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一株盐单胞菌属(Halomonas)细菌趋化因子受体基因挖掘及相关蛋白序列分析
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作者 徐爽 李晨 +4 位作者 姜嘉琳 谢晓晨 王博 霍忠明 方蕾 《大连海洋大学学报》 CAS CSCD 北大核心 2024年第2期203-214,共12页
为了解一株长牡蛎(Crassostrea gigas)致病性盐单胞菌(Halomonas sp.)7T的趋化性,采用毛细管法研究其趋化行为,并基于全基因组数据,利用KEGG Pathway分析其趋化信号通路,通过与同源物种比对分析趋化因子受体种类,进一步挖掘甲基受体趋... 为了解一株长牡蛎(Crassostrea gigas)致病性盐单胞菌(Halomonas sp.)7T的趋化性,采用毛细管法研究其趋化行为,并基于全基因组数据,利用KEGG Pathway分析其趋化信号通路,通过与同源物种比对分析趋化因子受体种类,进一步挖掘甲基受体趋化蛋白(methyl-accepting chemotaxis proteins,MCPs)序列,再结合MeMe数据库和TMHMM分析MCPs结构。结果表明:Halomonas sp.7T具备趋化行为,其全基因组含有完整趋化信号通路,共有22个基因编码MCPs,涵盖5种常见趋化因子受体;22个MCPs均含有信号转导结构域,其中,19个含有跨膜结构域,3个不含跨膜结构域;基于信号转导结构域内七肽单位保守序列和存在的对称插入缺失对这22个MCPs进行分类,发现17个为36H型,1个为40H型,其余4个与已知分类均不匹配;跨膜结构分布特征和疏水性分析发现,这22个MCPs中有20个符合拓扑结构,其中ClassⅠ型、ClassⅡ型、ClassⅢ型、ClassⅣ型分别为10、4、3、3个,另有2个MCPs不符合拓扑结构。研究表明,长牡蛎致病性盐单胞菌7T具备趋化性,其基因组存在完整趋化信号通路,有22个基因编码MCPs,这些MCPs具有独特的结构,可能参与介导与细菌生存和环境胁迫响应相关的趋化行为。 展开更多
关键词 盐单胞菌 趋化性 趋化因子受体基因 甲基受体趋化蛋白 长牡蛎
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盐度和亚硝酸盐氮胁迫对菲律宾蛤仔“斑马蛤2号”和莆田群体代谢的影响
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作者 周红 谷晶 +4 位作者 朱弦一 郭悦 杨国军 霍忠明 王华 《大连海洋大学学报》 CAS CSCD 北大核心 2023年第4期630-636,共7页
为研究低盐度和亚硝酸盐氮协同对菲律宾蛤仔(Ruditapes philippinarum)的胁迫作用,选取菲律宾蛤仔“斑马蛤2号”(壳长为27.5 mm±1.2 mm)和莆田群体(壳长为31.2 mm±1.8 mm)为试验对象,以盐度30的天然海水为对照,设定盐度分别... 为研究低盐度和亚硝酸盐氮协同对菲律宾蛤仔(Ruditapes philippinarum)的胁迫作用,选取菲律宾蛤仔“斑马蛤2号”(壳长为27.5 mm±1.2 mm)和莆田群体(壳长为31.2 mm±1.8 mm)为试验对象,以盐度30的天然海水为对照,设定盐度分别为25、20、15,亚硝酸盐氮质量浓度分别为0.15、0.30、0.60 mg/L,通过分析菲律宾蛤仔耗氧率、排氨率和鳃丝结构的变化,探讨了低盐度和亚硝酸盐氮单因子胁迫及二者协同胁迫对菲律宾蛤仔呼吸代谢的影响。结果表明:在低盐度胁迫下,“斑马蛤2号”和莆田群体的耗氧率均随盐度的降低而增加,排氨率均呈先降低后增加的趋势;在亚硝酸盐氮胁迫下,“斑马蛤2号”和莆田群体的耗氧率均随亚硝酸盐氮质量浓度的增加而增加,“斑马蛤2号”的排氨率呈先降低后增加的趋势,而莆田群体的排氨率则呈先增加后降低的趋势;在低盐度和亚硝酸盐氮协同作用下,“斑马蛤2号”和莆田群体的耗氧率和排氨率均较低盐度和亚硝酸盐氮单因子胁迫时明显增加,且菲律宾蛤仔鳃组织结构受损,鳃丝出现呼吸上皮细胞脱落;对菲律宾蛤仔代谢过程的氧氮比(O∶N)分析显示,其代谢主要由蛋白质氧化供能,但在低盐度和亚硝酸盐氮协同胁迫下主要由蛋白质供能,辅以脂肪和碳水化合物供能。研究表明,低盐度和亚硝酸盐氮协同胁迫,影响菲律宾蛤仔鳃组织的正常生理功能,并导致其呼吸代谢机能减弱。 展开更多
关键词 菲律宾蛤仔 “斑马蛤2号” 莆田群体 盐度 亚硝酸盐 耗氧率 排氨率
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东营河口贝类增养殖区水质监测及评价
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作者 李翠翠 王璠 +6 位作者 宋志珍 周红 谷晶 王华 杨国军 霍忠明 闫喜武 《渔业研究》 2023年第2期155-162,共8页
为研究山东东营河口贝类增养殖区的水质状况,本研究于2020—2021年对东营河口贝类增养殖区海水水质进行季节性监测,并采用内梅罗环境质量综合评价指数(P)、营养状态指数(E)和有机污染评价指数(A)进行水环境质量状况评价。结果表明,除秋... 为研究山东东营河口贝类增养殖区的水质状况,本研究于2020—2021年对东营河口贝类增养殖区海水水质进行季节性监测,并采用内梅罗环境质量综合评价指数(P)、营养状态指数(E)和有机污染评价指数(A)进行水环境质量状况评价。结果表明,除秋季滩涂区个别监测点外,东营河口贝类增养殖区海水的理化指标和营养盐均达到海水水质二类标准,表明东营河口贝类增养殖区海域海水水质良好。但是,在秋季滩涂养殖区的局部区域有富营养化趋势,需关注秋季化学需氧量和无机氮的变化。本研究结果可为贝类滩涂增养殖区的水环境生态管理提供科学依据。 展开更多
关键词 河口贝类增养殖区 理化指标 营养盐 水环境质量 综合评价
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Effects of Salinity on Embryonic Development, Survival, and Growth of Crassostrea hongkongensis 被引量:6
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作者 huo zhongming WANG Zhaoping +5 位作者 LIANG Jian ZHANG Yuehuan SHEN Jianping YAO Tuo SU Jiaqi YU Ruihai 《Journal of Ocean University of China》 SCIE CAS 2014年第4期666-670,共5页
This study examined the effects of salinity on embryonic development, survival, and growth of the Hong Kong oyster Crassostrea hongkongensis. The embryos, larvae, and juveniles of C. hongkongensis were held in artific... This study examined the effects of salinity on embryonic development, survival, and growth of the Hong Kong oyster Crassostrea hongkongensis. The embryos, larvae, and juveniles of C. hongkongensis were held in artificial seawater at three different salinities(low, 15; medium, 23; and high, 30) to determine the optimum hatchery and nursery conditions for mass production of the seeds. Results showed that the percentage production of straight-hinged larvae from fertilized eggs was significantly lower at the high salinity than at the low- and medium-salinities(P < 0.05). The survival rates of larvae and juveniles differed significantly among the three salinity trials, with the highest survival rate observed at the low salinity(P < 0.05). The shell height of larvae was significantly larger at the low salinity than at the high and medium salinities from days 9 to 15(P < 0.05), whereas that of juveniles was significantly larger at the low salinity than at the high and medium salinities on day 70(P < 0.05). These results indicate that the larvae and juveniles of C. hongkongensis are tolerant to a wide range of salinities(15 to 30), but show better growth and survival at relatively low salinities. Thus, it is recommended to use relatively low salinities in hatchery and nursery systems for improved yields of C. hongkongensis. 展开更多
关键词 胚胎发育 高盐度 香港 海鸥 生长 牡蛎 大规模生产 低矿化度
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β-1,3-葡聚糖对副溶血弧菌感染菲律宾蛤仔(Ruditapes philippinarum)的存活及两种免疫基因表达影响
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作者 孟祥宇 张艳丽 +3 位作者 霍忠明 牟政强 王化敏 闫喜武 《渔业科学进展》 CSCD 北大核心 2018年第5期106-113,共8页
本文以菲律宾蛤仔(Ruditapes philippinarum)为材料,开展了不同浓度β-1,3-葡聚糖对正常菲律宾蛤仔及副溶血弧菌(Viβrio parahaemolyticus)感染后蛤仔的存活率和凝集素基因(Lectin)、Toll样受体2基因(TLR2)的表达研究。结果显示,β-葡... 本文以菲律宾蛤仔(Ruditapes philippinarum)为材料,开展了不同浓度β-1,3-葡聚糖对正常菲律宾蛤仔及副溶血弧菌(Viβrio parahaemolyticus)感染后蛤仔的存活率和凝集素基因(Lectin)、Toll样受体2基因(TLR2)的表达研究。结果显示,β-葡聚糖浸泡蛤仔可以有效提高副溶血弧菌感染后蛤仔的存活率,在1000 mg/L浓度下,存活率最高,未感染组的鳃组织中,TLR2在6 h时达到峰值,显著高于其他时间(P<0.05)。在感染组中,TLR2呈先升高后降低的趋势,在1.5 h时达到峰值。感染组和未感染组的Lectin表达均为先升高后下降趋势。在3 h时,100 mg/L未感染组的Lectin相对表达量显著高于100 mg/L感染组(P<0.05)。在外套膜中,感染组和未感染组TLR2在3~12 h之间表达量逐渐降低。在24 h时,1000 mg/L未感染组表达量最高。感染组Lectin在外套膜中,浓度为1000 mg/L的实验组比100 mg/L实验组各时段都有更高的表达量,但只有0和24 h时差异显著(P<0.05)。蛤仔鳃和外套膜Lectin的表达模式不同,但β-葡聚糖的浸泡都促进了Lectin在感染初期的表达。从结果上看,β-葡聚糖的浸泡会增加这2种基因的相对表达,被β-葡聚糖浸泡过的蛤仔被副溶血弧菌感染后,会更为快速地表达TLR2和Lectin。本研究旨在通过不同浸泡浓度β-葡聚糖对蛤仔存活及免疫基因表达的影响,初步了解β-葡聚糖对蛤仔免疫力的作用,为蛤仔亲贝的保种、苗种繁育及池塘养殖的疾病防控提供一定的理论依据。 展开更多
关键词 Β-葡聚糖 菲律宾蛤 副溶血弧菌 免疫基因
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菲律宾蛤仔不同发育时期及成体不同组织中内参基因筛选 被引量:6
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作者 牟政强 闫路路 +2 位作者 王化敏 霍忠明 闫喜武 《水产学报》 CAS CSCD 北大核心 2018年第5期663-672,共10页
为筛选出菲律宾蛤仔17个发育时期及成体7个组织中的最适内参基因,实验采用3个内参基因筛选方法ge Norm、Norm Finder及ΔCt对菲律宾蛤仔不同发育时期和成体不同组织中的12个候选内参基因延伸因子1α基因(EF1A)、TATA盒结合蛋白基因(TBP... 为筛选出菲律宾蛤仔17个发育时期及成体7个组织中的最适内参基因,实验采用3个内参基因筛选方法ge Norm、Norm Finder及ΔCt对菲律宾蛤仔不同发育时期和成体不同组织中的12个候选内参基因延伸因子1α基因(EF1A)、TATA盒结合蛋白基因(TBP)、组蛋白H3基因(HIS)、细胞色素b5基因(CYTB5)、泛素缀合酶基因(UCE)、核糖体蛋白L8基因(RPL8)、核糖体蛋白S23基因(RPS23)、核糖体蛋白L2基因(RPL2)、细胞色素C基因(CYTC)、生长因子受体结合蛋白2基因(GFRP2)、肌动蛋白基因(ACT)和微管蛋白基因(TUB)进行表达稳定性分析。结果显示,菲律宾蛤仔不同发育时期q RT-PCR分析需要3个内参基因,分别为CYTC、CYTB5和RPS23;菲律宾蛤仔成体不同组织q RT-PCR分析需要2个内参基因,分别为CYTB5和GFRP2。ACT在菲律宾蛤仔不同发育阶段和不同组织中表达最不稳定。 展开更多
关键词 菲律宾蛤仔 内参基因 实时荧光定量PCR 不同发育时期 不同组织
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总氨态氮和pH对菲律宾蛤仔“斑马蛤2号”品系幼贝潜沙的影响 被引量:3
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作者 马倩颖 杨凤 +2 位作者 霍忠明 赵雯 闫喜武 《大连海洋大学学报》 CAS CSCD 北大核心 2021年第2期289-294,共6页
为研究总氨态氮(TAN)和pH对菲律宾蛤仔Ruditapes philippinarum“斑马蛤2号”(简称“Zebra 2”)品系幼贝潜沙的影响,在实验室内以天然海水为对照,研究了不同TAN质量浓度(0.12、0.51、1.03、1.64、2.93、5.93、12.30、28.00、54.90 mg/L)... 为研究总氨态氮(TAN)和pH对菲律宾蛤仔Ruditapes philippinarum“斑马蛤2号”(简称“Zebra 2”)品系幼贝潜沙的影响,在实验室内以天然海水为对照,研究了不同TAN质量浓度(0.12、0.51、1.03、1.64、2.93、5.93、12.30、28.00、54.90 mg/L)和pH(7.00、7.31、7.55、7.77、8.15、8.27、8.54、8.81、9.09)对“Zebra 2”蛤仔幼贝(壳长为4.78 mm±0.60 mm)潜沙的影响。结果表明:TAN胁迫试验显示,在水温20.7℃、盐度29和pH 8.12条件下,ρ(TAN)≤54.90 mg/L时对幼贝竖壳ET5无显著性影响(P>0.05),对竖壳ET50和潜沙ET50的最大毒物允许浓度(MATC)为28.00~54.90 mg/L,对潜沙ET100的MATC为0.51~1.03 mg/L,对24 h潜沙率的MATC为5.93~12.30 mg/L;pH胁迫试验显示,在水温27.1℃、盐度22.8及pH 7.00~9.09条件下,幼贝均能潜沙,但不同pH条件下潜沙速度有差异,pH为7.00~9.09时对幼贝竖壳ET5无显著性影响(P>0.05),pH为7.55~9.09时对竖壳ET50无影响,pH为7.31~9.09时对潜沙ET50无影响,pH为7.31~8.27时对潜沙ET100无影响,pH为7.00~9.09时对24 h潜沙率无显著性影响(P>0.05)。研究表明:适宜“Zebra 2”蛤仔幼贝潜沙ET100的TAN为0.12~0.51 mg/L或pH为7.31~8.27;pH为7.00~9.09时对蛤仔幼贝24 h潜沙率无影响,而TAN≥28.00 mg/L时导致其24 h潜沙率明显下降。 展开更多
关键词 总氨态氮 PH “斑马蛤2号”品系 幼贝 潜沙
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Effect of Substrate Component on the Growth and Survival of Juvenile Sunray Surf Clam(Mactra chinensis Philippi) 被引量:3
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作者 ZHANG Xuekai LI Zhuang +4 位作者 huo zhongming YAN Xiwu YANG Feng LIU Hui ZHANG Xingzhi 《Journal of Ocean University of China》 SCIE CAS 2016年第4期676-680,共5页
Substrate is a critical environmental factor affecting the activity of bivalves. To examine the effect of the substrate component on the growth and survival of juvenile sunray surf clam(Mactra chinensis Philippi), a s... Substrate is a critical environmental factor affecting the activity of bivalves. To examine the effect of the substrate component on the growth and survival of juvenile sunray surf clam(Mactra chinensis Philippi), a series of short-term experiments were conducted using a variety of substrates with different ratios of sand to mud. The experimental group cultured without substrate showed poor survival, with all juveniles died after day 20. The juveniles cultured in mud without sand showed a lower survival rate(25.54% ± 0.40% on day 45) than those in other groups. The juveniles cultured in sand without mud, or the mixtures of sand and mud with a ratio of 1:1 and 2:1, respectively, exhibited modest survival at day 45. Maximal weight gain rate(WGR), shell length growth rate(LGR), and specific growth rate(SGR) were observed when the sand concentration was 61.97%, 77.69%, and 64.64%, respectively. As the fast growth and high survival were observed when the sand to mud ratio was 1:1(50% sand) and 2:1(67% sand), a sand concentration of more than 50% is optimal. The optimal concentration of sand in the substrate for rearing juvenile sunray surf clams was 67% which resulted in the fastest growth and highest survival. These results can be used to developing a nursery/farming technique of improving the yield of sunray surf clams. 展开更多
关键词 Mactra chinensis Philippi substrate concentration GROWTH SURVIVAL
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Larval and Juvenile Growth Performance of Manila Clam Hybrids of Two Full-Sib Families 被引量:2
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作者 huo zhongming YAN Xiwu +3 位作者 ZHAO Liqiang LIANG Jian YANG Feng ZHANG Guofan 《Journal of Ocean University of China》 SCIE CAS 2015年第3期564-568,共5页
In order to determine whether growth performance could be improved by hybridizing full-sib families of Manila clam(Ruditapes philippinarum), crosses between two full-sib families including self and reciprocal crosses ... In order to determine whether growth performance could be improved by hybridizing full-sib families of Manila clam(Ruditapes philippinarum), crosses between two full-sib families including self and reciprocal crosses were carried out. The effects of heterosis, combining ability and interaction on the growth of shell length were estimated. The results showed that the growth of hybrid larvae was intermediate between parents on days 6 and 9. Heterosis on shell length was observed, which varied at juvenile stage. The cross of ♂A×♀B(Hp varied between 10.41% and 68.27%) displayed larger heterosis than ♂B×♀A(Hp varied between 1.89% and 32.33%) did, suggesting that ♂A×♀B was an ideal hatchery method of improving the growth performance of Manila clam. The variances of general combining ability(GCA), special combining ability(SCA) and interaction(I) were significant in shell length(P < 0.05), indicating that both additive and non-additive genetic factors were important contributors to the growth of larvae and juveniles. The GCA for shell length of ♂A×♀B was higher than that of ♂B×♀A at both larval and juvenile stages. This confirmed that the cross between ♂A and ♀B showed great growth in shell length. In summary, the growth of Manila clam seeds could be improved by hybridizing selected parents from large numbers of full-sib families. 展开更多
关键词 菲律宾蛤仔 全同胞家系 生长性能 混合 马尼拉 一般配合力 幼体 杂交组合
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Inbreeding Depression on Growth and Survival of Full-Sib Family of Manila Clam(Ruditapes philippinarum) 被引量:2
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作者 huo zhongming LI Na +3 位作者 ZHANG Xuekai LI Ying YAN Xiwu YANG Feng 《Journal of Ocean University of China》 SCIE CAS CSCD 2017年第1期145-150,共6页
In present study, the inbreeding depression(ID) of growth and survival of Manila clam(Ruditapes philippinarum) was investigated at larval and juvenile stages. Nine inbred families(A_2, B_2, C_2, D_2, E_2, F_2, G_2, H_... In present study, the inbreeding depression(ID) of growth and survival of Manila clam(Ruditapes philippinarum) was investigated at larval and juvenile stages. Nine inbred families(A_2, B_2, C_2, D_2, E_2, F_2, G_2, H_2 and I_2) were established by mating within nine full-sib families with expected inbreeding coefficient of 0.25. Inbred families showed significant differences in shell length and hatching rate of D-larvae(straight-hinged larvae). The larvae of the nine inbred families grew slower than those of control group(CG), and their ID value ranged from 0.81% ± 6.09% to 16.10% ± 1.49%. The ID value of larval survival rate varied between 27.47% ± 9.36% and 70.50% ± 13.66%. The ID was also detected for juvenile growth in A_2, B_2, C_2, and D_2, which ranged from 4.60 ± 2.21 to 17.71 ± 7.73. The A_2 family maintained the highest juvenile survival rate, whereas the other inbred families exhibited ID values varying between 62.79% ± 4.54% and 96.14% ± 0.87%. The linear relationship of estimated ID between growth and survival was negatively correlated(R =-0.434, P < 0.05). The results of this study suggested that the ID of growth was common at the larval stage but was less prevalent at juvenile stage. In contrast, the ID of survival increased from larval to juvenile stage. A better understanding of the effect of inbreeding may aid to selective breeding of Manila clam. 展开更多
关键词 Ruditapes philippinarum GROWTH SURVIVAL INBREEDING DEPRESSION
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Mass Selection for Fast Growth in the Third Generation of the Orange Line of the Manila Clam Ruditapes philippinarum 被引量:1
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作者 LIANG Jian huo zhongming +2 位作者 GUO Yongjun LI Yongren YAN Xiwu 《Journal of Ocean University of China》 SCIE CAS CSCD 2019年第6期1481-1485,共5页
The Manila clam Ruditapes philippinarum is natively distributed along the Pacific coast of Asia,where it is one of the most important bivalve species for local fisheries.This species has been intentionally introduced ... The Manila clam Ruditapes philippinarum is natively distributed along the Pacific coast of Asia,where it is one of the most important bivalve species for local fisheries.This species has been intentionally introduced due to its high adaptability to various coastal environments and is currently widely cultivated in Europe and North America.We have initiated a selective breeding program to improve the growth rate of the Manila clam since 2007,and a full-sib family with orange shell color was selected.This family features high survival but slow growth.Thereafter,two generations of mass selection were conducted in this family by 10% upward selection for faster growth.In 2011,three types of lines were produced by selecting the breeder from the second-generation of selected lines.These lines are SS(subject to three generations of selection for growth in shell length),SC(selected for the second but not the third generation),and C(randomly sampled individuals from the national population).The genetic parameters of the shell length including hR^2(realized heritability),SR(selection response),and GG(genetic gain)were analyzed.Results showed that the shell length of the SS line was significantly larger than those of the SC and C lines at all developmental stages(P<0.05).For the larval stage,the values of hR^2,SR,and GG were 0.42,0.73,and 6.66,respectively.For the juvenile stage,the values of hR^2,SR,and GG were 0.40,0.69,21.76,respectively.For grow-out stage,the values of hR^2,SR,and GG were 0.48,0.83,and 18.22,respectively.The results of hR^2 indicated the good potential of the SS line in selective breeding.The level of GG improvement was encouraging and consistent with the previous expectations.No inbreeding depressions in the shell length were observed in the SS and SC lines at all sampling days.All of the results indicate that maintaining selection pressure in successive generations may be effective in the selective breeding program of this family. 展开更多
关键词 Ruditapes philippinarum mass selection realized HERITABILITY genetic GAIN INBREEDING DEPRESSION
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低温胁迫对不同群体菲律宾蛤仔存活率及脂肪酸代谢相关基因SCD、FAD和ACC表达的影响 被引量:1
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作者 李宁 聂鸿涛 +2 位作者 黎强 霍忠明 闫喜武 《大连海洋大学学报》 CAS CSCD 北大核心 2022年第4期636-642,共7页
为研究低温胁迫对菲律宾蛤仔Ruditapes philippinarum“斑马蛤2号”存活和脂肪酸代谢相关基因的影响,采用低温(-1、4、12℃)胁迫方法,观察了3个群体(“斑马蛤2号”、辽宁大连群体和广西北海群体)在不同温度胁迫下的生存差异,并从低温转... 为研究低温胁迫对菲律宾蛤仔Ruditapes philippinarum“斑马蛤2号”存活和脂肪酸代谢相关基因的影响,采用低温(-1、4、12℃)胁迫方法,观察了3个群体(“斑马蛤2号”、辽宁大连群体和广西北海群体)在不同温度胁迫下的生存差异,并从低温转录组中挑选3个蛤仔脂肪酸代谢相关基因——硬脂酰辅酶A去饱和酶(SCD)、脂肪酸去饱和酶(FAD)和乙酰辅酶A羧化酶(ACC)基因,采用qRT-PCR方法,分析了不同低温胁迫下不同群体鳃组织中3个基因的表达变化规律。结果表明:菲律宾蛤仔“斑马蛤2号”和南北方野生群体蛤仔急性低温(-1、4℃)胁迫9 d时,存活率依次为“斑马蛤2号”>辽宁大连群体>广西北海群体;3个脂肪酸代谢相关基因在菲律宾蛤仔鳃组织中的表达与温度显著相关(P<0.05),随温度从12℃降低到-1℃,3个基因表达量总体呈升高的趋势;在-1℃胁迫下,与0 h相比,3个蛤仔群体鳃组织中的SCD、FAD基因表达量在12~72 h显著上调(P<0.05),3个群体的ACC基因表达量分别在不同时间点显著上调,“斑马蛤2号”鳃中3个基因表达量的上调幅度总体上显著高于广西北海群体和辽宁大连群体(P<0.05)。研究表明,在-1℃条件下,“斑马蛤2号”的存活率和耐低温能力明显高于辽宁大连和广西北海群体,且“斑马蛤2号”的SCD、FAD和ACC基因高表达可能与其耐低温能力强有关。 展开更多
关键词 菲律宾蛤仔 低温 存活率 脂肪酸代谢 基因表达
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“莱州红”菲律宾蛤仔家系建立及生长性状遗传参数估计 被引量:1
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作者 梁腾 李金龙 +11 位作者 马斌 车宗豪 王海生 罗星红 金燕 赵侠 丁鉴锋 霍忠明 滕军 毛东亮 翟介明 闫喜武 《大连海洋大学学报》 CAS CSCD 北大核心 2022年第2期258-267,共10页
为选育菲律宾蛤仔Ruditapes philippinarum(简称蛤仔)“莱州红”新品系,以“莱州红”野生个体为材料,采用巢式设计,以1个父本与3个母本交配,建立11个父系半同胞和33个母系全同胞家系,并对“莱州红”蛤仔生长性状进行家系聚类分析和遗传... 为选育菲律宾蛤仔Ruditapes philippinarum(简称蛤仔)“莱州红”新品系,以“莱州红”野生个体为材料,采用巢式设计,以1个父本与3个母本交配,建立11个父系半同胞和33个母系全同胞家系,并对“莱州红”蛤仔生长性状进行家系聚类分析和遗传参数估计。结果表明:浮游期各家系平均壳长、壳高绝对生长量分别为(6.32±0.67)、(6.69±0.80)μm/d,E_(1)、I_(2)家系生长优势明显;稚贝期各家系平均壳长、壳高绝对生长量分别为(61.77±38.42)、(61.03±31.07)μm/d,G_(3)、F_(1)、F_(2)、B_(2)、B_(1)家系具有明显的生长优势;室内幼贝培养期,各家系平均壳长、壳高绝对生长量分别为(123.93±48.05)、(86.17±36.71)μm/d,G_(3)家系生长优势明显;室外中间培育期,各家系平均壳长、壳高绝对生长量分别为(54.27±38.61)、(38.69±18.49)μm/d,I_(3)、G_(3)、K_(3)、J_(1)、H_(2)家系生长优势明显;“莱州红”蛤仔100日龄时壳长、壳高遗传力分别为(0.35±0.09)、(0.34±0.10),遗传相关和表型相关分别为(0.9833±0.0095)、(0.9904±0.0122);“莱州红”蛤仔200日龄时壳长、壳高遗传力分别为(0.19±0.10)、(0.18±0.11),遗传相关和表型相关分别为(0.9302±0.0054)、(0.9249±0.0081)。研究表明,“莱州红”蛤仔生长性状属中低度遗传力,具有较大选育潜力,G_(3)家系生长速度较快,可作为选育核心家系。 展开更多
关键词 菲律宾蛤仔 聚类分析 遗传育种 遗传力 遗传相关
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基于线粒体16S rRNA基因序列的中日朝菲律宾蛤仔野生群体遗传多样性分析 被引量:1
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作者 谭月 邱明 +4 位作者 李金龙 左陆雅 吴婉婷 霍忠明 闫喜武 《大连海洋大学学报》 CAS CSCD 北大核心 2021年第1期127-134,共8页
为了解中国菲律宾蛤仔Ruditapes philippinarum野生苗种产区的群体和潜在可作修复用途的日本、朝鲜群体的种质遗传基础,以中国山东莱州(LZ)、广西北海(BH)、辽宁营口(YK)、天津(TJ)4个野生群体,以及日本北海道(JH)和朝鲜新义州(NKS)野... 为了解中国菲律宾蛤仔Ruditapes philippinarum野生苗种产区的群体和潜在可作修复用途的日本、朝鲜群体的种质遗传基础,以中国山东莱州(LZ)、广西北海(BH)、辽宁营口(YK)、天津(TJ)4个野生群体,以及日本北海道(JH)和朝鲜新义州(NKS)野生群体(各10个)为材料,通过线粒体16S rRNA基因片段扩增测序,比较了各群体的遗传结构和遗传多样性。结果表明:菲律宾蛤仔16S rRNA序列扩增片段为535 bp,基因片段的T、C、A、G含量分别为33.3%、10.9%、33.8%和22.0%,A+T含量为67.1%,60个个体共确定了20个单倍型,不同个体间存在单倍型共享现象;6个群体的单倍型多样性(Hd)为0.378~0.911,核苷酸多样性(P_(i))为0.00075~0.01060,核苷酸差异数(K)为0.400~5.578;菲律宾蛤仔中国天津、营口、莱州及北海4个群体具有较丰富的遗传多样性,朝鲜新义州和日本北海道群体遗传多样性(H_(d)<0.5,P_(i)<0.005)较低。研究表明,中日朝菲律宾蛤仔野生群体可划分为南、北方谱系,即北海群体为南方谱系,其他5个群体为北方谱系,中国北方的3个群体(营口、天津和莱州)及日本、朝鲜群体间存在距离隔离模式基因流,中国人工异地移养菲律宾蛤仔活动对本地野生群体基因资源产生一定影响,本研究结果可为菲律宾蛤仔种质资源保护和可持续利用提供参考。 展开更多
关键词 菲律宾蛤仔 线粒体16S rRNA 遗传多样性 遗传分化
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Growth Performance of Larval and Juvenile Manila Clam(Ruditapes philippinarum) from Divergently Selected Individuals of a Full-Sib Family
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作者 huo zhongming LI Xiaotong +4 位作者 SUN Qian LI Yongren ZHANG Xuekai YAN Xiwu YANG Feng 《Journal of Ocean University of China》 SCIE CAS 2016年第6期1046-1050,共5页
In this study, the method of divergent selection was employed to test the larval and juvenile growth performance within a full-sib family of Manila clam Ruditapes philippinarum. The 10% largest and 10% smallest clam i... In this study, the method of divergent selection was employed to test the larval and juvenile growth performance within a full-sib family of Manila clam Ruditapes philippinarum. The 10% largest and 10% smallest clam individuals(on the basis of shell length) of a full-sib family were selected as parents for the fast and slow growing lines, respectively. The difference in shell length was significant among the three lines(fast, control, and slow) tested. The sequence of shell length were fast line > control line > slow line. The responses to selection, realized heritability, and genetic gain were 0.06%–0.81%, 0.04%–0.47% and 0.58%–18.89% in the fast direction, respectively; and were 0.14%–1.27%, 0.08%–0.73%, and 0.31%–49.03% in the slow direction, respectively. The results suggested that there was a large portion of additive genetic variance affecting the growth in the full-sib family. Selection in the fast direction within the full-sib family would greatly improve the growth of R. philippinarum. 展开更多
关键词 全同胞家系 生长性能 双向选择 马尼拉 仔稚鱼 蛤仔 个体 遗传增益
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Transcriptome Analysis of Crassostrea sikamea (♀) × Crassostrea gigas (♂) Hybrids Under and After Thermal Stress
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作者 ZHANG Xuekai FAN Chao +6 位作者 ZHANG Xingzhi LI Qiongzhen LI Yangchun MA Peizhen YUE Shaobo huo zhongming WANG Zhaoping 《Journal of Ocean University of China》 SCIE CAS CSCD 2022年第1期213-224,共12页
Crossbreeding is an effective approach to manage the genetic decline in aquaculture.One-way hybrids of Crassostrea sikamea(♀)and Crassostrea gigas(♂)have advantages in growth traits and adaptation to high temperatur... Crossbreeding is an effective approach to manage the genetic decline in aquaculture.One-way hybrids of Crassostrea sikamea(♀)and Crassostrea gigas(♂)have advantages in growth traits and adaptation to high temperature.Here,we used high-throughput sequencing to analyze the molecular processes in the hybrids under and after thermal stress.The hybrids were cultured in the seawater with an increasing temperature from 25℃to 40℃during 10 hours,which is regarded as the thermal stress stage.Then the temperature decreased from 40℃to 25℃within 2 h,which is regarded as the recovery stage.In this study,1293 significant diffe-rentially expressed genes(DEGs)were obtained under thermal stress,of which 576 were upregulated and 717 were downregulated,and 740 significant differentially expressed genes(DEGs)were obtained in the recovery stage,of which the number of upregulated and downregulated genes was 409 and 331,respectively.The antigen processing and presentation,NOD-like,and NF-kappa B path-ways were significantly enriched during the thermal stress stage.The MAPK and PPAR signaling pathways were significantly enrich-ed during the recovery stage.The HSP70,HSP90,and CANX genes were strongly and rapidly upregulated in the control/thermal stress groups but were slightly less upregulated in the thermal stress/recovery group.These results indicate that the innate immune system or nonspecific immunity was deployed to protect interior tissues from thermal stress.In addition,85%of the mutual DEGs were involved in bidirectional regulation(up/down or down/up)when the oysters were removed from the thermal stress to recover.This study provides preliminary insight into the molecular response of C.sikamea(♀)and C.gigas(♂)hybrids to thermal stress and provides a basis for future studies on temperature-adaptation and the possible expansion of hybrid breeding. 展开更多
关键词 oyster hybrids GILL thermal stress recovery TRANSCRIPTOME
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Seawater acidification affects the immune enzyme activities of the Manila clam Ruditapes philippinarum
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作者 霍忠明 孟祥宇 +7 位作者 Md.Golam RBBANI 曹纬楠 吴启迪 李莹 王靖天 袁洪梅 杨凤 闫喜武 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2018年第5期1688-1696,共9页
Ocean acidification leads to changes in physiological and immune responses of bivalves, but the eff ect on the immune enzyme activities of the Manila clam, R uditapes philippinarum, when the pH is lower than the norma... Ocean acidification leads to changes in physiological and immune responses of bivalves, but the eff ect on the immune enzyme activities of the Manila clam, R uditapes philippinarum, when the pH is lower than the normal value has not been studied in detail. In this study, experiments were conducted to determine how pH(7.4, 7.7, 8.0) affects the immune enzyme activities in the gill and hemocytes of the Manila clam. Membrane stability and phagocytosis increased with decrease of pH from 8.0 to 7.7 and then decreased at pH 7.4. The total protein content in the hemocytes and gills decreased with decreasing pH. Lysozyme content in the hemocytes increased with decreasing pH, and the diff erences were significant among the different pH groups(P < 0.05). Adenosine triphosphatase activity at pH 7.4 was significantly higher than in the other two groups, but no significant diff erence was observed between pH 7.7 and 8.0. Catalase activity decreased from pH 8.0 to 7.7 and then increased at pH 7.4, and the dif ferences were significant among the experimental groups( P < 0.05). These findings provide valuable information about the immune response of R. philippinarum to reduced water pH and insights for future research investigating exposure of bivalves to elevated CO_2 conditions. 展开更多
关键词 海洋酸化 生物学 免疫系统 生物技术
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