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基于加权共表达网络和机器学习筛选唾液腺腺样囊性癌疾病特征性基因
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作者 卜文超 陈世新 +4 位作者 江银华 曹明国 吴心茹 关云茜 谢思源 《上海口腔医学》 CAS 2024年第6期600-607,共8页
目的:确定唾液腺腺样囊性癌潜在的生物标志物,以进一步了解腺样囊性癌潜在的发病机制。方法:从NCBI GEO数据库下载2个微阵列数据集(GSE59701、GSE88804),用LIMMA软件包筛选SACC差异表达基因。WGCNA寻找与SACC最相关的重要模块基因,以LA... 目的:确定唾液腺腺样囊性癌潜在的生物标志物,以进一步了解腺样囊性癌潜在的发病机制。方法:从NCBI GEO数据库下载2个微阵列数据集(GSE59701、GSE88804),用LIMMA软件包筛选SACC差异表达基因。WGCNA寻找与SACC最相关的重要模块基因,以LASSO、SVM-RFE 2种机器学习算法识别hub基因。随后生成用于预测SACC的ROC曲线,判断诊断效果。采用R4.2.1软件进行统计学分析。结果:鉴定出3个hub基因(GABBR1、EN1和LINC01296),并用其建立一个预测性能较高的ROC曲线(AUC,1.000~1.000)。结论:采用WGCNA、LASSO和SVM-RFE获得3个枢纽基因(GABBR1、EN1和LINC01296)作为SACC的潜在生物标志物,为未来对SACC潜在关键基因的研究提供基础,为SACC的早期诊断和治疗提供依据。 展开更多
关键词 唾液腺腺样囊性癌 机器学习 加权分析 生物信息学
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帕金森病MPTP食蟹猴模型嗅球细胞凋亡 被引量:1
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作者 陈名宇 程炜 +4 位作者 闫莉莉 关云谦 吴迪 岳峰 任振华 《解剖学报》 CAS CSCD 北大核心 2019年第1期3-7,共5页
目的建立1-甲基-4-苯基-1,2,3,6-四氢吡啶(MPTP)帕金森病(PD)模型,探讨模型组嗅球细胞凋亡和胶质细胞增生情况。方法 3只成年健康食蟹猴,静脉注射MPTP建立PD模型,另3只静脉注射生理盐水作为对照。取出嗅球,免疫组织化学染色检测Caspase-... 目的建立1-甲基-4-苯基-1,2,3,6-四氢吡啶(MPTP)帕金森病(PD)模型,探讨模型组嗅球细胞凋亡和胶质细胞增生情况。方法 3只成年健康食蟹猴,静脉注射MPTP建立PD模型,另3只静脉注射生理盐水作为对照。取出嗅球,免疫组织化学染色检测Caspase-3、Bcl-2、离子钙接头蛋白分子1(Iba-1)和胶质纤维酸性蛋白(GFAP)在食蟹猴嗅球中的表达情况,采用Image J v1.8.0软件分析模型组和对照组之间的差异。结果 MPTP损伤后,与对照组相比,模型组嗅球突触小球层Caspase-3阳性细胞数明显增加,而Bcl-2表达减少;与对照组相比,模型组嗅球突触小球层和外网状层的GFAP和Iba-1阳性细胞数增加。结论 MPTP可诱导食蟹猴嗅球突触小球层细胞凋亡,并伴有星形胶质细胞增生和小胶质细胞激活,这可能与帕金森病的功能障碍有关。 展开更多
关键词 1-甲基-4-苯基-1 2 3 6-四氢吡啶 嗅球 免疫组织化学 食蟹猴
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Endothelial progenitor cell down-regulation in a mouse model of Kawasaki disease 被引量:11
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作者 LIU Jun-feng DU Zhong-dong +4 位作者 CHEN Zhi LU Dun-xiang LI Li guan yun-qian WAN Sui-gui 《Chinese Medical Journal》 SCIE CAS CSCD 2012年第3期496-501,共6页
Background Cardiovascular complications of Kawasaki disease (KD) are a common cause of heart disease in pediatric populations.Previous studies have suggested a role for endothelial progenitor cells (EPCs) in coron... Background Cardiovascular complications of Kawasaki disease (KD) are a common cause of heart disease in pediatric populations.Previous studies have suggested a role for endothelial progenitor cells (EPCs) in coronary artery lesions associated with KD.However,long-term observations of EPCs during the natural progression of this disorder are lacking.Using an experimental model of KD,we aimed to determine whether the coronary artery lesions are associated with down-regulation of EPCs.Methods To induce KD,C57BL/6 mice were administered an intraperitoneal injection of Lactobacillus casei cell wall extract (LCWE; phosphate buffered saline used as control vehicle).Study groups included:group A (14 days following LCWE injection),group B (56 days following LCWE injection) and group C (controls).Numbers of circulating EPCs (positively staining for both CD34 and FIk-1 while staining negative for CD45) were evaluated using flow cytometry.Bone marrow mononuclear cells were cultured in vitro to expand EPCs for functional analysis.In vitro EPC proliferation,adhesion and migration were assessed.Results The model was shown to exhibit similar coronary artery lesions to KD patients with coronary aneurysms.Numbers of circulating EPCs decreased significantly in the KD models (groups A and B) compared to controls ((0.017±0.008)% VS.(0.028±0.007)%,P〈0.05 and (0.016±0.007)% vs.(0.028±0.007)%,P 〈0.05).Proliferative,adhesive and migratory properties of EPCs were markedly impaired in groups A and B.Conclusion Coronary artery lesions in KD occur as a consequence of impaired vascular injury repair,resulting from excess consumption of EPCs together with a functional impairment of bone marrow EPCs and their precursors. 展开更多
关键词 Kawasaki disease endothelial progenitor cells coronary aneurysm mouse model
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Endothelial progenitor cell transplantation ameliorates elastin breakdown in a Kawasaki disease mouse model 被引量:10
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作者 CHEN Zhi DU Zhong-dong +4 位作者 LIU Jun-feng LU Dun-xiang LI Li guan yun-qian WAN Sui-gui 《Chinese Medical Journal》 SCIE CAS CSCD 2012年第13期2295-2301,共7页
Background Coronary artery damage from Kawasaki disease (KD) is closely linked to the dysfunction of endothelial progenitor cells (EPCs). The aim of the present study was to evaluate the therapeutic effect of EPCs... Background Coronary artery damage from Kawasaki disease (KD) is closely linked to the dysfunction of endothelial progenitor cells (EPCs). The aim of the present study was to evaluate the therapeutic effect of EPCs transplantation in KD model. Methods Lactobacillus casei cell wall extract (LCWE)-induced KD model in C57BL/6 mice was established. The model mice were injected intravenously with bone marrow-derived in vitro expanded EPCs. Histological evaluation, number of circulating EPCs and the function of bone marrow EPCs were examined at day 56. Results Inflammation was found around the coronary artery of the model mice after 14 days, Elastin breakdown was observed after 56 days. CM-Dil labeled EPCs incorporated into vessel repairing foci was found. At day 56, the number of peripheral EPCs in the KD model group was lower than in EPCs transplanted and control group. The functional index of bone marrow EPCs from the KD model group decreased in proliferation, adhesion and migration. Increased number of circulating EPCs and improved function were observed on the EPCs transplanted group compared with model group. Conclusion Exogenously administered EPCs, which represent a novel strategy could prevent the dysfunction of EPCs, accelerate the repair of coronary artery endothelium lesion and decrease the occurrence of aneurysm. 展开更多
关键词 Kawasaki disease endothelial progenitor cell TRANSPLANTATION mouse model
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Plasma RANTES level is correlated with cardio-cerebral atherosclerosis burden in patients with ischemic cerebrovascular disease 被引量:6
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作者 Kong Qi Ma Xin +3 位作者 Lyu Jun-Xuan Wang Chen Du Xiang-Ying guan yun-qian 《Chronic Diseases and Translational Medicine》 CSCD 2020年第1期46-54,共9页
Background::Regulated upon activation, normal T-cell expressed, and secreted (RANTES) is a chemokine actively involved in the initiation and progression of atherosclerosis (AS), which is the major cause of ischemic ce... Background::Regulated upon activation, normal T-cell expressed, and secreted (RANTES) is a chemokine actively involved in the initiation and progression of atherosclerosis (AS), which is the major cause of ischemic cerebrovascular disease (ICVD). This study aimed to determine the associations between circulating RANTES level and overall AS conditions of cardiac and cerebral vessel beds in patients with ICVD.Methods::Patients with ICVD admitted to the department of neurology of Xuanwu Hospital from April 1, 2019 to June 30, 2019 were prospectively enrolled in the study. Plasma RANTES level was measured by enzyme-linked immunosorbent assay to represent the circulating RANTES level. The integrated AS burden of the cervicocephalic and coronary arteries was examined using computed tomography angiography and reflected by "cardio-cerebral AS burden (CCAB)" as a continuous variable. Then, the relationship of plasma RANTES level and CCAB in patients with ICVD was analyzed by correlation analyses and general linear models.Results::A total of 40 patients with ICVD were included in the study. There was a significant positive correlation between CCAB and plasma RANTES level in ICVD ( r = 0.786, P < 0.001), independent of age, sex, acute or chronic phase of ICVD, and mono or dual antiplatelet therapy (adjusted B for ln RANTES, 12.063;95% confidence interval, 7.572-16.533). The association of plasma RANTES level with AS conditions (burden, severity, and extent) in single cardiac or cerebral vessel bed was similar to that with CCAB, but the correlation coefficient for CCAB was higher (increment ranged from 0.126 to 0.397). Conclusions::Plasma RANTES level was an independent indicator for the integrated AS burden of the cervicocephalic and coronary arteries in ICVD. Comprehensive evaluation of AS conditions using the novel continuous index CCAB might be important in revealing the systematic relationship between circulating RANTES and AS in patients with ICVD. 展开更多
关键词 PLASMA RANTES Cardiocerebral atherosclerosis BURDEN Ischemic CEREBROVASCULAR disease Cervicocephalic ARTERY Coronary ARTERY
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