Spatial and temporal analysis of beta diversity in the Barro Colorado Island forest dynamics plot, Panama

Background: Ecologists are interested in assessing the spatial and temporal variation in ecological surveys repeated over time. This paper compares the 1985 and 2015 surveys of the Barro Colorado Forest Dynamics plot(BCI), Panama,divided into 1250(20 m × 20 m) quadrats.Methods, spatial analysis: Total beta diversity was measured as the total variance of the Hellinger-transformed community data throughout the BCI plot. Total beta was partitioned into contributions of individual sites(LCBD indices), which were tested for significance and mapped.Results, spatial analysis: LCBD indices indicated the sites with exceptional community composition. In 1985,they were mostly found in the swamp habitat. In the 2015 survey, none of the swamp quadrats had significant LCBDs.What happened to the tree community in the interval?Methods, temporal analysis: The dissimilarity in community composition in each quadrat was measured between time 1(1985) and time 2(2015). Temporal Beta Indices(TBI) were computed from abundance and presence-absence data and tested for significance. TBI indices can be decomposed into B = species(or abundances-per-species) losses and C = species(or abundances-per-species) gains. B-C plots were produced; they display visually the relative importance of the loss and gain components, through time, across the sites.Results, temporal analysis: In BCI, quadrats with significant TBI indices were found in the swamp area, which is shrinking in importance due to changes to the local climate. A published habitat classification divided the BCI forest plot into six habitat zones. Graphs of the B and C components were produced for each habitat group. Group 4(the swamp) was dominated by species(and abundances-per-species) gains whereas the five other habitat groups were dominated by losses, some groups more than others.Conclusions: We identified the species that had changed the most in abundances in the swamp between T1 and T2.This analysis supported the hypothesis that the swamp is drying out and is invaded by species from the surrounding area. Analysis of the B and C components of temporal beta diversity bring us to the heart of the mechanisms of community change through time: losses(B) and gains(C) of species, losses and gains of individuals of various species. TBI analysis is especially interesting in species-rich communities where we cannot examine the changes in every species individually.

Botanic gardens should lead the way to create a "Garden Earth" in the Anthropocene

The strength and expertise that botanic gardens bring to conservation are based on their detailed knowledge and understanding of the care. management, and biology of a diversity of plant species. This emphasis on the organism has led to many ex-situ and in-situ conservation programs aimed at protecting endangered species, restoring threatened populations, and establishing living plant and seed collections of endangered species. In China, the scale and pace of change in land and resource use, often leading to environmental degradation, has created a strong emphasis on improving environmental conditions. If done properly, being "green" can be a surprisingly complex issue, because it should encompass and exploit the whole of plant diversity and function. Unfortunately, 'green' often includes a small portion of this whole. Earth's rich plant diversity presents considerable opportunity but requires expertise and knowledge for stable and beneficial management. With the dawning of the Anthropocene, we should strive to live on a "Garden Earth", where we design and manage our environments, both built and natural, to create a healthy, beneficial living landscape for people and other organisms. The staff of botanic gardens worldwide and the living collections they maintain embody the best examples of sustainable, beautiful, and beneficial environments that thrive on plant diversity. This expertise should be a fundamental resource for agencies in all sectors responsible for managing and designing "green" infrastructure. Botanic gardens should actively engage and contribute to these opportunities, from large public infrastructure projects to small private conservation efforts. Here, we discuss several ongoing conservation efforts, primarily in China, and attempt to identify areas where botanic gardens could make a significant and meaningful difference.

Trees of Panama: A complete checklist with every geographic range

Background Central America is one of the most diverse floristic provinces in the world,but comprehensive plant lists for the region are incomplete and need frequent updating.Full geographic ranges of individual species are seldom known.Our detailed forest inventory plots of Panama thus lack a global geographic perspective.In order to provide one,we assembled a thoroughly vetted checklist of all tree species of Panama,along with an estimate of each one’s range size based on published specimen records.Results 1)Panama has 3043 tree species in 141 families and 752 genera;57.6%were≥10 m tall and 16.9%were 3-5 m tall.2)The widest ranges were>1.5×107 km2,covering the entire neotropics and reaching>30∘latitude;12.4%of the species had ranges exceeding 107 km2.The median range was 6.9×105 km2.3)At the other extreme,16.2%of the species had a range<20,000 km2,a criterion suggesting endangered status.4)Range size increased with a tree species’height and varied significantly among families.5)Tree census plots,where we mapped and measured all individuals,captured 27.5%of the tree species,but a biased selection relative to range size;only 4.5%of the species in plots had ranges<20,000 km2.Conclusions Our checklist of the trees of Panama,based on rigorous criteria aimed at matching plot censuses,is 20%larger than previous.By recording species’maximum heights,we allow comparisons with other regions based on matching definitions,and the range sizes provide a quantitative basis for assessing extinction risk.Our next goal is to merge population density from plot censuses to add rigor to predictions of extinction risk of poorly-studied tropical tree species.

Distribution of Panama’s narrow-range trees:are there hot-spots?

Background:Tree species with narrow ranges are a conservation concern because heightened extinction risk accompanies their small populations.Assessing risks for these species is challenging,however,especially in tropical flora where their sparse populations seldom appear in traditional plots and inventories.Here,we utilize instead large scale databases that combine tree records from many sources to test whether the narrow-range tree species of Panama are concentrated at certain elevations or in certain provinces.Past investigations have suggested that the Choco region of eastern Panama and the high mountains of western Panama may be potential hotspots of narrow-range tree species.Methods:All individual records were collected from public databases,and the range size of each tree species found in Panama was estimated as a polygon enclosing all its locations.Species with ranges<20,000 km^(2) were defined as narrow endemics.We divided Panama into geographic regions and elevation zones and counted the number of individual records and the species richness in each,separating narrow-range species from all other species.Results:The proportion of narrow endemics peaked at elevations above 2000 m,reaching 17.2% of the species recorded.At elevation<1500 m across the country,the proportion was 6-11%,except in the dry Pacific region,where it was 1.5%.Wet forests of the Caribbean coast had 8.4% narrow-range species,slightly higher than other regions.The total number of narrow endemics,however,peaked at mid-elevation,not high elevation,because total species richness was highest at mid-elevation.Conclusions:High elevation forests of west Panama had higher proportions of narrow endemic trees than low-elevation regions,supporting their hot-spot status,while dry lowland forests had the lowest proportion.This supports the notion that montane forests of Central America should be a conservation focus.However,given generally higher diversity at low-to mid-elevation,lowlands are also important habitats for narrow-range tree species,though conservation efforts here may not protect narrow-range tree species as efficiently.

Expected adult lifespan in tropical trees: Long-term matrix demography in a large plot

Background: Documenting the entire lifetime of long-lived organisms requires splicing together short-term observations. Matrix demography provides a tool to calculate lifetime statistics, but large samples from juvenile to adult are needed, and few such studies have been done in tropical trees because high species diversity limits sample sizes. The 50-ha plot at Barro Colorado in Panama was designed to provide large samples, and with 30years of censuses, accurate population matrices can be constructed.Methods: In 31 abundant species, I divided all individuals≥1 cm dbh into 4 or 5 size class in each of seven censuses. Movements of stems between size classes over two censuses are termed transitions, and I constructed complete transition matrices for each species. From the matrices, I derived analytic solutions for lifetime demographic statistics. Expected adult lifespan from the sapling stage was the key statistic.Results: Expected adult lifespan from the sapling stage varied 100-fold over the 31 species, from 0.5 to 50 years,and maturation time varied from 19 to nearly 200 years. Species with the highest growth rates also had high death rates, and theoretical calculations of reproductive lifespan show that the fast-growing pioneer species have short expected adult lifespans relative to the average slow-growing, shade-tolerant species. Within the slowgrowth category, however, there was high variation in expected adult lifespan, and several shade-tolerant species under-performed the pioneers in terms of adult lifespan.Conclusions: Analytical solutions from population matrices allow theoretical analyses that integrate short-term growth records into lifespans of tropical trees. The analyses suggest that pioneer species must reproduce more successfully than shade-tolerant species to persist in the Barro Colorado forest. My next goal is to incorporate seed production and germination into lifetime matrix demography to test this hypothesis.

Climate change impacts the distribution of Quercus section Cyclobalanopsis(Fagaceae),a keystone lineage in East Asian evergreen broadleaved forests

East Asian evergreen broadleaved forests(EBFLs) harbor high species richness,but these ecosystems are severely impacted by global climate change and deforestation.Conserving and managing EBLFs requires understanding dominant tree distribution dynamics.In this study,we used 29 species in Quercus section Cyclobalanopsis-a keystone lineage in East Asian EBLFs-as proxies to predict EBLF distribution dynamics using species distribution models(SDMs).We examined climatic niche overlap,similarity,and equivalency among seven biogeographical regions’ species using’ecospat’.We also estimated the effectiveness of protected areas in the predicted range to elucidate priority conservation regions.Our results showed that the climatic niches of most geographical groups differ.The western species under the Indian summer monsoon regime were mainly impacted by temperature factors,whereas precipitation impacted the eastern species under the East Asian summer monsoon regime.Our simulation predicted a northward range expansion of section Cyclobalanopsis between 2081 and 2100,except for the ranges of the three Himalayan species analyzed,which might shrink significantly.The greatest shift of highly suitable areas was predicted for the species in the South Pacific,with a centroid shift of over 300 km.Remarkably,only 7.56% of suitable habitat is currently inside protected areas,and the percentage is predicted to continue declining in the future.To better conserve Asian EBLFs,establishing nature reserves in their northern distribution ranges,and transplanting the populations with predicted decreasing numbers and degraded habitats to their future highly suitable areas,should be high-priority objectives.