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新冠病毒蛋白酶与抗病毒药物分子相互作用的分子模拟研究 被引量:1
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作者 吴徐伟 李星宇 +3 位作者 李华 李振海 陈伟 李德昌 《应用数学和力学》 CSCD 北大核心 2021年第10期1081-1090,共10页
该工作通过研究抗病毒药物与新冠病毒蛋白酶(Mpro)的相互作用,理解药物分子对Mpro动力学的影响,对Mpro抑制剂的设计提供帮助.采用分子对接方法获得了Mpro与药物分子结合的复合物结构及其亲和力.常规的分子动力学模拟结果显示,测试的抗... 该工作通过研究抗病毒药物与新冠病毒蛋白酶(Mpro)的相互作用,理解药物分子对Mpro动力学的影响,对Mpro抑制剂的设计提供帮助.采用分子对接方法获得了Mpro与药物分子结合的复合物结构及其亲和力.常规的分子动力学模拟结果显示,测试的抗病毒药物均不能很好抑制Mpro结合位点处的动力学.通过副本交换的分子动力学模拟充分采样Mpro与不同药物分子结合的构象,分析不同药物分子对Mpro结合口袋形状及动力学产生的影响.结果显示不同药物分子通过与结合位点周围不同位置处氨基酸形成的不同的氢键网络,改变了Mpro结合口袋的形状.上述结果提示在未来的药物设计中,应充分考虑潜在抑制剂与Mpro结合口袋形成的氢键网络的重要性. 展开更多
关键词 新冠病毒蛋白酶 抗病毒药物分子 分子对接 分子动力学
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An atomistic model of silk protein network for studying the effect of pre-stretching on the mechanical performances of silks 被引量:1
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作者 Wenhui Shen Zihan Tang +7 位作者 Xuwei Wu Liang Pan Yuan Cheng Bo Huo Jizhou Song Weiqiu Chen Baohua Ji Dechang Li 《Acta Mechanica Sinica》 SCIE EI CAS CSCD 2022年第6期55-68,I0001,共15页
Silk protein builds one of the strongest natural fibers based on its complex nanocomposite structures.However,the mechanical performance of silk protein,related to its molecular structure and packing is still elusive.... Silk protein builds one of the strongest natural fibers based on its complex nanocomposite structures.However,the mechanical performance of silk protein,related to its molecular structure and packing is still elusive.In this study,we constructed an atomistic silk protein network model,which reproduces the extensive connection topology of silk protein with structure details of theβ-sheet crystallites and amorphous domains.With the silk protein network model,we investigated the structure evolution and stress distribution of silk protein under external loading.We found a pre-stretching treatment during the spinning process can improve the strength of silk protein.This treatment improves the properties of silk protein network,i.e.,increases the number of nodes and bridges,makes the nodes distributed homogeneously,and induces the bridges in the network well aligned to the loading direction,which is of great benefit to the mechanical performances of silk protein.Our study not only provides a realized atomistic model for silk protein network that well represents the structures and deformations of silk proteins under loading,but also gains deep insights into the mechanism how the pre-loading on silk proteins during spinning improves the mechanical properties of silk fibers. 展开更多
关键词 Silk protein Amorphous domain β-sheet crystallite Mechanical performances Molecular dynamics
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