Carrot(Daucus carota)is an Apiaceae plant with multi-colored fleshy roots that provides a model system for carotenoid research.In this study,we assembled a 430.40 Mb high-quality gapless genome to the telomere-to-telo...Carrot(Daucus carota)is an Apiaceae plant with multi-colored fleshy roots that provides a model system for carotenoid research.In this study,we assembled a 430.40 Mb high-quality gapless genome to the telomere-to-telomere(T2T)level of“Kurodagosun”carrot.In total,36268 genes were identified and 34961 of them were functionally annotated.The proportion of repeat sequences in the genome was 55.3%,mainly long terminal repeats.Depending on the coverage of the repeats,14 telomeres and 9 centromeric regions on the chromosomes were predicted.A phylogenetic analysis showed that carrots evolved early in the family Apiaceae.Based on the T2T genome,we reconstructed the carotenoid metabolic pathway and identified the structural genes that regulate carotenoid biosynthesis.Among the 65 genes that were screened,9 were newly identified.Additionally,some gene sequences overlapped with transposons,suggesting replication and functional differentiation of carotenoid-related genes during carrot evolution.Given that some gene copies were barely expressed during development,they might be functionally redundant.Comparison of 24 cytochrome P450 genes associated with carotenoid biosynthesis revealed the tandem or proximal duplication resulting in expansion of CYP gene family.These results provided molecular information for carrot carotenoid accumulation and contributed to a new genetic resource.展开更多
Celery(Apium graveolens L.)is a vegetable crop in the Apiaceae family that is widely cultivated and consumed because it contains necessary nutrients and multiple biologically active ingredients,such as apigenin and te...Celery(Apium graveolens L.)is a vegetable crop in the Apiaceae family that is widely cultivated and consumed because it contains necessary nutrients and multiple biologically active ingredients,such as apigenin and terpenoids.Here,we report the genome sequence of celery based on the use of HiSeq 2000 sequencing technology to obtain 600.8 Gb of data,achieving~189-fold genome coverage,from 68 sequencing libraries with different insert sizes ranging from 180 bp to 10 kb in length.The assembled genome has a total sequence length of 2.21 Gb and consists of 34,277 predicted genes.Repetitive DNA sequences represent 68.88%of the genome sequences,and LTR retrotransposons are the main components of the repetitive sequences.Evolutionary analysis showed that a recent whole-genome duplication event may have occurred in celery,which could have contributed to its large genome size.The genome sequence of celery allowed us to identify agronomically important genes involved in disease resistance,flavonoid biosynthesis,terpenoid metabolism,and other important cellular processes.The comparative analysis of apigenin biosynthesis genes among species might explain the high apigenin content of celery.The whole-genome sequences of celery have been deposited at CeleryDB(http://apiaceae.njau.edu.cn/celerydb).The availability of the celery genome data advances our knowledge of the genetic evolution of celery and will contribute to further biological research and breeding in celery as well as other Apiaceae plants.展开更多
Carrots(Daucus carota L.),among the most important root vegetables in the Apiaceae family,are cultivated worldwide.The storage root is widely utilized due to its richness in carotenoids,anthocyanins,dietary fiber,vita...Carrots(Daucus carota L.),among the most important root vegetables in the Apiaceae family,are cultivated worldwide.The storage root is widely utilized due to its richness in carotenoids,anthocyanins,dietary fiber,vitamins and other nutrients.Carrot extracts,which serve as sources of antioxidants,have important functions in preventing many diseases.The biosynthesis,metabolism,and medicinal properties of carotenoids in carrots have been widely studied.Research on hormone regulation in the growth and development of carrots has also been widely performed.Recently,with the development of high-throughput sequencing technology,many efficient tools have been adopted in carrot research.A large amount of sequence data has been produced and applied to improve carrot breeding.A genome editing system based on CRISPR/Cas9 was also constructed for carrot research.In this review,we will briefly summarize the origins,genetic breeding,resistance breeding,genome editing,omics research,hormone regulation,and nutritional composition of carrots.Perspectives about future research work on carrots are also briefly provided.展开更多
Gibberellins(GAs)are considered potentially important regulators of cell elongation and expansion in plants.Carrot undergoes significant alteration in organ size during its growth and development.However,the molecular...Gibberellins(GAs)are considered potentially important regulators of cell elongation and expansion in plants.Carrot undergoes significant alteration in organ size during its growth and development.However,the molecular mechanisms underlying gibberellin accumulation and perception during carrot growth and development remain unclear.In this study,five stages of carrot growth and development were investigated using morphological and anatomical structural techniques.Gibberellin levels in leaf,petiole,and taproot tissues were also investigated for all five stages.Gibberellin levels in the roots initially increased and then decreased,but these levels were lower than those in the petioles and leaves.Genes involved in gibberellin biosynthesis and signaling were identified from the carrotDB,and their expression was analyzed.All of the genes were evidently responsive to carrot growth and development,and some of them showed tissue-specific expression.The results suggested that gibberellin level may play a vital role in carrot elongation and expansion.The relative transcription levels of gibberellin pathway-related genes may be the main cause of the different bioactive GAs levels,thus exerting influences on gibberellin perception and signals.Carrot growth and development may be regulated by modification of the genes involved in gibberellin biosynthesis,catabolism,and perception.展开更多
Celery is rich in nutrients and cultivated worldwide.Anthocyanins are natural plant pigments with high antioxidant capabilities in the human diet.The accumulation of anthocyanins in celery results in the purple skin c...Celery is rich in nutrients and cultivated worldwide.Anthocyanins are natural plant pigments with high antioxidant capabilities in the human diet.The accumulation of anthocyanins in celery results in the purple skin color of petioles.Here,an R2R3-MYB transcription factor(TFs),AgMYB1,was cloned from purple-skin celery.Phylogenetic analysis revealed that AgMYB1 belongs to the anthocyanin branch.Sequence alignment showed that AgMYB1 contains multiple anthocyanin-related motifs.Consistent with the activating role in anthocyanin production,AgMYB1 showed higher transcriptions in purple celery compared with non-purple celery.Transient expression of AgMYB1 in tobacco leaves promoted the accumulation of anthocyanins and produced red pigments in leaves.Heterologous expression of AgMYB1 in Arabidopsis activates anthocyanin production and generates dark-purple plants.The enhancement of anthocyanin biosynthetic genes transcripts and glycosylation capacities in transgenic Arabidopsis verified the activating roles of AgMYB1 at the gene and protein level,respectively.The antioxidant capacity of transgenic Arabidopsis was also increased compared to wild type Arabidopsis.Additionally,yeast two-hybrid assay proved that AgMYB1 interacted with bHLH TFs to regulate anthocyanin biosynthesis.Our results show that the overexpression of single R2R3-MYB gene,AgMYB1,without coexpression of other TFs,can improve anthocyanin production and antioxidant capacity in transgenic plants.This study presents new information for anthocyanin regulatory mechanisms in purple celery and provides a strategy for cultivating plants with high levels of anthocyanins.展开更多
The magnetostructural coupling between magnetic and structure transitions plays an important role in the multifunctional applications of magentocaloric materials. In this work, ferromagnetism and magnetostructural tra...The magnetostructural coupling between magnetic and structure transitions plays an important role in the multifunctional applications of magentocaloric materials. In this work, ferromagnetism and magnetostructural transformation are achieved in nonmagnetic V-doped MnNiGe alloys. With simultaneously reducing the transformation temperature and converting antiferromagnetic martensite to ferromagnetic state, the magnetostructural transformation between ferromagnetic orthorhombic phase and paramagnetic hexagonal phase is established in a temperature region as large as 130 K. The magnetic-field-induced magnetostructural transformation is accompanied by considerable magnetocaloric effect.展开更多
基金This article was supported by National Natural Science Foundation of China(32072563,32102369)Natural Science Foundation of Jiangsu Province(BK20211366)+2 种基金Project of Guizhou Provincial Department of Science and Technology(Qiankehe Fuqi[2022005])Project of Guiyang of Science and Technology Bureau(Zhuke contract[2021]5-1)Priority Academic Program Development of Jiangsu Higher Education Institutions Project(PAPD).
文摘Carrot(Daucus carota)is an Apiaceae plant with multi-colored fleshy roots that provides a model system for carotenoid research.In this study,we assembled a 430.40 Mb high-quality gapless genome to the telomere-to-telomere(T2T)level of“Kurodagosun”carrot.In total,36268 genes were identified and 34961 of them were functionally annotated.The proportion of repeat sequences in the genome was 55.3%,mainly long terminal repeats.Depending on the coverage of the repeats,14 telomeres and 9 centromeric regions on the chromosomes were predicted.A phylogenetic analysis showed that carrots evolved early in the family Apiaceae.Based on the T2T genome,we reconstructed the carotenoid metabolic pathway and identified the structural genes that regulate carotenoid biosynthesis.Among the 65 genes that were screened,9 were newly identified.Additionally,some gene sequences overlapped with transposons,suggesting replication and functional differentiation of carotenoid-related genes during carrot evolution.Given that some gene copies were barely expressed during development,they might be functionally redundant.Comparison of 24 cytochrome P450 genes associated with carotenoid biosynthesis revealed the tandem or proximal duplication resulting in expansion of CYP gene family.These results provided molecular information for carrot carotenoid accumulation and contributed to a new genetic resource.
基金supported by the Jiangsu Agriculture Science and Technology Innovation Fund(CX(18)2007)New Century Excellent Talents in University(NCET-11-0670)National Natural Science Foundation of China。
文摘Celery(Apium graveolens L.)is a vegetable crop in the Apiaceae family that is widely cultivated and consumed because it contains necessary nutrients and multiple biologically active ingredients,such as apigenin and terpenoids.Here,we report the genome sequence of celery based on the use of HiSeq 2000 sequencing technology to obtain 600.8 Gb of data,achieving~189-fold genome coverage,from 68 sequencing libraries with different insert sizes ranging from 180 bp to 10 kb in length.The assembled genome has a total sequence length of 2.21 Gb and consists of 34,277 predicted genes.Repetitive DNA sequences represent 68.88%of the genome sequences,and LTR retrotransposons are the main components of the repetitive sequences.Evolutionary analysis showed that a recent whole-genome duplication event may have occurred in celery,which could have contributed to its large genome size.The genome sequence of celery allowed us to identify agronomically important genes involved in disease resistance,flavonoid biosynthesis,terpenoid metabolism,and other important cellular processes.The comparative analysis of apigenin biosynthesis genes among species might explain the high apigenin content of celery.The whole-genome sequences of celery have been deposited at CeleryDB(http://apiaceae.njau.edu.cn/celerydb).The availability of the celery genome data advances our knowledge of the genetic evolution of celery and will contribute to further biological research and breeding in celery as well as other Apiaceae plants.
基金supported by the National Natural Science Foundation of China(31872098)Natural Science Foundation of Jiangsu Province https://doi.org/10.1038/s41438-019-0150-6 supported by the National Natural Science Foundation of China(31872098)+1 种基金Natural Science Foundation of Jiangsu Province(BK20170460)the Priority Academic Program Development of Jiangsu Higher Education Institutions(PAPD).
文摘Carrots(Daucus carota L.),among the most important root vegetables in the Apiaceae family,are cultivated worldwide.The storage root is widely utilized due to its richness in carotenoids,anthocyanins,dietary fiber,vitamins and other nutrients.Carrot extracts,which serve as sources of antioxidants,have important functions in preventing many diseases.The biosynthesis,metabolism,and medicinal properties of carotenoids in carrots have been widely studied.Research on hormone regulation in the growth and development of carrots has also been widely performed.Recently,with the development of high-throughput sequencing technology,many efficient tools have been adopted in carrot research.A large amount of sequence data has been produced and applied to improve carrot breeding.A genome editing system based on CRISPR/Cas9 was also constructed for carrot research.In this review,we will briefly summarize the origins,genetic breeding,resistance breeding,genome editing,omics research,hormone regulation,and nutritional composition of carrots.Perspectives about future research work on carrots are also briefly provided.
基金The research was supported by the following:New Century Excellent Talents in University(NCET-11-0670)Jiangsu Natural Science Foundation(BK20130027)+1 种基金the Open Project of State Key Laboratory of Crop Genetics and Germplasm Enhancement(ZW2014007)the Priority Academic Program Development of Jiangsu Higher Education Institutions.
文摘Gibberellins(GAs)are considered potentially important regulators of cell elongation and expansion in plants.Carrot undergoes significant alteration in organ size during its growth and development.However,the molecular mechanisms underlying gibberellin accumulation and perception during carrot growth and development remain unclear.In this study,five stages of carrot growth and development were investigated using morphological and anatomical structural techniques.Gibberellin levels in leaf,petiole,and taproot tissues were also investigated for all five stages.Gibberellin levels in the roots initially increased and then decreased,but these levels were lower than those in the petioles and leaves.Genes involved in gibberellin biosynthesis and signaling were identified from the carrotDB,and their expression was analyzed.All of the genes were evidently responsive to carrot growth and development,and some of them showed tissue-specific expression.The results suggested that gibberellin level may play a vital role in carrot elongation and expansion.The relative transcription levels of gibberellin pathway-related genes may be the main cause of the different bioactive GAs levels,thus exerting influences on gibberellin perception and signals.Carrot growth and development may be regulated by modification of the genes involved in gibberellin biosynthesis,catabolism,and perception.
基金supported by the Jiangsu Agricultural Science and Technology Innovation Fund [CX (2018) 2007],Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD)Postgraduate Research&Practice Innovation Program of Jiangsu Province (KYCX18_0692).
文摘Celery is rich in nutrients and cultivated worldwide.Anthocyanins are natural plant pigments with high antioxidant capabilities in the human diet.The accumulation of anthocyanins in celery results in the purple skin color of petioles.Here,an R2R3-MYB transcription factor(TFs),AgMYB1,was cloned from purple-skin celery.Phylogenetic analysis revealed that AgMYB1 belongs to the anthocyanin branch.Sequence alignment showed that AgMYB1 contains multiple anthocyanin-related motifs.Consistent with the activating role in anthocyanin production,AgMYB1 showed higher transcriptions in purple celery compared with non-purple celery.Transient expression of AgMYB1 in tobacco leaves promoted the accumulation of anthocyanins and produced red pigments in leaves.Heterologous expression of AgMYB1 in Arabidopsis activates anthocyanin production and generates dark-purple plants.The enhancement of anthocyanin biosynthetic genes transcripts and glycosylation capacities in transgenic Arabidopsis verified the activating roles of AgMYB1 at the gene and protein level,respectively.The antioxidant capacity of transgenic Arabidopsis was also increased compared to wild type Arabidopsis.Additionally,yeast two-hybrid assay proved that AgMYB1 interacted with bHLH TFs to regulate anthocyanin biosynthesis.Our results show that the overexpression of single R2R3-MYB gene,AgMYB1,without coexpression of other TFs,can improve anthocyanin production and antioxidant capacity in transgenic plants.This study presents new information for anthocyanin regulatory mechanisms in purple celery and provides a strategy for cultivating plants with high levels of anthocyanins.
基金Project supported by the Key Research&Development Program of Jiangsu Province,China(Grant No.BE2017102)
文摘The magnetostructural coupling between magnetic and structure transitions plays an important role in the multifunctional applications of magentocaloric materials. In this work, ferromagnetism and magnetostructural transformation are achieved in nonmagnetic V-doped MnNiGe alloys. With simultaneously reducing the transformation temperature and converting antiferromagnetic martensite to ferromagnetic state, the magnetostructural transformation between ferromagnetic orthorhombic phase and paramagnetic hexagonal phase is established in a temperature region as large as 130 K. The magnetic-field-induced magnetostructural transformation is accompanied by considerable magnetocaloric effect.