Acorus calamus is a highly valued medicinal plant with global distribution used in several drugs of health care systems. We evaluated the genetic diversity and population structure of 50 populations of A. calamus from...Acorus calamus is a highly valued medicinal plant with global distribution used in several drugs of health care systems. We evaluated the genetic diversity and population structure of 50 populations of A. calamus from different geographical regions in India through RAPD and chloroplast microsatellite markers. From the total screened 82 RAPD primers and 18 cpSSR primers, 10 RAPD and nine cpSSRs were found polymorphic. The selected 10 RAPD primers produced a total of 96 reproducible bands, out of which 65 were polymorphic （67.70%）. Whereas, the selected nine cpSSR markers produced 26 alleles and all of them were polymorphic. The mean genetic diversity （H T ） among populations using RAPD （H T = 0.263） and cpSSR （H T = 0.530） markers was higher in comparison to the mean genetic diversity within populations. Mean coefficient of gene differentiation （G ST ） between the populations was also high for both RAPD （G ST = 0.830） and cpSSR markers （G ST = 0.735）, whereas the estimated gene flow was very low for RAPD （Nm = 0.102） and for cpSSR （Nm = 0.179）. AMOVA analysis revealed that more genetic variation resided among the populations than within populations. Significant differences （p 0.001） were observed between the populations and individuals within the populations. Cluster analysis of RAPD and cpSSR data using UPGMA algorithm based on Nei’s genetic similarity matrix placed the 50 populations into two main clusters. The implication of the results of this study in devising strategy for conservation of A. calamus is discussed.展开更多
Random Amplified Polymorphic DNA （RAPD） polymor- phism was employed to assess the genetic diversity in the elite germplasm＇of Dalbergia sissoo. Sixty-seven clones that are under cultivation in northern India, origi...Random Amplified Polymorphic DNA （RAPD） polymor- phism was employed to assess the genetic diversity in the elite germplasm＇of Dalbergia sissoo. Sixty-seven clones that are under cultivation in northern India, originated frorri six different states of India and Nepal were analyzed with 30 RAPD primers that generated a total of 342 fragments out of which 290 were polymorphic. Total genetic diversity （Ht） varied between 0.01 and 0.37, with an average of 0.19. Shannon＇s Information index （I） varied between 0102 and 0.54, with an average of 0.31. Marker attributes like Polymorphism Information Content （PIC）, Marker Index （MI） and Effective Multiplex Ratio （EMR） values were calculated to assess the discriminatory power of 30 primers used. The PIC values ranged from 0.01 to 0.37 with an average of 0.17 per primer and the EMR ranged from 0.17 to 21.00 with a mean of 8.66 across all genotypes. Closely related clones were C49 and C51 with similarity index of 0.86 while the least similar or most dissimilar clones were C14 and S-DB showing similarity index of 0.58. The UPGMA-phenogram categorized the 67 clones into six clusters based on genetic similarity and dissimilarity. The clustering of clones in relation to their geographical location has been discussed.展开更多
A field trial of 20 seed sources of Asparagus racemosus was conducted at the Forest Research Institute, Dehradun, Uttarakhand, India to evaluate their performance of different economic traits. Genotypic variance, phen...A field trial of 20 seed sources of Asparagus racemosus was conducted at the Forest Research Institute, Dehradun, Uttarakhand, India to evaluate their performance of different economic traits. Genotypic variance, phenotypic variance, genotypic coefficient of variance （GCV） and phenotypic coefficient of variance （PCV） for number of shoots, shoot height, shoot weight, number of roots, root length, root diameter and root weight were calculated. Maximum genotypic and phenotypic variance was observed in shoot height among the shoot - related traits and root length among the root - related traits. For the shoot height, genotypic variance, phenotypic variance, genotypic coefficient of variance, phenotypic coefficient of variance were 231.80, 3924.80, 61.26 and 1037.32, respectively, where those of the root length were 9.55, 16.80, 23.46 and 41.27, respectively. The maximum genetic advance and genetic gain were obtained for shoot height among the shoot-related traits and root length among the root-related traits. Index values were developed for all the seed sources based on the four most important traits, and Panthnagar （Uttrakhand）, Jodhpur （Rajasthan）, Dehradun （Uttarakhand）, Chandigarh （Punjab）, Jammu （Jammu and Kashmir） and Solan （Himachal Pradesh）, were promising seed sources for root production.展开更多
基金supported by the NMPB (National Medicinal Plant Board),India
文摘Acorus calamus is a highly valued medicinal plant with global distribution used in several drugs of health care systems. We evaluated the genetic diversity and population structure of 50 populations of A. calamus from different geographical regions in India through RAPD and chloroplast microsatellite markers. From the total screened 82 RAPD primers and 18 cpSSR primers, 10 RAPD and nine cpSSRs were found polymorphic. The selected 10 RAPD primers produced a total of 96 reproducible bands, out of which 65 were polymorphic （67.70%）. Whereas, the selected nine cpSSR markers produced 26 alleles and all of them were polymorphic. The mean genetic diversity （H T ） among populations using RAPD （H T = 0.263） and cpSSR （H T = 0.530） markers was higher in comparison to the mean genetic diversity within populations. Mean coefficient of gene differentiation （G ST ） between the populations was also high for both RAPD （G ST = 0.830） and cpSSR markers （G ST = 0.735）, whereas the estimated gene flow was very low for RAPD （Nm = 0.102） and for cpSSR （Nm = 0.179）. AMOVA analysis revealed that more genetic variation resided among the populations than within populations. Significant differences （p 0.001） were observed between the populations and individuals within the populations. Cluster analysis of RAPD and cpSSR data using UPGMA algorithm based on Nei’s genetic similarity matrix placed the 50 populations into two main clusters. The implication of the results of this study in devising strategy for conservation of A. calamus is discussed.
文摘Random Amplified Polymorphic DNA （RAPD） polymor- phism was employed to assess the genetic diversity in the elite germplasm＇of Dalbergia sissoo. Sixty-seven clones that are under cultivation in northern India, originated frorri six different states of India and Nepal were analyzed with 30 RAPD primers that generated a total of 342 fragments out of which 290 were polymorphic. Total genetic diversity （Ht） varied between 0.01 and 0.37, with an average of 0.19. Shannon＇s Information index （I） varied between 0102 and 0.54, with an average of 0.31. Marker attributes like Polymorphism Information Content （PIC）, Marker Index （MI） and Effective Multiplex Ratio （EMR） values were calculated to assess the discriminatory power of 30 primers used. The PIC values ranged from 0.01 to 0.37 with an average of 0.17 per primer and the EMR ranged from 0.17 to 21.00 with a mean of 8.66 across all genotypes. Closely related clones were C49 and C51 with similarity index of 0.86 while the least similar or most dissimilar clones were C14 and S-DB showing similarity index of 0.58. The UPGMA-phenogram categorized the 67 clones into six clusters based on genetic similarity and dissimilarity. The clustering of clones in relation to their geographical location has been discussed.
文摘A field trial of 20 seed sources of Asparagus racemosus was conducted at the Forest Research Institute, Dehradun, Uttarakhand, India to evaluate their performance of different economic traits. Genotypic variance, phenotypic variance, genotypic coefficient of variance （GCV） and phenotypic coefficient of variance （PCV） for number of shoots, shoot height, shoot weight, number of roots, root length, root diameter and root weight were calculated. Maximum genotypic and phenotypic variance was observed in shoot height among the shoot - related traits and root length among the root - related traits. For the shoot height, genotypic variance, phenotypic variance, genotypic coefficient of variance, phenotypic coefficient of variance were 231.80, 3924.80, 61.26 and 1037.32, respectively, where those of the root length were 9.55, 16.80, 23.46 and 41.27, respectively. The maximum genetic advance and genetic gain were obtained for shoot height among the shoot-related traits and root length among the root-related traits. Index values were developed for all the seed sources based on the four most important traits, and Panthnagar （Uttrakhand）, Jodhpur （Rajasthan）, Dehradun （Uttarakhand）, Chandigarh （Punjab）, Jammu （Jammu and Kashmir） and Solan （Himachal Pradesh）, were promising seed sources for root production.
