Disentangling the assembly mechanisms controlling community composition,structure,distribution,functions,and dynamics is a central issue in ecology.Although various approaches have been proposed to examine community a...Disentangling the assembly mechanisms controlling community composition,structure,distribution,functions,and dynamics is a central issue in ecology.Although various approaches have been proposed to examine community assembly mechanisms,quanti-tative characterization is challenging,particularly in microbial ecology.Here,we present a novel approach for quantitatively delineating community assembly mechanisms by combining the consumer–resource model with a neutral model in stochastic differential equations.Using time-series data from anaerobic bioreactors that target microbial 16S rRNA genes,we tested the applicability of three ecological models:the consumer–resource model,the neutral model,and the combined model.Our results revealed that model performances varied substantially as a function of population abundance and/or process conditions.The combined model performed best for abundant taxa in the treatment bioreactors where process conditions were manipulated.In contrast,the neutral model showed the best performance for rare taxa.Our analysis further indicated that immigration rates decreased with taxa abundance and com-petitions between taxa were strongly correlated with phylogeny,but within a certain phylogenetic distance only.The determinism underlying taxa and community dynamics were quantitatively assessed,showing greater determinism in the treatment bioreactors that aligned with the subsequent abnormal system functioning.Given its mechanistic basis,the framework developed here is expected to be potentially applicable beyond microbial ecology.展开更多
Higher biodiversity is often assumed to be a more desirable scenario for maintaining the functioning of ecosystems,but whether species-richer communities are also more disturbance-tolerant remains controversial.In thi...Higher biodiversity is often assumed to be a more desirable scenario for maintaining the functioning of ecosystems,but whether species-richer communities are also more disturbance-tolerant remains controversial.In this study,we investigated the bacterial communities based on 472 soil samples from 28 forests across China with associated edaphic and climatic properties.We developed two indexes(i.e.,community mean tolerance breadth[CMTB]and community mean response asynchrony[CMRA])to explore the relationship between diversity and community resistance potential.Moreover,we examined this resistance potential along the climatic and latitudinal gradients.We revealed that CMTB was significantly and negatively related to species richness,resulting from the changes in balance between relative abundances of putative specialists and generalists.In comparison,we found a unimodal relationship between CMRA and richness,suggesting that higher biodiversity might not always lead to higher community resistance.Moreover,our results showed differential local patterns along latitude.In particular,local patterns in the northern region mainly followed general relationships rather than those for the southern forests,which may be attributed to the differences in annual means and annual variations of climate conditions.Our findings highlight that the community resistance potential depends on the composition of diverse species with differential environmental tolerance and responses.This study provides a new,testable evaluation by considering tolerance breadth and response asynchrony at the community level,which will be helpful in assessing the influence of disturbance under rapid shifts in biodiversity and species composition as a result of global environmental change.展开更多
文摘Disentangling the assembly mechanisms controlling community composition,structure,distribution,functions,and dynamics is a central issue in ecology.Although various approaches have been proposed to examine community assembly mechanisms,quanti-tative characterization is challenging,particularly in microbial ecology.Here,we present a novel approach for quantitatively delineating community assembly mechanisms by combining the consumer–resource model with a neutral model in stochastic differential equations.Using time-series data from anaerobic bioreactors that target microbial 16S rRNA genes,we tested the applicability of three ecological models:the consumer–resource model,the neutral model,and the combined model.Our results revealed that model performances varied substantially as a function of population abundance and/or process conditions.The combined model performed best for abundant taxa in the treatment bioreactors where process conditions were manipulated.In contrast,the neutral model showed the best performance for rare taxa.Our analysis further indicated that immigration rates decreased with taxa abundance and com-petitions between taxa were strongly correlated with phylogeny,but within a certain phylogenetic distance only.The determinism underlying taxa and community dynamics were quantitatively assessed,showing greater determinism in the treatment bioreactors that aligned with the subsequent abnormal system functioning.Given its mechanistic basis,the framework developed here is expected to be potentially applicable beyond microbial ecology.
基金the National Natural Science Foundation of China(Nos.31600403,31800422,41673111,U1501232,41622106,31971553,and 31700470)the Natural Science Foundation of Guangdong Province,China(No.2016A030312003)+1 种基金the Natural Science Foundation of Guangxi Province,China(No.2017GXNSFBA198099)the U.S.National Science Foundation(NSF A22-0042).
文摘Higher biodiversity is often assumed to be a more desirable scenario for maintaining the functioning of ecosystems,but whether species-richer communities are also more disturbance-tolerant remains controversial.In this study,we investigated the bacterial communities based on 472 soil samples from 28 forests across China with associated edaphic and climatic properties.We developed two indexes(i.e.,community mean tolerance breadth[CMTB]and community mean response asynchrony[CMRA])to explore the relationship between diversity and community resistance potential.Moreover,we examined this resistance potential along the climatic and latitudinal gradients.We revealed that CMTB was significantly and negatively related to species richness,resulting from the changes in balance between relative abundances of putative specialists and generalists.In comparison,we found a unimodal relationship between CMRA and richness,suggesting that higher biodiversity might not always lead to higher community resistance.Moreover,our results showed differential local patterns along latitude.In particular,local patterns in the northern region mainly followed general relationships rather than those for the southern forests,which may be attributed to the differences in annual means and annual variations of climate conditions.Our findings highlight that the community resistance potential depends on the composition of diverse species with differential environmental tolerance and responses.This study provides a new,testable evaluation by considering tolerance breadth and response asynchrony at the community level,which will be helpful in assessing the influence of disturbance under rapid shifts in biodiversity and species composition as a result of global environmental change.