addition of AG and AC,but did not hinder the dissolution of chalcopyrite. Microbial community structures of free and attached cells in AC and AG added groups changed dramatically compared with mixed moderate thermophiles. The sulfur-oxidizing bacteria of A. caldus S1 strain dominated the microbial community(93%-98%) at the end of bioleaching.The iron-oxidizing bacteria of L.ferriphilum YSK only accounted for low percentage(1%-2%).

Purification and enzymatic properties of arsenic resistance protein ArsH from heterogeneous expression in E.coli BL21

Four arsenic-resistance genes(arsB,arsC,arsH,arsR) have been discovered in Acidithiobacillus ferrooxidans.Their gene sequences have been identified and three different arsenic-resistance mechanisms have been elucidated.However,the function of the arsH gene in At.ferrooxidans remains unclear.In order to evaluate the function of the arsH gene,we cloned it and expressed it in Escherichia coli.The protein was purified and its relative molecular mass was determined by SDS-PAGE(Sodium dodecyl sulfate-polyacrylamide gel electrophoresis).The results indicated that the relative molecular mass of the purified ArsH was approximately 29 kDa.The purified protein ArsH from E.coli BL21 was a flavoprotein that oxidized in vitro NADPH with an optimal pH of 6.4.

Bacterial leaching of chalcopyrite and bornite with native bioleaching microorganism

A native mesophilic iron-oxidizing bacterium,Acidithiobacillus ferrooxidans,has been isolated(30℃)from a typical, lead-zinc concentrate of Dachang Mine in the region of Liuzhou located in the southwest of China.Two typical copper sulfide minerals,chalcopyrite and bomite,were from Meizhou Copper Mine in the region of Guangdong Province,China.Variation of pH and cell growth on time and effects of some factors such as temperature,inoculation cell number,and pulp density on the bioleaching of chalcopyrite and bomite were investigated.The results obtained from the bioleaching experiments indicate that the efficiency of copper extraction depends on all of the mentioned variables,especially the pulp density has more effect than the other factors on the microorganism.In addition,the results show that the maximum copper recovery was achieved using a mesophilic culture.The copper dissolution reached 51.34% for the chalcopyrite while it was 72.35% for the bornite at pH 2.0,initial Fe(II)concentration 9 g/L and pulp density 5%,after 30 d.

Mechanism of bioleaching chalcopyrite by Acidithiobacillus ferrooxidans in agar-simulated extracellular polymeric substances media

The mechanism of leaching chalcopyrite by Acidithiobacillus ferrooxidans （,4. ferrooxidans） in agar-simulated extracellular polymeric substances （EPS） media was investigated. The results indicate that bacterial EPS can release H＋ and concentrate Fe3＋; Fe2＋ is movable between agar-simulated EPS phase and bulk solution phase, but it is difficult for Fe3＋ to move due to its hydroxylation and EPS complex action; A. ferrooxidans first prefer Fe2＋ as energy to metabolize compared with chalcopyrite, and a suitable simulated EPS environment for bacterial living is at about pH 1.8; the iron precipitates and jarosites formed by a lot of biologically oxidized Fe3 cover the simulated EPS easily and form an impermeable deposit acting as a limited barrier of ion transport that attenuates the aggressiveness of the bioleaching attack. The EPS layer blocked by iron precipitates or jarosites is responsible for the chalcopyrite passivation.

Effect of pH values on the extracellular polysaccharide secreted by Acidithiobacillus ferrooxidans during chalcopyrite bioleaching

The pH value plays an important role in the bioleaching of sulphide minerals. The effect of pH values on the extracellular poly-saccharide secreted by Acidithiobacillus ferrooxidans was investigated in different phases of bacterial growth during chalcopyrite bioleach-ing. It is found that extracellular polysaccharide secretion from the cells attached to chalcopyrite is more efficiently than that of the free cells in the bioleaching solution. Three factors, pH values, the concentration of soluble metal ions, and the bacterial growth and metabolism, affect extracellular polysaccharide secretion in the free cells, and are related to the bacterial growth phase. Extracellular polysaccharide secretion from the attached cells is mainly dependent on the pH value of the bacterial culture.

Identification and fermentation optimization of protopectinase-overproducing strain Aspergillus niger CD-01 for pectin production

In order to solve the citrus peel resource waste problem protopectinase-overproducing strain CD-01 for pectin production and minimize the drawbacks of chemical extraction of pectin, a was isolated from a pit soil dumped with perished orange in Changde City, Hunan Province of China. The strain CD-01 had the same morphology and 28S rRNA gene sequence （FJ184995） as that of Aspergillus niger （ATCC 64028）. It was thus identified and named as Aspergillus niger CD-01. The fermentation condition was optimized based on L9（34） orthogonal experimental design and the variances analyses. The results show that the optimal condition for producing pectin is as follows： time 36 h, temperature 35 ℃, pH 5, and urea as the nitrogen source. Under this condition, the pectin yield can reach up to 24.5%. This shows a great potential of Aspergillus niger CD-01 in pectin extraction from citrus.

Application of modified sepiolite as reusable adsorbent for Pd(Ⅱ) sorption from acidic solutions

The adsorption characteristics and mechanisms of modified sepiolite as an adsorbent to recover Pd(Ⅱ) from acidic solutions were studied. The Pd(Ⅱ) adsorption properties were analyzed through isotherm, kinetic and thermodynamic models. In addition, SEM-EDS, TEM and XPS were applied to investigating the Pd(Ⅱ) adsorption mechanisms onto modified sepiolite. The equilibrium data were well fitted to Langmuir isotherm model with maximum Pd(Ⅱ) adsorption capacity of 322.58 mg/g at 30 ℃. The kinetic data could be satisfactorily simulated by the pseudosecond order model, indicating that the rate-controlling step was chemical adsorption. 99% of Pd(Ⅱ) could be recovered using 1 g/L modified sepiolite when initial concentration of Pd(Ⅱ) was 100 mg/L. The results of reusability studies indicated the modified sepiolite had an acceptable stability and reusability. This study indicated that the modified sepiolite might be an efficient and cost-effective material for Pd(Ⅱ) recovery.

Relatedness between catalytic effect of activated carbon and passivation phenomenon during chalcopyrite bioleaching by mixed thermophilic Archaea culture at 65°C

The relatedness between catalytic effect of activated carbon and passivation phenomenon during chalcopyrite bioleachingby mixed thermophilic Archaea culture(Acidianus brierleyi,Metallosphaera sedula,Acidianus manzaensis and Sulfolobusmetallicus)at65°C was studied.Leaching experiments showed that the addition of activated carbon could significantly promote thedissolution of chalcopyrite for both bioleaching and chemical leaching.The results of synchrotron-based X-ray diffraction,ironL-edge and sulfur K-edge X-ray absorption near edge structure spectroscopy indicated that activated carbon could change thetransition path of electrons through galvanic interactions to form more readily dissolved secondary mineral chalcocite at a low redoxpotential(?400mV)and then enhanced the copper dissolution.Jarosite accumulated immediately in the initial stage of bioleachingwith activated carbon but copper dissolution was not hindered.However,much jarosite precipitated on the surface of chalcopyrite inthe late stage of bioleaching,which might account for the decrease of copper dissolution rate.More elemental sulfur(S0)was alsodetected with additional activated carbon but the mixed thermophilic Archaea culture had a great sulfur oxidation activity,thus S0waseliminated and seemed to have no significant influence on the dissolution of chalcopyrite.

Isolation and identification of moderately thermophilic acidophilic iron-oxidizing bacterium and its bioleaching characterization

A moderately thermophilic acidophilic iron-oxidizing bacterium ZW-1 was isolated from Dexing mine, Jiangxi Province, China. The morphological, biochemical and physiological characteristics, 16S rRNA sequence and bioleaching characterization of strain ZW-1 were studied. The optimum growth temperature is 48 ℃, and the optimum initial pH is 1.9. The strain can grow autotrophically by using ferrous iron or elemental sulfur as sole energy sources. The strain is also able to grow heterotrophically by using peptone and yeast extract powder, but not glucose. The cell density of strain ZW-1 can reach up to 1.02×108 /mL with addition of 0.4 g/L peptone. A phylogenetic tree was constructed by comparing with the published 16S rRNA sequences of the relative bacteria species. In the phylogenetic tree, strain ZW-1 is closely relative to Sulfobacilus acidophilus with more than 99% sequence similarity. The results of bioleaching experiments indicate that the strain could oxidize Fe2+ efficiently, and the maximum oxidizing rate is 0.295 g/(L·h). It could tolerate high concentration of Fe3+ and Cu2+ (35 g/L and 25 g/L, respectively). After 20 d, 44.6% of copper is extracted from chalcopyrite by using strain ZW-1 as inocula.