A gap-free and haplotype-resolved lemon genome provides insights into flavor synthesis and huanglongbing (HLB) tolerance

The lemon(Citrus limon;family Rutaceae)is one of the most important and popular fruits worldwide.Lemon also tolerates huan-glongbing(HLB)disease,which is a devastating citrus disease.Here we produced a gap-free and haplotype-resolved chromosome-scale genome assembly of the lemon by combining Pacific Biosciences circular consensus sequencing,Oxford Nanopore 50-kb ultra-long,and high-throughput chromatin conformation capture technologies.The assembly contained nine-pair chromosomes with a contig N50 of 35.6 Mb and zero gaps,while a total of 633.0 Mb genomic sequences were generated.The origination analysis identified 338.5Mb genomic sequences originating from citron(53.5%),147.4Mb frommandarin(23.3%),and 147.1Mb frompummelo(23.2%).The genome included 30528 protein-coding genes,and most of the assembled sequences were found to be repetitive sequences.Several significantly expanded gene families were associated with plant-pathogen interactions,plant hormone signal transduction,and the biosynthesis of major active components,such as terpenoids and f lavor compounds.Most HLB-tolerant genes were expanded in the lemon genome,such as 2-oxoglutarate(2OG)/Fe(II)-dependent oxygenase and constitutive disease resistance 1,cell wall-related genes,and lignin synthesis genes.Comparative transcriptomic analysis showed that phloem regeneration and lower levels of phloem plugging are the elements that contribute to HLB tolerance in lemon.Our results provide insight into lemon genome evolution,active component biosynthesis,and genes associated with HLB tolerance.

Effect of copper ions implantation on the corrosion behavior of ZIRLO alloy in 1 mol/L H_2SO_4

In order to study the effect of copper ion implantation on the aqueous corrosion behavior of ZIRLO alloy, specimens were implanted with copper ions with fluences ranging from 1×10^16 to 1×10^ ions/cm^2, using a metal vapor vacuum arc source （MEVVA） at an extraction voltage of 40 kV, The valence states and depth distributions of elements in the surface layer of the samples were analyzed by X-ray photoelectron spectroscopy （XPS） and Auger electron spectroscopy （AES）, respectively. Glancing angle X-ray diffraction （GAXRD） was employed to examine the phase transformation due to the copper ion implantation. The potcntiodynamic polarization technique was used to evaluate the aqueous corrosion resistance of implanted ZIRLO alloy in a 1 mol/L H2SO4 solution. It was found that a significant improvement was achieved in the aqueous corrosion resistance of ZIRLO alloy implanted with copper ions when the fluence is 5×10^16 ions/cm^2. When the fluence is 1×10^16 or 1×10^17 ions/cm^2, the corrosion resistance of implanted sanaples was bad. Finally, the mechanism of the corrosion behavior of copper-implanted ZIRLO alloy was discussed.

Climatic effects on soil organic nitrogen fractions and amino acid chirality in paddy soils

Soil organic nitrogen(ON)accounts for more than 90%of the total nitrogen(TN)in paddy soils.Inadequate understanding of the different ON fractions in paddy soils and their corresponding bioavailability under different climatic conditions has constrained the development of appropriate nutrient management strategies for rice production.In this study,we applied a modified Bremner method coupled with high-performance liquid chromatography to characterize how soil ON fractions and amino acid chirality varied under different climatic conditions at five typical rice production sites along a latitudinal gradient.According to the results,climate had no obvious influence on TN,nitrogen(N)form,and individual amino acid contents.However,the proportions of various N forms in TN had linear relationships with annual mean temperature(AMT),with high correlation coefficient(r)values.Amino acid components also exhibited similar trends,with r as high as 0.85.Most notably,consistent linear relationships were observed between the D/L ratios of several amino acids and AMT in paddy soils(r=0.18–0.92).Findings of this study provide insights into ON and amino acid dynamics in paddy soil systems under intensive production along climate gradients.

Intergeneric chromosome-specific painting reveals differential chromosomal transmission from Tripidium arundinaceum in sugarcane progeny

Sugarcane has recently attracted increasing attention for its potential as a source of sugar and bioethanol,so increasing its yield is essential to ensure the sugar security and bioenergy production.Intergeneric hybridization is a highly efficient method to produce new genetic variants of crop plants,particularly those species with high ploidy such as sugarcane(Saccharum spp.).Tripidium arundinaceum exhibits many desirable agronomic traits,and has been widely studied to produce hybrids with improved stress tolerance and other characteristics in sugarcane breeding.However,the genetic relationship between T.arundinaceum and Saccharum species,and the individual T.arundinaceum chromosomal compositions in sugarcane hybrids are still elusive.Here we used whole-genome single-nucleotide polymorphisms(SNPs)to ascertain the phylogenetic relationships between these species and found that T.arundinaceum is more closely related to Saccharum than Sorghum,in contrast to the previous narrow genetic analyses using chloroplast DNA.Additionally,oligonucleotide(oligo)-based chromosome-specific painting derived from Saccharum officinarum was able to distinctly identify the chromosomes of T.arundinaceum.We developed the oligo-genomic in situ hybridization(GISH)system for the first time,to unveil the novel chromosome translocations and the transmission of individual T.arundinaceum chromosomes in sugarcane progeny.Notably,we discovered that the chromosomal transmission of T.arundinaceum exhibited several different inheritance modes,including n,2n,and over 2n in the BC1 progenies.Such inheritance patterns may have resulted from first division restitution(FDR)or FDR+nondisjunction of a chromosome with the sister chromatids in the second meiosis division/second division restitution(FDR+NSC/SDR)model during meiosis.These results will be of substantial benefit for the further selection of T.arundinaceum chromosomes for sugarcane genetic improvement.

北冰洋海洋酸化和碳循环的研究进展

海洋响应大气CO_2升高,引起海水pH和碳酸钙饱和度下降,这一过程称为海洋酸化.海洋酸化可能会对海洋生物和生态系统造成严重危害.在过去的20年中,全球气候变化引起北冰洋发生一系列快速变化,包括:海表温度上升、海冰快速后退、太平洋入流水增多、北冰洋和大气环流异常、淡水储量增加、初级生产力变异等.全球气候变化所诱发的北极快速变化预计将放大北冰洋海洋酸化,通过CO_2吸收和碳输送,北冰洋在响应气候变化较其他大洋更快速和显著.本文以北冰洋近岸碳吸收和碳封存研究,海盆区域表层海水p CO_2变异机理研究,20年来西北冰洋的酸化水体扩张现象为主线,综述了北冰洋快速融冰背景下的区域碳循环研究进展,并分析了其酸化水体增长与过去20年的环境和气候变化之间的联系.