Rhododendron meddianum is a critically endangered species with important ornamental value and is also a plant species with extremely small populations.In this study,we used double digest restriction-siteassociated DNA...Rhododendron meddianum is a critically endangered species with important ornamental value and is also a plant species with extremely small populations.In this study,we used double digest restriction-siteassociated DNA sequencing(ddRAD)technology to assess the genetic diversity,genetic structure and demographic history of the three extant populations of R.meddianum.Analysis of SNPs indicated that R.meddianum populations have a high genetic diversity(p?0.0772±0.0024,HE?0.0742±0.002).Both FST values(0.1582e0.2388)and AMOVA showed a moderate genetic differentiation among the R.meddianum populations.Meanwhile,STRUCTURE,PCoA and NJ trees indicated that the R.meddianum samples were clustered into three distinct genetic groups.Using the stairway plot,we found that R.meddianum underwent a population bottleneck about 70,000 years ago.Furthermore,demographic models of R.meddianum and its relative,Rhododendron cyanocarpum,revealed that these species diverged about 3.05(2.21e5.03)million years ago.This divergence may have been caused by environmental changes that occurred after the late Pliocene,e.g.,the Asian winter monsoon intensified,leading to a drier climate.Based on these findings,we recommend that R.meddianum be conserved through in situ,ex situ approaches and that its seeds be collected for germplasm.展开更多
Rhododendron kuomeianum Y.H.Chang,J.Nielsen&Y.P.Ma,a new species of Rhododendron(Ericaceae)within subsect.Maddenia in sect.Rhododendron from Yiliang County,NE Yunnan,China,is described and illustrated.The new spec...Rhododendron kuomeianum Y.H.Chang,J.Nielsen&Y.P.Ma,a new species of Rhododendron(Ericaceae)within subsect.Maddenia in sect.Rhododendron from Yiliang County,NE Yunnan,China,is described and illustrated.The new species is similar to R.valentinianum,but it can be easily distinguished by its sparse scales on the abaxial surface of the leaf blade,fewer flowers per inflorescence and white corolla with pale red margins.There are also differences in the widths of calyx lobes,leaf blade shape and indumentum characteristics of the petiole between the new species and Rhododendron linearilobum.We confirmed that R.kuomeianum is a new species closely related to R.valentinianum and R.changii with phylogenomic studies of 10 species within this subsection based on restriction site-associated DNA sequencing(RADseq)data.These phylogenomic analyses also clarified additional taxonomic problems in this subsection previously raised by morphological analysis.Our findings make a strong case for using next-generation sequencing to explore phylogenetic relationships and identify new species,especially in plants groups with complicated taxonomic problems.展开更多
The genus Rhododendron is the largest genus of woody plants in China,having extremely important horticultural value(Chamberlain et al.,1996).However,efforts have only recently been made to assess the conservation stat...The genus Rhododendron is the largest genus of woody plants in China,having extremely important horticultural value(Chamberlain et al.,1996).However,efforts have only recently been made to assess the conservation status of the genus.According to conservation category assessments on the Red List of Rhododendrons(Gibbs et al.,2011)and the Threatened Species List of China's Higher Plants(Qin et al.,2017),32.03%and 17.13%of rhododendrons are evaluated to be threatened.展开更多
基金supported by the Fundamental Research Funds for the Central Non-profit Research Institution of the Chinese Academy of Forestry(Grant No.CAFYBB2019ZB007)the Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment,China(Grant No.2019HJ2096001006)+2 种基金the Ten Thousand Talent Program of Yunnan Province(Grant No.YNWRQNBJ-2019-010YNWR-QNBJ-2018-174)the Young and Middle-aged Academic and Technical Leader Reserve Talent Project of Yunnan Province(Grant No.2018HB066).
文摘Rhododendron meddianum is a critically endangered species with important ornamental value and is also a plant species with extremely small populations.In this study,we used double digest restriction-siteassociated DNA sequencing(ddRAD)technology to assess the genetic diversity,genetic structure and demographic history of the three extant populations of R.meddianum.Analysis of SNPs indicated that R.meddianum populations have a high genetic diversity(p?0.0772±0.0024,HE?0.0742±0.002).Both FST values(0.1582e0.2388)and AMOVA showed a moderate genetic differentiation among the R.meddianum populations.Meanwhile,STRUCTURE,PCoA and NJ trees indicated that the R.meddianum samples were clustered into three distinct genetic groups.Using the stairway plot,we found that R.meddianum underwent a population bottleneck about 70,000 years ago.Furthermore,demographic models of R.meddianum and its relative,Rhododendron cyanocarpum,revealed that these species diverged about 3.05(2.21e5.03)million years ago.This divergence may have been caused by environmental changes that occurred after the late Pliocene,e.g.,the Asian winter monsoon intensified,leading to a drier climate.Based on these findings,we recommend that R.meddianum be conserved through in situ,ex situ approaches and that its seeds be collected for germplasm.
基金the National Natural Science Foundation of China(Grant No.31770418 and No.31760231)the Youth Innovation Promotion Association,Chinese Academy of Sciences(Grant No.2018428)the Reserve Talents for Academic and Technical Leaders of Middle-aged and Young People in Yunnan Province(Grant No.2018HB066).
文摘Rhododendron kuomeianum Y.H.Chang,J.Nielsen&Y.P.Ma,a new species of Rhododendron(Ericaceae)within subsect.Maddenia in sect.Rhododendron from Yiliang County,NE Yunnan,China,is described and illustrated.The new species is similar to R.valentinianum,but it can be easily distinguished by its sparse scales on the abaxial surface of the leaf blade,fewer flowers per inflorescence and white corolla with pale red margins.There are also differences in the widths of calyx lobes,leaf blade shape and indumentum characteristics of the petiole between the new species and Rhododendron linearilobum.We confirmed that R.kuomeianum is a new species closely related to R.valentinianum and R.changii with phylogenomic studies of 10 species within this subsection based on restriction site-associated DNA sequencing(RADseq)data.These phylogenomic analyses also clarified additional taxonomic problems in this subsection previously raised by morphological analysis.Our findings make a strong case for using next-generation sequencing to explore phylogenetic relationships and identify new species,especially in plants groups with complicated taxonomic problems.
基金the Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment,China (2019HJ2096001006)CAS "Light of West China" Program (to Y.Ma)the Ten Thousand Talent Program of Yunnan Province (YNWR-QNBJ-2018-174).
文摘The genus Rhododendron is the largest genus of woody plants in China,having extremely important horticultural value(Chamberlain et al.,1996).However,efforts have only recently been made to assess the conservation status of the genus.According to conservation category assessments on the Red List of Rhododendrons(Gibbs et al.,2011)and the Threatened Species List of China's Higher Plants(Qin et al.,2017),32.03%and 17.13%of rhododendrons are evaluated to be threatened.