Surface-enhanced Raman Spectroscopy(SERS)is a nondestructive technique for rapid detection of analytes even at the single-molecule level.However,highly sensitive and reliable SERS substrates are mostly fabricated with...Surface-enhanced Raman Spectroscopy(SERS)is a nondestructive technique for rapid detection of analytes even at the single-molecule level.However,highly sensitive and reliable SERS substrates are mostly fabricated with complex nanofabrication techniques,greatly restricting their practical applications.A convenient electrochemical method for transforming the surface of commercial gold wires/foils into silver-alloyed nanostructures is demonstrated in this report.Au substrates are treated with repetitive anodic and cathodic bias in an electrolyte of thiourea,in a one-pot one-step manner.X-rays absorption fine structure(XAFS)spectroscopy confirms that the AuAg alloy is induced at the surface.The unique AuAg alloyed surface nanostructures are particularly advantageous when served as SERS substrates,enabling a remarkably sensitive detection of Rhodamine B(a detection limit of 10^(-14)M,and uniform strong response throughout the substrates at 10^(-12)M).展开更多
A simple linear regression method is developed to retrieve daily averaged soil water content from diurnal variations of soil temperature measured at three or more depths. The method is applied to Oklahoma Mesonet soil...A simple linear regression method is developed to retrieve daily averaged soil water content from diurnal variations of soil temperature measured at three or more depths. The method is applied to Oklahoma Mesonet soil temperature data collected at the depths of 5, 10, and 30 cm during 11–20 June 1995. The retrieved bulk soil water contents are compared with direct measurements for one pair of nearly collocated Mesonet and ARM stations and also compared with the retrievals of a previous method at 14 enhanced Oklahoma Mesonet stations. The results show that the current method gives more persistent retrievals than the previous method. The method is also applied to Oklahoma Mesonet soil temperature data collected at the depths of 5, 25, 60, and 75 cm from the Norman site during 20–30 July 1998 and 1–31 July 2000. The retrieved soil water contents are verified by collocated soil water content measurements with rms differences smaller than the soil water observation error (0.05 m<SUP>3</SUP> m<SUP>−3</SUP>). The retrievals are found to be moderately sensitive to random errors (±0.1 K) in the soil temperature observations and errors in the soil type specifications.展开更多
Tumor-specific neoantigens have attracted much attention since they can be used as biomarkers to predict therapeutic effects of immune checkpoint blockade therapy and as potential targets for cancer immunotherapy. In ...Tumor-specific neoantigens have attracted much attention since they can be used as biomarkers to predict therapeutic effects of immune checkpoint blockade therapy and as potential targets for cancer immunotherapy. In this study, we developed a comprehensive tumor-specific neoantigen database (TSNAdb v1.0), based on pan-cancer immunogenomic analyses of somatic mutation data and human leukocyte antigen (HLA) allele information for 16 tumor types with 7748 tumor samples from The Cancer Genome Atlas (TCGA) and The Cancer Immunome Atlas (TCIA). We predicted binding affinities between mutant/wild-type peptides and HLA class I molecules by NetMHCpan v2.8/v4.0, and presented detailed information of 3,707,562/1,146,961 potential neoantigens generated by somatic mutations of all tumor samples. Moreover, we employed recurrent mutations in combination with highly frequent HLA alleles to predict potential shared neoantigens across tumor patients,which would facilitate the discovery of putative targets for neoantigen-based cancer immunotherapy.TSNAdb is freely available at http://biopharm.zju.edu.cn/tsnadb.展开更多
Mineral hydrogels have caught a lot of attention for their strong competency as artificial skin-like materials.Nonetheless,it remains a great difficulty in fulfilling in one hydrogel system a range of key functionalit...Mineral hydrogels have caught a lot of attention for their strong competency as artificial skin-like materials.Nonetheless,it remains a great difficulty in fulfilling in one hydrogel system a range of key functionalities that are needed for practical artificial skin applications,i.e.,to be biocompatible,strain-sensitive,ion-conductive,elastic and robust,anti-swelling,and anti-freezing.Here we present a such type of versatile hydrogel that is not only capable to deliver all the above-mentioned key functionalities but also highly stable.This novel hydrogel is constructed by introducing a gelatinous and amorphous multi-ionic biomineral(denoted as Mg-ACCP,containing Mg^(2+),Ca^(2+),CO_(3)^(2−),and PO_(4)^(3−))into the network of biocompatible polyvinyl alcohol(PVA)and sodium alginate(SA).The presence of Mg^(2+)and PO_(4)^(3−)in this hydrogel helps prohibit the crystallization of the biominerals,leading to significantly improved stability.The hydrogel thus obtained delivers excellent mechanical performance due to the chelation between the mineral ions and the organic matrix,and high sensitivity even to subtle pressure and strain applied,such as slight finger bending and gentle tapping.Furthermore,the novel hydrogel features high ionic conductivity,high resistance to swelling,and extraordinary anti-freezing property,holding great promise for applications in different practical scenarios,particularly in aqueous or cold environments.展开更多
Fabrication of single-crystalline metal-organic framework(MOF)hollow nanostructures with two-dimensional(2D)morphologies is a challenging task.Herein,twin-like MOF nanobricks,a quasi-hollow 2D architecture,with multi-...Fabrication of single-crystalline metal-organic framework(MOF)hollow nanostructures with two-dimensional(2D)morphologies is a challenging task.Herein,twin-like MOF nanobricks,a quasi-hollow 2D architecture,with multi-metal nodes and replaceable organic ligands,are uniformly and firmly grown on conductive Ni foam through a generic one-pot approach.The formation process of twin-like MOF nanobricks mainly includes selective epitaxial growth of Fe-rich MOF layer and simultaneously dissolution of the pre-formed Ni-rich metal-organic frameworks(MOFs),all of which can be ascribed to a special self-templated mechanism.The fantastic structural merits of twin-like MOF nanobrick arrays,featuring highly exposed active sites,remarkable electrical conductivity,and hierarchical porosities,enable this material for efficient electrocatalysis.Using bimetallic NiFe-MOFs grown on Ni foam as an example,the resultant twin-like nanobrick arrays can be directly utilized as three-dimensional(3D)integrated electrode for high-performance water oxidation in 1 M KOH with a low overpotential,fast reaction kinetics(28.5 mV·dec^(-1)),and superb stability.Interestingly,the unstable NiFe-MOFs were served as an oxygen evolution reaction(OER)pre-catalyst and the single-crystalline NiFe-MOF precursor can be in-situ topochemically regulated into porous and lowcrystalline NiFeOx nanosheets during the OER process.This work extends the hollowing strategy to fabricate hollow MOFs with 2D architectures and highlights their direct utilization for advanced electrocatalysis.展开更多
Crime risk prediction is helpful for urban safety and citizens’life quality.However,existing crime studies focused on coarse-grained prediction,and usually failed to capture the dynamics of urban crimes.The key chall...Crime risk prediction is helpful for urban safety and citizens’life quality.However,existing crime studies focused on coarse-grained prediction,and usually failed to capture the dynamics of urban crimes.The key challenge is data sparsity,since that 1)not all crimes have been recorded,and 2)crimes usually occur with low frequency.In this paper,we propose an effective framework to predict fine-grained and dynamic crime risks in each road using heterogeneous urban data.First,to address the issue of unreported crimes,we propose a cross-aggregation soft-impute(CASI)method to deal with possible unreported crimes.Then,we use a novel crime risk measurement to capture the crime dynamics from the perspective of influence propagation,taking into consideration of both time-varying and location-varying risk propagation.Based on the dynamically calculated crime risks,we design contextual features(i.e.,POI distributions,taxi mobility,demographic features)from various urban data sources,and propose a zero-inflated negative binomial regression(ZINBR)model to predict future crime risks in roads.The experiments using the real-world data from New York City show that our framework can accurately predict road crime risks,and outperform other baseline methods.展开更多
基金supported by Shenzhen-Hong Kong Science and Technology Innovation Cooperation Zone Shenzhen Park (Project HZQBKCZYB-2020030)National Key R&D Program of China (Project 2017YFA0204403)+2 种基金the National Natural Science Foundation of China (Project 51590892)the Major Program of Changsha Science and Technology (Project kh2003023)the Innovation and Technology Commission of HKSAR through Hong Kong Branch of National Precious Metals Material Engineering Research Centre,and the City University of Hong Kong (Project 9667207)。
文摘Surface-enhanced Raman Spectroscopy(SERS)is a nondestructive technique for rapid detection of analytes even at the single-molecule level.However,highly sensitive and reliable SERS substrates are mostly fabricated with complex nanofabrication techniques,greatly restricting their practical applications.A convenient electrochemical method for transforming the surface of commercial gold wires/foils into silver-alloyed nanostructures is demonstrated in this report.Au substrates are treated with repetitive anodic and cathodic bias in an electrolyte of thiourea,in a one-pot one-step manner.X-rays absorption fine structure(XAFS)spectroscopy confirms that the AuAg alloy is induced at the surface.The unique AuAg alloyed surface nanostructures are particularly advantageous when served as SERS substrates,enabling a remarkably sensitive detection of Rhodamine B(a detection limit of 10^(-14)M,and uniform strong response throughout the substrates at 10^(-12)M).
文摘A simple linear regression method is developed to retrieve daily averaged soil water content from diurnal variations of soil temperature measured at three or more depths. The method is applied to Oklahoma Mesonet soil temperature data collected at the depths of 5, 10, and 30 cm during 11–20 June 1995. The retrieved bulk soil water contents are compared with direct measurements for one pair of nearly collocated Mesonet and ARM stations and also compared with the retrievals of a previous method at 14 enhanced Oklahoma Mesonet stations. The results show that the current method gives more persistent retrievals than the previous method. The method is also applied to Oklahoma Mesonet soil temperature data collected at the depths of 5, 25, 60, and 75 cm from the Norman site during 20–30 July 1998 and 1–31 July 2000. The retrieved soil water contents are verified by collocated soil water content measurements with rms differences smaller than the soil water observation error (0.05 m<SUP>3</SUP> m<SUP>−3</SUP>). The retrievals are found to be moderately sensitive to random errors (±0.1 K) in the soil temperature observations and errors in the soil type specifications.
基金supported by the National Key Research and Development Program of China (Grant No. 2017YFC0908600)the National Natural Science Foundationof China (Grant No. 31501021)the Fundamental Research Funds for the Central Universities of China
文摘Tumor-specific neoantigens have attracted much attention since they can be used as biomarkers to predict therapeutic effects of immune checkpoint blockade therapy and as potential targets for cancer immunotherapy. In this study, we developed a comprehensive tumor-specific neoantigen database (TSNAdb v1.0), based on pan-cancer immunogenomic analyses of somatic mutation data and human leukocyte antigen (HLA) allele information for 16 tumor types with 7748 tumor samples from The Cancer Genome Atlas (TCGA) and The Cancer Immunome Atlas (TCIA). We predicted binding affinities between mutant/wild-type peptides and HLA class I molecules by NetMHCpan v2.8/v4.0, and presented detailed information of 3,707,562/1,146,961 potential neoantigens generated by somatic mutations of all tumor samples. Moreover, we employed recurrent mutations in combination with highly frequent HLA alleles to predict potential shared neoantigens across tumor patients,which would facilitate the discovery of putative targets for neoantigen-based cancer immunotherapy.TSNAdb is freely available at http://biopharm.zju.edu.cn/tsnadb.
基金supported by Shenzhen-Hong Kong Science and Technology Innovation Cooperation Zone Shenzhen Park Project:HZQB-KCZYB-2020030Health@InnoHK(Hong Kong Centre for Cerebro-cardiovascular Health Engineering(COCHE),Innovation and Technology Commission,the Government of the Hong Kong Special Administrative Region of the People’s Republic of China,the Innovation and Technology Commission of HKSAR through Hong Kong Branch of National Precious Metals Material Engineering Research Center(NPMM),the City University of Hong Kong(No.7005077).
文摘Mineral hydrogels have caught a lot of attention for their strong competency as artificial skin-like materials.Nonetheless,it remains a great difficulty in fulfilling in one hydrogel system a range of key functionalities that are needed for practical artificial skin applications,i.e.,to be biocompatible,strain-sensitive,ion-conductive,elastic and robust,anti-swelling,and anti-freezing.Here we present a such type of versatile hydrogel that is not only capable to deliver all the above-mentioned key functionalities but also highly stable.This novel hydrogel is constructed by introducing a gelatinous and amorphous multi-ionic biomineral(denoted as Mg-ACCP,containing Mg^(2+),Ca^(2+),CO_(3)^(2−),and PO_(4)^(3−))into the network of biocompatible polyvinyl alcohol(PVA)and sodium alginate(SA).The presence of Mg^(2+)and PO_(4)^(3−)in this hydrogel helps prohibit the crystallization of the biominerals,leading to significantly improved stability.The hydrogel thus obtained delivers excellent mechanical performance due to the chelation between the mineral ions and the organic matrix,and high sensitivity even to subtle pressure and strain applied,such as slight finger bending and gentle tapping.Furthermore,the novel hydrogel features high ionic conductivity,high resistance to swelling,and extraordinary anti-freezing property,holding great promise for applications in different practical scenarios,particularly in aqueous or cold environments.
基金This work was jointly supported by Shenzhen-Hong Kong Science and Technology Innovation Cooperation Zone Shenzhen Park Project(No.HZQB-KCZYB-2020030)the National Key R&D Program of China(Project No.2017YFA0204403)Innovation and Technology Commission of HKSAR through Hong Kong Branch of National Precious Metals Material Engineering Research Centre and Shenzhen Science and Technology Innovation Committee(No.JCYJ20200109113212238).
文摘Fabrication of single-crystalline metal-organic framework(MOF)hollow nanostructures with two-dimensional(2D)morphologies is a challenging task.Herein,twin-like MOF nanobricks,a quasi-hollow 2D architecture,with multi-metal nodes and replaceable organic ligands,are uniformly and firmly grown on conductive Ni foam through a generic one-pot approach.The formation process of twin-like MOF nanobricks mainly includes selective epitaxial growth of Fe-rich MOF layer and simultaneously dissolution of the pre-formed Ni-rich metal-organic frameworks(MOFs),all of which can be ascribed to a special self-templated mechanism.The fantastic structural merits of twin-like MOF nanobrick arrays,featuring highly exposed active sites,remarkable electrical conductivity,and hierarchical porosities,enable this material for efficient electrocatalysis.Using bimetallic NiFe-MOFs grown on Ni foam as an example,the resultant twin-like nanobrick arrays can be directly utilized as three-dimensional(3D)integrated electrode for high-performance water oxidation in 1 M KOH with a low overpotential,fast reaction kinetics(28.5 mV·dec^(-1)),and superb stability.Interestingly,the unstable NiFe-MOFs were served as an oxygen evolution reaction(OER)pre-catalyst and the single-crystalline NiFe-MOF precursor can be in-situ topochemically regulated into porous and lowcrystalline NiFeOx nanosheets during the OER process.This work extends the hollowing strategy to fabricate hollow MOFs with 2D architectures and highlights their direct utilization for advanced electrocatalysis.
基金This work was partly supported by the National Natural Science Foundation of China(Grant No.61772460)Ten Thousand Talent Program of Zhejiang Province(2018R52039).
文摘Crime risk prediction is helpful for urban safety and citizens’life quality.However,existing crime studies focused on coarse-grained prediction,and usually failed to capture the dynamics of urban crimes.The key challenge is data sparsity,since that 1)not all crimes have been recorded,and 2)crimes usually occur with low frequency.In this paper,we propose an effective framework to predict fine-grained and dynamic crime risks in each road using heterogeneous urban data.First,to address the issue of unreported crimes,we propose a cross-aggregation soft-impute(CASI)method to deal with possible unreported crimes.Then,we use a novel crime risk measurement to capture the crime dynamics from the perspective of influence propagation,taking into consideration of both time-varying and location-varying risk propagation.Based on the dynamically calculated crime risks,we design contextual features(i.e.,POI distributions,taxi mobility,demographic features)from various urban data sources,and propose a zero-inflated negative binomial regression(ZINBR)model to predict future crime risks in roads.The experiments using the real-world data from New York City show that our framework can accurately predict road crime risks,and outperform other baseline methods.