The Chinese longsnout catfish(Leiocassis longirostris Günther)is one of the most economically important freshwater fish in China.As wild populations have declined sharply in recent years,it is also a valuable mod...The Chinese longsnout catfish(Leiocassis longirostris Günther)is one of the most economically important freshwater fish in China.As wild populations have declined sharply in recent years,it is also a valuable model for research on sexual dimorphism,comparative biology,and conservation.However,the current lack of high-quality chromosome-level genome information for the species hinders the advancement of comparative genomic analysis and evolutionary studies.Therefore,we constructed the first high-quality chromosomelevel reference genome for L.longirostris.The total genome was 703.19 Mb,with 389 contigs and contig N50 length of 4.29 Mb.Using high-throughput chromosome conformation capture(Hi-C)data,the genome sequences(685.53 Mb)were scaffolded into 26 chromosomes ranging from 17.36 to 43.97 Mb,resulting in a chromosomal anchoring rate for the genome of 97.44%.In total,23708 protein-coding genes were identified in the genome.Phylogenetic analysis indicated that L.longirostris and its closest related species P.fulvidraco diverged approximately 26.6 million years ago.This highquality reference genome of L.longirostris should pave the way for future genomic comparisons and evolutionary research.展开更多
基金supported by the China Agriculture Research System(CARS-46)Fundamental Research Funds for the Central Universities(XDJK2017B008,XDJK2017C035,XDJK2019C025,5360300098)+1 种基金Natural Science Foundation of Chongqing(cstc2020jcyj-msxmX0438)National Natural Science Foundation of China(32071651)。
文摘The Chinese longsnout catfish(Leiocassis longirostris Günther)is one of the most economically important freshwater fish in China.As wild populations have declined sharply in recent years,it is also a valuable model for research on sexual dimorphism,comparative biology,and conservation.However,the current lack of high-quality chromosome-level genome information for the species hinders the advancement of comparative genomic analysis and evolutionary studies.Therefore,we constructed the first high-quality chromosomelevel reference genome for L.longirostris.The total genome was 703.19 Mb,with 389 contigs and contig N50 length of 4.29 Mb.Using high-throughput chromosome conformation capture(Hi-C)data,the genome sequences(685.53 Mb)were scaffolded into 26 chromosomes ranging from 17.36 to 43.97 Mb,resulting in a chromosomal anchoring rate for the genome of 97.44%.In total,23708 protein-coding genes were identified in the genome.Phylogenetic analysis indicated that L.longirostris and its closest related species P.fulvidraco diverged approximately 26.6 million years ago.This highquality reference genome of L.longirostris should pave the way for future genomic comparisons and evolutionary research.
