针对稀疏快速傅里叶变换(Sparse Fast Fourier Transform,SFFT)并行码相位捕获算法抗噪性能较差的问题,提出了一种新的高抗噪性快速捕获算法。该算法依据伪码相关函数峰值唯一的特点,利用降采样快速傅里叶变换(Downsampling Fast Fourie...针对稀疏快速傅里叶变换(Sparse Fast Fourier Transform,SFFT)并行码相位捕获算法抗噪性能较差的问题,提出了一种新的高抗噪性快速捕获算法。该算法依据伪码相关函数峰值唯一的特点,利用降采样快速傅里叶变换(Downsampling Fast Fourier Transform,DFFT)取代了SFFT并行码相位捕获算法中对噪声容忍能力较差的定位循环与估值循环过程来对伪码相位进行捕获,同时对算法参数进行了优化设计。理论分析及仿真结果表明,与已有的SFFT快速捕获算法相比,SFFT-DT(Combination of SFFT and DFFT)捕获算法的计算速度提升了约19%,抗噪性能提升了约5 dB。与经典的FFT捕获算法相比,当两者抗噪性能近似相同(捕获概率大于95%的前提下)时,本文算法计算量比其减少了约43%。展开更多
Sparids are of considerable economic importance in marine fishery and aquaculture in China, and the species diversity of this group is considered relatively high. However, the accurate species identification and delim...Sparids are of considerable economic importance in marine fishery and aquaculture in China, and the species diversity of this group is considered relatively high. However, the accurate species identification and delimitation of sparids in China remain unaddressed. In this study, we used mitochondrial cytochrome oxidase subunit ?(COI) and 16S ribosomal RNA(16S) genes to conduct DNA barcoding and species delimitation in eleven sparid species from the coastal waters of China. Based on Kimura-2 parameter genetic distances, the mean intraspecific/interspecific variation for COI and 16S were calculated as 0.004/0.152 and 0.002/0.072, respectively. All the conspecific individuals formed monophyletic clusters in neighbour-joining trees of both markers. An obvious barcoding gap was detected for each species, and a common genetic threshold of 1.3% sequence divergence was defined for species delimitation in both markers. Although the sequence variation of 16S was generally lower than that of COI, the results indicated that sparid species could be ef fectively and accurately identified and delimited by COI as well as 16S. Thus, we propose that the COI gene serve as the standard DNA barcode for sparids, and that the 16S gene could also be an ideal candidate barcode. Moreover, each of the six sparid species( Argyrops spinifer, Rhabdosargus sarba, Dentex hypselosomus, Acanthopagrus latus, Acanthopagrus australis and Acanthopagrus berda) showed high intraspecific divergence(>1.3% genetic threshold) with the remarkable geographic lineages in the Indo-West Pacific oceans, which supported that potential unrecognized cryptic species were in them. The potential cryptic diversity revealed here might be primarily attributed to the allopatric divergences caused by the long-term geographic isolation between the Indian and West Pacific oceans or between the opposite sides of the Indian Ocean. The results further suggest that a revision of taxonomic status of these species is required, followed by development of a biodiversity conservation strategy.展开更多
文摘针对稀疏快速傅里叶变换(Sparse Fast Fourier Transform,SFFT)并行码相位捕获算法抗噪性能较差的问题,提出了一种新的高抗噪性快速捕获算法。该算法依据伪码相关函数峰值唯一的特点,利用降采样快速傅里叶变换(Downsampling Fast Fourier Transform,DFFT)取代了SFFT并行码相位捕获算法中对噪声容忍能力较差的定位循环与估值循环过程来对伪码相位进行捕获,同时对算法参数进行了优化设计。理论分析及仿真结果表明,与已有的SFFT快速捕获算法相比,SFFT-DT(Combination of SFFT and DFFT)捕获算法的计算速度提升了约19%,抗噪性能提升了约5 dB。与经典的FFT捕获算法相比,当两者抗噪性能近似相同(捕获概率大于95%的前提下)时,本文算法计算量比其减少了约43%。
基金Supported by the National Natural Science Foundation of China(Nos.31372532,41006084,41276166)the Project for Outstanding Young Teachers in Higher Education of Guangdong,China(No.Yq2013093)
文摘Sparids are of considerable economic importance in marine fishery and aquaculture in China, and the species diversity of this group is considered relatively high. However, the accurate species identification and delimitation of sparids in China remain unaddressed. In this study, we used mitochondrial cytochrome oxidase subunit ?(COI) and 16S ribosomal RNA(16S) genes to conduct DNA barcoding and species delimitation in eleven sparid species from the coastal waters of China. Based on Kimura-2 parameter genetic distances, the mean intraspecific/interspecific variation for COI and 16S were calculated as 0.004/0.152 and 0.002/0.072, respectively. All the conspecific individuals formed monophyletic clusters in neighbour-joining trees of both markers. An obvious barcoding gap was detected for each species, and a common genetic threshold of 1.3% sequence divergence was defined for species delimitation in both markers. Although the sequence variation of 16S was generally lower than that of COI, the results indicated that sparid species could be ef fectively and accurately identified and delimited by COI as well as 16S. Thus, we propose that the COI gene serve as the standard DNA barcode for sparids, and that the 16S gene could also be an ideal candidate barcode. Moreover, each of the six sparid species( Argyrops spinifer, Rhabdosargus sarba, Dentex hypselosomus, Acanthopagrus latus, Acanthopagrus australis and Acanthopagrus berda) showed high intraspecific divergence(>1.3% genetic threshold) with the remarkable geographic lineages in the Indo-West Pacific oceans, which supported that potential unrecognized cryptic species were in them. The potential cryptic diversity revealed here might be primarily attributed to the allopatric divergences caused by the long-term geographic isolation between the Indian and West Pacific oceans or between the opposite sides of the Indian Ocean. The results further suggest that a revision of taxonomic status of these species is required, followed by development of a biodiversity conservation strategy.
