Ophiopholis mirabilis is a common species with a high population density on the western coasts of the northern Pacifi c Ocean.The number of O.mirabilis has been increasing recently in the scallop aquaculture zone(the ...Ophiopholis mirabilis is a common species with a high population density on the western coasts of the northern Pacifi c Ocean.The number of O.mirabilis has been increasing recently in the scallop aquaculture zone(the Zhangzi Island area,northern Yellow Sea)in China.To explore the mechanism of its population variation,the reproductive cycle of O.mirabilis was investigated in this area(39°04′N;122°51′E)from February 2017 through January 2018 and determined by the monthly gonad index(GI),histological examinations of the gonads and the oocyte size-frequency distribution.O.mirabilis had a clear annual reproductive cycle that was synchronous between males and females.Sea temperature and food availability played important roles in O.mirabilis reproduction.The GI value was less reliable for determining reproductive activity in O.mirabilis because the nutritive tissues within the gonads may be utilized to synthesize gametes,leading to a decrease in GI during maturation.The histological results also show that abundant nutritive phagocytes were present in the gonads of O.mirabilis,which,together with the germ cells,aff ected the weight of the gonads.In addition,the mature oocytes of O.mirabilis were relatively small(75–150μm),indicating that the larval development was planktotrophic.This study provided insights into the reproductive patterns and biology of O.mirabilis and is an essential basis for the quantity control of this species in aquaculture areas.展开更多
Background : SHARPIN (SHANK- associated RH domain interactor) is a component ofthe linear ubiquitination complex that regulates the NF- κB signaling pathway. To betterunderstand the function of SHARPIN, we sought to ...Background : SHARPIN (SHANK- associated RH domain interactor) is a component ofthe linear ubiquitination complex that regulates the NF- κB signaling pathway. To betterunderstand the function of SHARPIN, we sought to establish a novel geneticallyengineered Syrian hamster with SHARPIN disruption using the CRISPR/Cas9 system.Methods : A single- guide ribonucleic acid targeting exon 1 of SHARPIN gene was designedand constructed. The zygotes generated by cytoplasmic injection of the Cas9/gRNA ribonucleoprotein were transferred into pseudopregnant hamsters. Neonatalmutants were identified by genotyping. SHARPIN protein expression was detectedusing Western blotting assay. Splenic, mesenteric lymph nodes (MLNs), and thymicweights were measured, and organ coefficients were calculated. Histopathologicalexamination of the spleen, liver, lung, small intestine, and esophagus was performedindependently by a pathologist. The expression of lymphocytic markers and cytokineswas evaluated using reverse transcriptase- quantitative polymerase chain reaction.Results : All the offspring harbored germline- transmitted SHARPIN mutations.Compared with wild- type hamsters, SHARPIN protein was undetectable in SHARPIN −/−hamsters. Spleen enlargement and splenic coefficient elevation were spotted inSHARPIN −/− hamsters, with the descent of MLNs and thymuses. Further, eosinophilinfiltration and structural alteration in spleens, livers, lungs, small intestines, and esophagiwere obvious after the deletion of SHARPIN. Notably, the expression of CD94 and CD22 was downregulated in the spleens of knockout (KO) animals. Nonetheless,the expression of CCR3, CCL11, Il4 , and Il13 was upregulated in the esophagi. Theexpression of NF- κB and phosphorylation of NF- κB and IκB protein significantly diminishedin SHARPIN −/− animals.Conclusions : A novel SHARPIN KO hamster was successfully established using theCRISPR/Cas9 system. Abnormal development of secondary lymphoid organs andeosinophil infiltration in multiple organs reveal its potential in delineating SHARPINfunction and chronic inflammation.展开更多
Calanus sinicus is a calanoid copepod widely distributed in coastal waters of China and Japan, and oversummering strategies may have major impacts on their population dynamics which in turn affect local marine food we...Calanus sinicus is a calanoid copepod widely distributed in coastal waters of China and Japan, and oversummering strategies may have major impacts on their population dynamics which in turn affect local marine food web structure. The abundance, stage composition, and sex composition of the planktonic copepod C. sinicus were studied from August to October 2002 in the southern Yellow Sea to understand how its population recovers from the over-summering state. Results showed that C. sinicus had low reproduction in August due to high temperature, except in waters near the Cheju Island with rich food and moderate bottom temperature, but the reproduction rates here decreased in September–October as food availability declined. When temperature dropped in September–October, C. sinicus actively propagated in coastal shallow waters. However, reproduction rates of C. sinicus individuals inhabiting the Yellow Sea Cold Water Mass(YSCWM) remained low during the three months of the study. The percentage of C. sinicus females was high during the reproductive period, which suggests that the sex composition of adult C. sinicus may reflect whether or not the population is in the reproductive mode.Numerous fifth copepodite stage(CV) C. sinicus aggregated in the YSCWM in a suspended developmental stage during the three months of this study, and they potentially served as the parental individuals for population development when conditions became optimal for reproduction later in the year.展开更多
Planktonic Oikopleura dioica respond almost instantly to opportunistic algal blooms,but it is unknown whether the population increase can change from an exponential to a logistic model to avoid a final sudden collapse...Planktonic Oikopleura dioica respond almost instantly to opportunistic algal blooms,but it is unknown whether the population increase can change from an exponential to a logistic model to avoid a final sudden collapse.To test the hypothesis that intraspecific competition regulates the intrinsic rate of natural increase(r),density-dependent effects on growth and reproduction performance were investigated in O.dioica via laboratory incubations.Over a large food concentration range,batch maturation was observed above the per capita food supply(PFS)of 8.1µgC/ind.in 4.5 d.Somatic growth was saturated beyond this PFS value,whereas gonad length increased continuously.Below this threshold,individuals reached small body and gonad lengths,and maturation was rarely observed during the incubation period.The gonad/body volume and maturation ratios also increased with the PFS.Instead of the food concentration,the r values were regulated by competition pressure via variability in maturation duration and the proportion of mature individuals in the cohorts.When the minimum food demand was satisfied in the designated generation time,the r value tended to be regulated by the spawning proportion in the population.Otherwise,prolonged development duration and decreased r values were expected.展开更多
Herbivore digestion in aquatic ecosystems is usually considered a method of nutrient repackaging rather than recycling,as recalcitrant and low-level nutrients are presumed for their egesta.We hypothesize that this opi...Herbivore digestion in aquatic ecosystems is usually considered a method of nutrient repackaging rather than recycling,as recalcitrant and low-level nutrients are presumed for their egesta.We hypothesize that this opinion holds only for nutrients recycled by excretion and egestion,not for those elements recycled overwhelmingly by fecal decomposition.In this study,we compared the dissolution of biogenic silica(BSi),phosphorus(P)and iron(Fe)between two food items and fecal pellets of two marine invertebrates fed on artificial seawaters free of bacteria.Relative to raw food materials,the mass proportion in fecal pellets of BSi increased,while that of P and Fe decreased.During the 21 days of incubation,the total dissolution rate of BSi was 13.9–36.0 times higher in fecal pellets than food items,followed by P(1.5–4.2 times)and Fe(1.1–2.4 times).While the dissolution of BSi and Fe occurred mostly in the first few days,P was mostly released in the last ten days.Regarding BSi dissolution,a higher rate was observed in oyster Crassostrea gigas than the Echiuran Urechis unicinctus,but no significant difference was found between fecal pellets in either species under naturally available diatom food(Phaeodactylum tricornutum)and introduced terrestrial food(rice husk powder),respectively.Our results show direct evidence of digestion-associated nutrients mobilization.BSi dissolution after animal digestion may be similarly efficient to that caused by bacteria colonization in natural seawater.展开更多
For the analysis of spinal and disc diseases,automated tissue segmentation of the lumbar spine is vital.Due to the continuous and concentrated location of the target,the abundance of edge features,and individual diffe...For the analysis of spinal and disc diseases,automated tissue segmentation of the lumbar spine is vital.Due to the continuous and concentrated location of the target,the abundance of edge features,and individual differences,conventional automatic segmentation methods perform poorly.Since the success of deep learning in the segmentation of medical images has been shown in the past few years,it has been applied to this task in a number of ways.The multi-scale and multi-modal features of lumbar tissues,however,are rarely explored by methodologies of deep learning.Because of the inadequacies in medical images availability,it is crucial to effectively fuse various modes of data collection for model training to alleviate the problem of insufficient samples.In this paper,we propose a novel multi-modality hierarchical fusion network(MHFN)for improving lumbar spine segmentation by learning robust feature representations from multi-modality magnetic resonance images.An adaptive group fusion module(AGFM)is introduced in this paper to fuse features from various modes to extract cross-modality features that could be valuable.Furthermore,to combine features from low to high levels of cross-modality,we design a hierarchical fusion structure based on AGFM.Compared to the other feature fusion methods,AGFM is more effective based on experimental results on multi-modality MR images of the lumbar spine.To further enhance segmentation accuracy,we compare our network with baseline fusion structures.Compared to the baseline fusion structures(input-level:76.27%,layer-level:78.10%,decision-level:79.14%),our network was able to segment fractured vertebrae more accurately(85.05%).展开更多
Tiacumicin B(also known as fidaxomicin or difimicin)is a marketed 18-membered macrolide antibiotic for the treatment of Clostridium difficile infections.Tiacumicin B is structurally characterized with two chlorine ato...Tiacumicin B(also known as fidaxomicin or difimicin)is a marketed 18-membered macrolide antibiotic for the treatment of Clostridium difficile infections.Tiacumicin B is structurally characterized with two chlorine atoms substituted on the aromatic ring,which is installed by the halogenase Tia M.During the study on halide compatibility of Tia M,a facile and nonenzymatic iodination method of didechlorotiacumicin B was discovered,requiring Na I,acid and air for iodination at room temperature.This method was also amenable to other 9 aromatic substrates with electron-rich sites for iodination.展开更多
基金Supported by the Strategic Priority Research Program of the Chinese Academy of Sciences(Nos.XDA23050501,XDA19060201)the Key Program for International S&T Cooperation Projects:Sino-Australian Center for Healthy Coasts(No.2016YFE0101500)+1 种基金the Shandong Joint Fund for Marine Ecology and Environmental Sciences(No.U1606404)the Taishan Scholars Project to SUN Song。
文摘Ophiopholis mirabilis is a common species with a high population density on the western coasts of the northern Pacifi c Ocean.The number of O.mirabilis has been increasing recently in the scallop aquaculture zone(the Zhangzi Island area,northern Yellow Sea)in China.To explore the mechanism of its population variation,the reproductive cycle of O.mirabilis was investigated in this area(39°04′N;122°51′E)from February 2017 through January 2018 and determined by the monthly gonad index(GI),histological examinations of the gonads and the oocyte size-frequency distribution.O.mirabilis had a clear annual reproductive cycle that was synchronous between males and females.Sea temperature and food availability played important roles in O.mirabilis reproduction.The GI value was less reliable for determining reproductive activity in O.mirabilis because the nutritive tissues within the gonads may be utilized to synthesize gametes,leading to a decrease in GI during maturation.The histological results also show that abundant nutritive phagocytes were present in the gonads of O.mirabilis,which,together with the germ cells,aff ected the weight of the gonads.In addition,the mature oocytes of O.mirabilis were relatively small(75–150μm),indicating that the larval development was planktotrophic.This study provided insights into the reproductive patterns and biology of O.mirabilis and is an essential basis for the quantity control of this species in aquaculture areas.
基金Natural Science Foundation of Henan Province,Grant/Award Number:202300410259Henan Postdoctoral Science Foundation,Grant/Award Number:202001043China Postdoctoral Science Foundation,Grant/Award Number:2021T140184。
文摘Background : SHARPIN (SHANK- associated RH domain interactor) is a component ofthe linear ubiquitination complex that regulates the NF- κB signaling pathway. To betterunderstand the function of SHARPIN, we sought to establish a novel geneticallyengineered Syrian hamster with SHARPIN disruption using the CRISPR/Cas9 system.Methods : A single- guide ribonucleic acid targeting exon 1 of SHARPIN gene was designedand constructed. The zygotes generated by cytoplasmic injection of the Cas9/gRNA ribonucleoprotein were transferred into pseudopregnant hamsters. Neonatalmutants were identified by genotyping. SHARPIN protein expression was detectedusing Western blotting assay. Splenic, mesenteric lymph nodes (MLNs), and thymicweights were measured, and organ coefficients were calculated. Histopathologicalexamination of the spleen, liver, lung, small intestine, and esophagus was performedindependently by a pathologist. The expression of lymphocytic markers and cytokineswas evaluated using reverse transcriptase- quantitative polymerase chain reaction.Results : All the offspring harbored germline- transmitted SHARPIN mutations.Compared with wild- type hamsters, SHARPIN protein was undetectable in SHARPIN −/−hamsters. Spleen enlargement and splenic coefficient elevation were spotted inSHARPIN −/− hamsters, with the descent of MLNs and thymuses. Further, eosinophilinfiltration and structural alteration in spleens, livers, lungs, small intestines, and esophagiwere obvious after the deletion of SHARPIN. Notably, the expression of CD94 and CD22 was downregulated in the spleens of knockout (KO) animals. Nonetheless,the expression of CCR3, CCL11, Il4 , and Il13 was upregulated in the esophagi. Theexpression of NF- κB and phosphorylation of NF- κB and IκB protein significantly diminishedin SHARPIN −/− animals.Conclusions : A novel SHARPIN KO hamster was successfully established using theCRISPR/Cas9 system. Abnormal development of secondary lymphoid organs andeosinophil infiltration in multiple organs reveal its potential in delineating SHARPINfunction and chronic inflammation.
基金The NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences under contract No.U1606404the National Natural Science Foundation of China under contract No.41230963+1 种基金the National Basic Research Program(973 program)of China under contract Nos 2011CB403604 and G1999043708the Strategic Priority Research Program of the Chinese Academy of Sciences under contract No.XDA11020305
文摘Calanus sinicus is a calanoid copepod widely distributed in coastal waters of China and Japan, and oversummering strategies may have major impacts on their population dynamics which in turn affect local marine food web structure. The abundance, stage composition, and sex composition of the planktonic copepod C. sinicus were studied from August to October 2002 in the southern Yellow Sea to understand how its population recovers from the over-summering state. Results showed that C. sinicus had low reproduction in August due to high temperature, except in waters near the Cheju Island with rich food and moderate bottom temperature, but the reproduction rates here decreased in September–October as food availability declined. When temperature dropped in September–October, C. sinicus actively propagated in coastal shallow waters. However, reproduction rates of C. sinicus individuals inhabiting the Yellow Sea Cold Water Mass(YSCWM) remained low during the three months of the study. The percentage of C. sinicus females was high during the reproductive period, which suggests that the sex composition of adult C. sinicus may reflect whether or not the population is in the reproductive mode.Numerous fifth copepodite stage(CV) C. sinicus aggregated in the YSCWM in a suspended developmental stage during the three months of this study, and they potentially served as the parental individuals for population development when conditions became optimal for reproduction later in the year.
基金Supported by the Strategic Priority Research Program of the Chinese Academy of Sciences(No.XDA23050401)the National Key Research and Development Program of China(No.2017YFE0111100)+2 种基金the National Key Basic Research Program of China(973 Program)(No.2015CB452903)the Science and Technology Service Network(STS)(No.Y82346101L)the Taishan Scholars Project to SUN Song。
文摘Planktonic Oikopleura dioica respond almost instantly to opportunistic algal blooms,but it is unknown whether the population increase can change from an exponential to a logistic model to avoid a final sudden collapse.To test the hypothesis that intraspecific competition regulates the intrinsic rate of natural increase(r),density-dependent effects on growth and reproduction performance were investigated in O.dioica via laboratory incubations.Over a large food concentration range,batch maturation was observed above the per capita food supply(PFS)of 8.1µgC/ind.in 4.5 d.Somatic growth was saturated beyond this PFS value,whereas gonad length increased continuously.Below this threshold,individuals reached small body and gonad lengths,and maturation was rarely observed during the incubation period.The gonad/body volume and maturation ratios also increased with the PFS.Instead of the food concentration,the r values were regulated by competition pressure via variability in maturation duration and the proportion of mature individuals in the cohorts.When the minimum food demand was satisfied in the designated generation time,the r value tended to be regulated by the spawning proportion in the population.Otherwise,prolonged development duration and decreased r values were expected.
基金Supported by the Strategic Priority Research Program of the Chinese Academy of Sciences(No.XDA23050401)。
文摘Herbivore digestion in aquatic ecosystems is usually considered a method of nutrient repackaging rather than recycling,as recalcitrant and low-level nutrients are presumed for their egesta.We hypothesize that this opinion holds only for nutrients recycled by excretion and egestion,not for those elements recycled overwhelmingly by fecal decomposition.In this study,we compared the dissolution of biogenic silica(BSi),phosphorus(P)and iron(Fe)between two food items and fecal pellets of two marine invertebrates fed on artificial seawaters free of bacteria.Relative to raw food materials,the mass proportion in fecal pellets of BSi increased,while that of P and Fe decreased.During the 21 days of incubation,the total dissolution rate of BSi was 13.9–36.0 times higher in fecal pellets than food items,followed by P(1.5–4.2 times)and Fe(1.1–2.4 times).While the dissolution of BSi and Fe occurred mostly in the first few days,P was mostly released in the last ten days.Regarding BSi dissolution,a higher rate was observed in oyster Crassostrea gigas than the Echiuran Urechis unicinctus,but no significant difference was found between fecal pellets in either species under naturally available diatom food(Phaeodactylum tricornutum)and introduced terrestrial food(rice husk powder),respectively.Our results show direct evidence of digestion-associated nutrients mobilization.BSi dissolution after animal digestion may be similarly efficient to that caused by bacteria colonization in natural seawater.
基金supported in part by the Technology Innovation 2030 under Grant 2022ZD0211700.
文摘For the analysis of spinal and disc diseases,automated tissue segmentation of the lumbar spine is vital.Due to the continuous and concentrated location of the target,the abundance of edge features,and individual differences,conventional automatic segmentation methods perform poorly.Since the success of deep learning in the segmentation of medical images has been shown in the past few years,it has been applied to this task in a number of ways.The multi-scale and multi-modal features of lumbar tissues,however,are rarely explored by methodologies of deep learning.Because of the inadequacies in medical images availability,it is crucial to effectively fuse various modes of data collection for model training to alleviate the problem of insufficient samples.In this paper,we propose a novel multi-modality hierarchical fusion network(MHFN)for improving lumbar spine segmentation by learning robust feature representations from multi-modality magnetic resonance images.An adaptive group fusion module(AGFM)is introduced in this paper to fuse features from various modes to extract cross-modality features that could be valuable.Furthermore,to combine features from low to high levels of cross-modality,we design a hierarchical fusion structure based on AGFM.Compared to the other feature fusion methods,AGFM is more effective based on experimental results on multi-modality MR images of the lumbar spine.To further enhance segmentation accuracy,we compare our network with baseline fusion structures.Compared to the baseline fusion structures(input-level:76.27%,layer-level:78.10%,decision-level:79.14%),our network was able to segment fractured vertebrae more accurately(85.05%).
基金the Key Science and Technology Project of Hainan Province(Key Science and Technology Project ZDKJ202018)the Southern Marine Science and Engineering Guangdong Laboratory(Guangzhou,2019ZD0406)+2 种基金the Chinese Academy of Sciences(QYZDJ-SSW-DQC004)the National Natural Science Foundation of China(81872778,31630004,41911530078)the Ministry of Science and Technology of China(2018YFC1406705)。
文摘Tiacumicin B(also known as fidaxomicin or difimicin)is a marketed 18-membered macrolide antibiotic for the treatment of Clostridium difficile infections.Tiacumicin B is structurally characterized with two chlorine atoms substituted on the aromatic ring,which is installed by the halogenase Tia M.During the study on halide compatibility of Tia M,a facile and nonenzymatic iodination method of didechlorotiacumicin B was discovered,requiring Na I,acid and air for iodination at room temperature.This method was also amenable to other 9 aromatic substrates with electron-rich sites for iodination.