ydrogen embrittlement(HE)seriously restricts the service safety of structural metallic materials applicate in aerospace,ocean,and transportation.Recent studies aiming at increasing the HE-resistance have been focusing...ydrogen embrittlement(HE)seriously restricts the service safety of structural metallic materials applicate in aerospace,ocean,and transportation.Recent studies aiming at increasing the HE-resistance have been focusing on trapping diffusible H atoms by inherent microstructural features in materials.Alloying-induced compositional complexities,including different types of solute atoms,lattice chemical heterogeneities,and carbide precipitates,have attracted research efforts regarding the H trapping capabilities and potential to reduce the susceptibility to HE.In this paper,we review recent progress in exploiting compositional complexities to regulate the hydrogen trapping characteristics and mechanical properties in H-containing environments.The focus is placed on results and insights from ab initio calculations based on density functional theory(DFT).Quantitative predictions of trapping parameters and atomic scale details that are hardly to be gained through traditional experimental characterizations are provided.Additionally,we overview the electronic/atomistic mechanisms of H trapping energetics in metallic materials.Finally,we propose some key challenges and prospects in simulation of defect interactions,interpretation of experimental characterizations,and developing microstructure-based H diffusion prediction models.For the applications of first principle calculations,we illustrate how the DFT data can complement experimental characterizations to guide composition and microstructure design for better HE-resistant materials.展开更多
Targeted protein degradation(TPD)has rapidly emerged as a therapeutic modality to eliminate previously undruggable proteins by repurposing the cell’s endogenous protein degradation machinery.However,the susceptibilit...Targeted protein degradation(TPD)has rapidly emerged as a therapeutic modality to eliminate previously undruggable proteins by repurposing the cell’s endogenous protein degradation machinery.However,the susceptibility of proteins for targeting by TPD approaches,termed“degradability”,is largely unknown.Here,we developed a machine learning model,model-free analysis of protein degradability(MAPD),to predict degradability from features intrinsic to protein targets.MAPD shows accurate performance in predicting kinases that are degradable by TPD compounds[with an area under the precision–recall curve(AUPRC)of 0.759 and an area under the receiver operating characteristic curve(AUROC)of 0.775]and is likely generalizable to independent non-kinase proteins.We found five features with statistical significance to achieve optimal prediction,with ubiquitination potential being the most predictive.By structural modeling,we found that E2-accessible ubiquitination sites,but not lysine residues in general,are particularly associated with kinase degradability.Finally,we extended MAPD predictions to the entire proteome to find964 disease-causing proteins(including proteins encoded by 278 cancer genes)that may be tractable to TPD drug development.展开更多
Hydrogen embrittlement of steels is directly linked to hydrogen diffusion and trapping in the microstructure,which can hardly be precisely measured by modern experimental techniques.A phase-field model,in which a chem...Hydrogen embrittlement of steels is directly linked to hydrogen diffusion and trapping in the microstructure,which can hardly be precisely measured by modern experimental techniques.A phase-field model,in which a chemical potential well of hydrogen in the grain boundaries is introduced,is proposed to simulate hydrogen diffusion and trapping in the polycrystalline iron.It was interestingly found that grain boundaries,as connected trap sites,have a complex influence on the effective diffusivity of hydrogen,which are strongly linked to grain boundary diffusivity and binding energy.展开更多
基金Y.Mao acknowledges the support from the Yunnan Science and Technology Projects(Grant Nos.202002AB080001-6,202205AF150020 and 202203ZA080002)Z.B.Liu acknowledges the support from the National High-tech R&D Program(Grant No.YE20T60400B)K.Shen acknowledges the support from the National Natural Science Foundation of China(Grant No.11604306).
文摘ydrogen embrittlement(HE)seriously restricts the service safety of structural metallic materials applicate in aerospace,ocean,and transportation.Recent studies aiming at increasing the HE-resistance have been focusing on trapping diffusible H atoms by inherent microstructural features in materials.Alloying-induced compositional complexities,including different types of solute atoms,lattice chemical heterogeneities,and carbide precipitates,have attracted research efforts regarding the H trapping capabilities and potential to reduce the susceptibility to HE.In this paper,we review recent progress in exploiting compositional complexities to regulate the hydrogen trapping characteristics and mechanical properties in H-containing environments.The focus is placed on results and insights from ab initio calculations based on density functional theory(DFT).Quantitative predictions of trapping parameters and atomic scale details that are hardly to be gained through traditional experimental characterizations are provided.Additionally,we overview the electronic/atomistic mechanisms of H trapping energetics in metallic materials.Finally,we propose some key challenges and prospects in simulation of defect interactions,interpretation of experimental characterizations,and developing microstructure-based H diffusion prediction models.For the applications of first principle calculations,we illustrate how the DFT data can complement experimental characterizations to guide composition and microstructure design for better HE-resistant materials.
基金supported by grants from the Breast Cancer Research Foundation(Grant No.BCRF-19-100 to X.Shirley Liu)the Mark Foundation for Cancer Research(Mark Foundation Emerging Leader Award+5 种基金Grant No.19-001-ELA to Eric S.Fischer)the National Institutes of Health(NIHGrant Nos.R01CA218278 and R01CA214608 to Eric S.Fischer)Cancer Research Institute(Irvington Postdoctoral FellowshipGrant No.CRI 3442 to Shourya S.Roy Burman),USADamon Runyon Fellow supported by the Damon Runyon Cancer Research Foundation,USA(Grant No.DRQ-04-20)。
文摘Targeted protein degradation(TPD)has rapidly emerged as a therapeutic modality to eliminate previously undruggable proteins by repurposing the cell’s endogenous protein degradation machinery.However,the susceptibility of proteins for targeting by TPD approaches,termed“degradability”,is largely unknown.Here,we developed a machine learning model,model-free analysis of protein degradability(MAPD),to predict degradability from features intrinsic to protein targets.MAPD shows accurate performance in predicting kinases that are degradable by TPD compounds[with an area under the precision–recall curve(AUPRC)of 0.759 and an area under the receiver operating characteristic curve(AUROC)of 0.775]and is likely generalizable to independent non-kinase proteins.We found five features with statistical significance to achieve optimal prediction,with ubiquitination potential being the most predictive.By structural modeling,we found that E2-accessible ubiquitination sites,but not lysine residues in general,are particularly associated with kinase degradability.Finally,we extended MAPD predictions to the entire proteome to find964 disease-causing proteins(including proteins encoded by 278 cancer genes)that may be tractable to TPD drug development.
基金the National Key R&D program of China(No.2016YFB0300104)the financial support by the Beijing Natural Science Foundation(No.2182024)+1 种基金the National Natural Science Foundation of China(Grant Nos.51501099 and U1764252)the National Young 1000-Talents Program(No.D1101073)。
文摘Hydrogen embrittlement of steels is directly linked to hydrogen diffusion and trapping in the microstructure,which can hardly be precisely measured by modern experimental techniques.A phase-field model,in which a chemical potential well of hydrogen in the grain boundaries is introduced,is proposed to simulate hydrogen diffusion and trapping in the polycrystalline iron.It was interestingly found that grain boundaries,as connected trap sites,have a complex influence on the effective diffusivity of hydrogen,which are strongly linked to grain boundary diffusivity and binding energy.