Nitrogen-cycling microbial community functional potential and enzyme activities in cultured biofilms with response to inorganic nitrogen availability

Biofilms mediate crucial biochemical processes in aquatic ecosystems. It was hypothesized that eutrophication may promote the growth of biofilms, resulting in larger numbers of functional genes. However, the metabolic activity and the roles of biofilms in N cycling will be affected by ambient inorganic nitrogen availability, not by the abundance of functional genes. Biofilms were cultured either with replete inorganic nitrogen(N-rep) or without exogenous inorganic nitrogen supply(N-def) in a flow incubator, and the N-cycling gene abundances(nifH, N_2 fixation; amoA, ammonia oxidation, archaea and bacteria; nirS and nirK, denitrification) and enzyme activities(nitrogenase and nitrate reductase) were analyzed. The results showed that, comparing the N-def and N-rep biofilms, the former contained lower nifH gene abundance, but higher nitrogenase activity(NA), while the latter contained higher nifH gene abundance, but lower NA. Different patterns of NA diel variations corresponded to the dynamic microbial community composition and different stages of biofilm colonization. Ammonia oxidizing bacteria(AOB), detected only in N-def biofilms, were responsible for nitrification in biofilms. N-rep biofilms contained high nirS and nirK gene abundance and high denitrification enzyme activity, but N-def biofilms contained significantly lower denitrification gene abundance and activity. In general,the strong N_2 fixation in N-def biofilms and strong denitrification in N-rep biofilms assured the balance of aquatic ecosystems. The results suggested that evaluation of the functional processes of N cycling should not only focus on genetic potential, but also on the physiological activity of biofilms.

Influence of phosphorus availability on the community structure and physiology of cultured biofilms

Biofilms have important effects on nutrient cycling in aquatic ecosystems.However,publications about the community structure and functions under laboratory conditions are rare.This study focused on the developmental and physiological properties of cultured biofilms under various phosphorus concentrations performed in a closely controlled continuous flow incubator.The results showed that the biomass(Chl a)and photosynthesis of algae were inhibited under P-limitation conditions,while the phosphatase activity and P assimilation rate were promoted.The algal community structure of biofilms was more likely related to the colonization stage than with the phosphorus availability.Cyanobacteria were more competitive than other algae in biofilms,particularly when cultured under low P levels.A dominance shift occurred from non-filamentous algae in the early stage to filamentous algae in the mid and late stages under P concentrations of 0.01,0.1 and 0.6 mg/L.However,the total N content,dry weight biomass and bacterial community structure of biofilms were unaffected by phosphorus availability.This may be attributed to the low respiration rate,high accumulation of extracellular polymeric substances and high alkaline phosphatase activity in biofilms when phosphorus availability was low.The bacterial community structure differed over time,while there was little difference between the four treatments,which indicated that it was mainly affected by the colonization stage of the biofilms rather than the phosphorus availability.Altogether,these results suggested that the development of biofilms was influenced by the phosphorus availability and/or the colonization stage and hence determined the role that biofilms play in the overlying water.

The influence of desiccation on the recovery process of nitrogenase activity in restored biological soil crusts

Dear Editor,Biological soil crusts(BSCs),a layered structure formed by associations of soil organisms and topsoil,dominate arid and semiarid areas and serve important ecological functions in these areas(Eldridge and Greene,1994).Nitrogen fixation by BSCs is the main source of N in arid and semi-arid ecosystems.Desiccation is the most notable factor that influences BSCs,which recover physiological activity only after moistening.By influencing the amount of carbohydrates,