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基于基因组与蛋白组分析挖掘高效杀虫菌株Bt S2480-1毒蛋白基因 被引量:2
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作者 周燕 杨天宝 +4 位作者 潘甘霖 莫世栋 刘传顺 方宣钧 姜明国 《微生物学报》 CAS CSCD 北大核心 2022年第9期3587-3596,共10页
【目的】鉴定苏云金芽孢杆菌野生型菌株Bt S2480-1的杀虫活性并挖掘该菌株含有的杀虫基因资源。【方法】采用Illumina Hiseq2000测序平台对Bt S2480-1菌株进行全基因组测序,通过生物信息学方法获得该菌株的基因组信息、基因预测以及毒... 【目的】鉴定苏云金芽孢杆菌野生型菌株Bt S2480-1的杀虫活性并挖掘该菌株含有的杀虫基因资源。【方法】采用Illumina Hiseq2000测序平台对Bt S2480-1菌株进行全基因组测序,通过生物信息学方法获得该菌株的基因组信息、基因预测以及毒蛋白基因预测识别;随后,利用LTQ-Obitrap nano-LC-MS/MS系统对该菌株的总蛋白进行了质谱分析;最后以致倦库蚊幼虫和甜菜夜蛾幼虫为靶标昆虫对该菌株进行了生物活性测定。【结果】Bt S2480-1基因组大小为6.2 Mb,GC含量为35.11%,拼接得到1个拟核和3个大质粒的可视化草图,预测编码基因6297个,其中含有12个预测毒蛋白基因。BtS2480-1菌株总蛋白在LTQ-OrbitrapMS/MS质谱分析中共有1 500个蛋白质获得鉴定,鉴定获得11个毒蛋白。Bt S2480-1菌株总蛋白对致倦库蚊幼虫表现出非常高的杀蚊活性,而对甜菜夜蛾幼虫杀虫活性相对偏弱,其LC50分别为27.636μg/m L (95%FL:12.559-61.707μg/m L)和496.833μg/mg (95%FL:320.134–776.964μg/mg)。【结论】Bt S2480-1菌株基因组分析显示共含有12个预测毒蛋白基因,LTQ-Orbitrap MS/MS鉴定获得11个毒蛋白,Bt S2480-1菌株总蛋白对致倦库蚊和甜菜夜蛾幼虫都具有杀虫活性。 展开更多
关键词 苏云金芽孢杆菌 Bt S2480-1 毒蛋白 LTQ-Obitrap 杀虫活性
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Identifying and mapping cDNA fragments related to rice photoperiod sensitive genic male sterility 被引量:4
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作者 JIANG Shuye CHEN Qifeng fang xuanjun 《Chinese Science Bulletin》 SCIE EI CAS 2000年第6期536-540,共5页
The differentially expressed cDNA fragments have been obtained by differential screening with cDNA-RAPD technique in photoperiod sensitive genic male sterile (PGMS) rice. Some of them have been reassessed with Norther... The differentially expressed cDNA fragments have been obtained by differential screening with cDNA-RAPD technique in photoperiod sensitive genic male sterile (PGMS) rice. Some of them have been reassessed with Northern blot hybridization, from which a PGMS-related positive fragment, RPG43, has been identified. Further analysis on RPG43 with Southern blot and RAPD indicates that the fragment is a single-copy sequence and its mRNA has been processed after transcription. Sequence analysis reveals that RPG43 is 744 bp in length and contains a 60 bp region (from 126th to 185th bp) showing 72% homology to a human DNA sequence, pac pDJ-356d6, on chromosome 11. So it is a new sequence found in plant and its GenBank access number is AF126027. In addition, RPG43 has been mapped to a position 3.8 cM away from RFLP marker R1553 on chromosome 5 of rice. 展开更多
关键词 PHOTOPERIOD SENSITIVE GENIE male STERILITY RICE cDNA-RAPD sequence analysis CHROMOSOME location.
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