目的筛选出与流感病毒Non-structural protein 1(NS1)蛋白结合的人类宿主蛋白并加以分析,确定这些结合蛋白富集的方向及关键蛋白,为抗流感病毒的新药研发提供思路。方法将NS1样本、Biotin样本分别与HuProt^(TM)人类蛋白质组芯片进行杂...目的筛选出与流感病毒Non-structural protein 1(NS1)蛋白结合的人类宿主蛋白并加以分析,确定这些结合蛋白富集的方向及关键蛋白,为抗流感病毒的新药研发提供思路。方法将NS1样本、Biotin样本分别与HuProt^(TM)人类蛋白质组芯片进行杂交孵育,以两重复均满足Z-Score≥3为筛选条件对与NS1蛋白有结合的宿主蛋白进行筛选得到特异性检出蛋白,实验组(NS1蛋白)与对照组(Biotin)比值I Mean_Ratio≥1.4为条件筛选出显著特异性检出蛋白。用检出的195个蛋白进行GO(Biological Process,Molecular Function,Cellular Component)和KEGG_PATHWAY分析,通过蛋白-蛋白相互作用(PPI)及MCODE分析得到关键蛋白。结果获得显著特异性检出蛋白195个,GO分析结果显示这些蛋白主要参与了mRNA加工、RNA结合、蛋白结合,KEGG分析主要富集到RNA降解、氨基酸的生物合成等通路。得到的4个关键蛋白DDX6、HSPD1、PKLR、MTHFD1中DDX6与RNA的合成、翻译等过程相关,而NS1蛋白可以通过调控流感病毒RNA和宿主RNA促进病毒的感染,推测DDX6可能在该过程发挥作用;其他3个蛋白目前虽然没有明确的研究指明其与流感病毒有关系,但是能在其他RNA病毒的感染过程中发挥作用。结论与NS1结合的人类蛋白主要富集到RNA合成、加工、转录等过程中,MCODE分析得到的关键蛋白有潜力成为抗流感病毒新的靶点,但作用机制需要后续实验进行进一步验证。展开更多
Phage peptide libraries are collections of the specific length of short peptides,and they are based on phages as their carriers.They include mimotope libraries and peptide antibody libraries.Phage-displayed peptide li...Phage peptide libraries are collections of the specific length of short peptides,and they are based on phages as their carriers.They include mimotope libraries and peptide antibody libraries.Phage-displayed peptide libraries have been used to isolate specific ligands for numerous protein targets,and they have been proven useful in defining antigen momitopes,rapid determination of binding energetics at protein-protein interfaces,designing of vaccine and tumor research aspects.This review summarized the research progression of phage peptide library.展开更多
基金广州市科技局科研重点立项课题 (No .2 0 0 1-Z - 0 1- 2 ) 广东省科技厅研究团队项目课题 (No .0 15 0 12 )
文摘Phage peptide libraries are collections of the specific length of short peptides,and they are based on phages as their carriers.They include mimotope libraries and peptide antibody libraries.Phage-displayed peptide libraries have been used to isolate specific ligands for numerous protein targets,and they have been proven useful in defining antigen momitopes,rapid determination of binding energetics at protein-protein interfaces,designing of vaccine and tumor research aspects.This review summarized the research progression of phage peptide library.