期刊文献+
共找到2篇文章
< 1 >
每页显示 20 50 100
基于De Bruijn图的De Novo序列组装软件性能分析 被引量:1
1
作者 孟金涛 苑建蕊 +1 位作者 魏彦杰 冯圣中 《科研信息化技术与应用》 2013年第5期58-69,共12页
随着新一代测序技术的发展,一些新的全基因组组装算法应运而生,特别是针对第三代高通量测序仪产生的海量短序列的组装软件被不断开发出来,这些组装软件渐渐走向市场。但是,由于这些组装软件的适用性和其性能的差别,选择一款性能优良的... 随着新一代测序技术的发展,一些新的全基因组组装算法应运而生,特别是针对第三代高通量测序仪产生的海量短序列的组装软件被不断开发出来,这些组装软件渐渐走向市场。但是,由于这些组装软件的适用性和其性能的差别,选择一款性能优良的组装工具或者开发并行高吞吐的组装工具成为了当前面临的一大难题。本文选取基于De Bruijn图算法开发的4款De Novo组装的软件(Velvet、SOAPdenovo、IDBA、ABySS)对4种物种的基因组的模拟数据进行测试,并从软件的算法、组装性能和组装质量3个方面分析这4个软件的性能,同时根据其算法特点推断影响这些软件性能的关键因素,并给出软件的使用建议以及开发并行序列组装工具来组装超大规模的基因数据应该注意的问题。 展开更多
关键词 组装软件 DeBruijn图 DNA测序技术 性能分析 质量评测
原文传递
An Energy Efficient Clustering Scheme for Data Aggregation in Wireless Sensor Networks 被引量:1
2
作者 孟金涛 苑建蕊 +1 位作者 冯圣中 魏彦杰 《Journal of Computer Science & Technology》 SCIE EI CSCD 2013年第3期564-573,共10页
In wireless sensor networks, a clustering scheme is helpful in reducing the energy consumption by aggregating data at intermediate sensors. This paper discusses the important issue of energy optimization in hierarchic... In wireless sensor networks, a clustering scheme is helpful in reducing the energy consumption by aggregating data at intermediate sensors. This paper discusses the important issue of energy optimization in hierarchically-clustered wireless sensor networks to minimize the total energy consumption required to collect data. We propose a comprehensive energy consumption model for multi-tier clustered sensor networks, in which all the energy consumptions not only in the phase of data transmissions but also in the phase of cluster head rotations are taken into account. By using this new model, we are able to obtain the solutions of optimal tier number and the resulted optimal clustering scheme on how to group all the sensors into tiers by the suggested numerical method. This then enables us to propose an energy-efficiency optimized distributed multi-tier clustering algorithm for wireless sensor networks. This algorithm is theoretically analyzed in terms of time complexity. Simulation results are provided to show that, the theoretically calculated energy consumption by the new model matches very well with the simulation results, and the energy consumption is indeed minimized at the optimal number of tiers in the multi-tier clustered wireless sensor networks. 展开更多
关键词 wireless sensor network clustering scheme data aggregating energy efficiency
原文传递
上一页 1 下一页 到第
使用帮助 返回顶部