通过EMS诱变籼稻品种IR64获得一个稳定遗传的淡褐色斑点叶突变体lbsl1(light brown spotted leaf 1)。在自然条件下,突变体播种后10～14d,叶片上出现淡褐色斑点,随后逐渐扩散至全叶,第1叶至剑叶上均有淡褐色斑,为全生育期性状。斑点性...通过EMS诱变籼稻品种IR64获得一个稳定遗传的淡褐色斑点叶突变体lbsl1(light brown spotted leaf 1)。在自然条件下,突变体播种后10～14d,叶片上出现淡褐色斑点,随后逐渐扩散至全叶,第1叶至剑叶上均有淡褐色斑,为全生育期性状。斑点性状的表达对株高、生育期、结实率和千粒重等农艺性状具有显著的影响。遗传分析结果表明,该淡褐色斑点叶性状受一个隐性核基因控制。将突变体lbsl1与正常叶色水稻Morobereken杂交构建F2定位群体,利用SSR标记,最终将该淡褐叶基因lbsl1(t)定位在第6染色体短臂上一个约130kb的区段上。定位的结果和发展的群体为该基因的进一步精细定位和克隆奠定了基础。展开更多
The phenotypically uniform indica rice variety IR64 was chosen for study of the source and inheritance of within cultivar residual variation using a set of SSR markers.Molecular heterogeneity in IR64 was identified on...The phenotypically uniform indica rice variety IR64 was chosen for study of the source and inheritance of within cultivar residual variation using a set of SSR markers.Molecular heterogeneity in IR64 was identified on the short arm of chromosome 2 involving at least five SSR loci spanning nearly 30 cM.The SSR variations originated from the parental lines of IR64(IR5657-33-2 /IR2061-465-1-5-5)and were segregating in the selfed bulk seed stock in a Mendelian manner for more than 20 years.This study was one of few examples to verify successfully that within cultivar variations of SSR in morphologically uniform selfing crops came from its parental lines,which has immediate and commercial applications including test of seed purity,varietal fingerprinting,and curation and propagation of germplasm collections.展开更多
A light brown spotted-leaf mutant of rice was isolated from an ethane methyl sulfonate （EMS）- induced IR64 mutant bank. The mutant, designated as Ibsll （light brown spotted-leaf 1）, displayed light brown spot in t...A light brown spotted-leaf mutant of rice was isolated from an ethane methyl sulfonate （EMS）- induced IR64 mutant bank. The mutant, designated as Ibsll （light brown spotted-leaf 1）, displayed light brown spot in the whole growth period from the first leaf to the flag leaf under natural summer field conditions. Agronomic traits including plant height, growth duration, number of filled grains per panicle, seed-setting rate and 1000-grain weight of the mutant were significantly affected. Genetic analysis showed that the mutation was controlled by a single recessive gene, tentatively named Ibsll（t）, which was mapped to the short arm of chromosome 6. By developing simple sequence repeat （SSR） markers, the gene was finally delimited to an interval of 130 kb between markers RM586 and RM588. The Ibsll（t） gene is likely a novel rice spotted-leaf gene since no other similar genes have been identified near the chromosomal region. The genetic data and recombination populations provided will facilitate further fine-mapping and cloning of the gene.展开更多
A high throughput rice DNA mini-preparation method was developed. The method is suitable for large-scale mutant bank screening as well as large mapping populations with characteristics of maintaining relatively high l...A high throughput rice DNA mini-preparation method was developed. The method is suitable for large-scale mutant bank screening as well as large mapping populations with characteristics of maintaining relatively high level of DNA purity and concentration. The extracted DNA was tested and suitable for regular PCR amplification （SSR） and for Targeting Induced Local Lesion in Genome （TILLING） analysis.展开更多
The phenotypically uniform indica variety IR64 was chosen for study of the source and inheritance of within cultivar residual variation using a set of SSR markers. Residual heterogeneity in IR64 was identified on the ...The phenotypically uniform indica variety IR64 was chosen for study of the source and inheritance of within cultivar residual variation using a set of SSR markers. Residual heterogeneity in IR64 was identified on the short arm of chromosome 2 involving at least 5 SSR loci spanning nearly 30 cM. The SSR variations originated from the parental lines of IR64 （IR5657-33-2 / IR2061-465-1-5-5） and were segregating in the selfed bulk seed stock in a Mendelian manner for more than 20 years. This study verified that the within cultivar variations of SSR in a morphologically uniform variety IR64 of a selfing crop came from its parental lines, which has immediate and commercial applications including test of hybrid seed purity, varietal fingerprinting, and curation and propagation of germplasm collections.展开更多
Diversity array technology （DART^TM） was a genotyping tool characterized gel-independent and high throughput. The main purpose of present study is to validate DArT for rice （Oryza sativa L.）genotyping in a high th...Diversity array technology （DART^TM） was a genotyping tool characterized gel-independent and high throughput. The main purpose of present study is to validate DArT for rice （Oryza sativa L.）genotyping in a high throughput manner. Technically, the main objective was to generate a rice general purpose gene pool, and optimize this genomic tool in order to evaluate rice germplasm genetic diversity. To achieve this, firstly, a generalpurpose DArT array was developed. Ten representatives from 24 varieties were hybridized with the general-purpose array to determine the informativeness of the clones printed on the array. The informative 1 152 clones were re-arrayed on a slide and used to fingerprint 17 of 24 germplasms. Hybridizing targets prepared from the germplasm to be assayed to the DNA array gave DNA fingerprints of germplasms. Raw data were normalized and transformed into binary data, which were then analyzed by using NTSYSpc （Numerical taxonomy system for cluster and ordination analysis, v. 2.02j） software package. The graphically displayed dendrogram derived from the array experimental data was matched with simple sequence repeats genotyping outline and varieties＇ pedigree deviation of the different varieties. Considering DArT is a sequence-independent genotyping approach, it will be applied in studies of the genetic diversity and the gene mapping of diverse of organisms, especially for those crops with less-developed molecular markers.展开更多
文摘通过EMS诱变籼稻品种IR64获得一个稳定遗传的淡褐色斑点叶突变体lbsl1(light brown spotted leaf 1)。在自然条件下,突变体播种后10～14d,叶片上出现淡褐色斑点,随后逐渐扩散至全叶,第1叶至剑叶上均有淡褐色斑,为全生育期性状。斑点性状的表达对株高、生育期、结实率和千粒重等农艺性状具有显著的影响。遗传分析结果表明,该淡褐色斑点叶性状受一个隐性核基因控制。将突变体lbsl1与正常叶色水稻Morobereken杂交构建F2定位群体,利用SSR标记,最终将该淡褐叶基因lbsl1(t)定位在第6染色体短臂上一个约130kb的区段上。定位的结果和发展的群体为该基因的进一步精细定位和克隆奠定了基础。
文摘The phenotypically uniform indica rice variety IR64 was chosen for study of the source and inheritance of within cultivar residual variation using a set of SSR markers.Molecular heterogeneity in IR64 was identified on the short arm of chromosome 2 involving at least five SSR loci spanning nearly 30 cM.The SSR variations originated from the parental lines of IR64(IR5657-33-2 /IR2061-465-1-5-5)and were segregating in the selfed bulk seed stock in a Mendelian manner for more than 20 years.This study was one of few examples to verify successfully that within cultivar variations of SSR in morphologically uniform selfing crops came from its parental lines,which has immediate and commercial applications including test of seed purity,varietal fingerprinting,and curation and propagation of germplasm collections.
基金supported by the State Key Laboratory of Rice Biology (Grant No. ZZKT200801)the National High Technology Research and Development Program of China (Grant No. 2011AA10A101)Central Public Interest Research Institute Special Fund in China (Grant No. 2009RG001-2)
文摘A light brown spotted-leaf mutant of rice was isolated from an ethane methyl sulfonate （EMS）- induced IR64 mutant bank. The mutant, designated as Ibsll （light brown spotted-leaf 1）, displayed light brown spot in the whole growth period from the first leaf to the flag leaf under natural summer field conditions. Agronomic traits including plant height, growth duration, number of filled grains per panicle, seed-setting rate and 1000-grain weight of the mutant were significantly affected. Genetic analysis showed that the mutation was controlled by a single recessive gene, tentatively named Ibsll（t）, which was mapped to the short arm of chromosome 6. By developing simple sequence repeat （SSR） markers, the gene was finally delimited to an interval of 130 kb between markers RM586 and RM588. The Ibsll（t） gene is likely a novel rice spotted-leaf gene since no other similar genes have been identified near the chromosomal region. The genetic data and recombination populations provided will facilitate further fine-mapping and cloning of the gene.
文摘A high throughput rice DNA mini-preparation method was developed. The method is suitable for large-scale mutant bank screening as well as large mapping populations with characteristics of maintaining relatively high level of DNA purity and concentration. The extracted DNA was tested and suitable for regular PCR amplification （SSR） and for Targeting Induced Local Lesion in Genome （TILLING） analysis.
基金This paper was translated from its Chinese version in Chinese Journal of Rice Science.
文摘The phenotypically uniform indica variety IR64 was chosen for study of the source and inheritance of within cultivar residual variation using a set of SSR markers. Residual heterogeneity in IR64 was identified on the short arm of chromosome 2 involving at least 5 SSR loci spanning nearly 30 cM. The SSR variations originated from the parental lines of IR64 （IR5657-33-2 / IR2061-465-1-5-5） and were segregating in the selfed bulk seed stock in a Mendelian manner for more than 20 years. This study verified that the within cultivar variations of SSR in a morphologically uniform variety IR64 of a selfing crop came from its parental lines, which has immediate and commercial applications including test of hybrid seed purity, varietal fingerprinting, and curation and propagation of germplasm collections.
文摘Diversity array technology （DART^TM） was a genotyping tool characterized gel-independent and high throughput. The main purpose of present study is to validate DArT for rice （Oryza sativa L.）genotyping in a high throughput manner. Technically, the main objective was to generate a rice general purpose gene pool, and optimize this genomic tool in order to evaluate rice germplasm genetic diversity. To achieve this, firstly, a generalpurpose DArT array was developed. Ten representatives from 24 varieties were hybridized with the general-purpose array to determine the informativeness of the clones printed on the array. The informative 1 152 clones were re-arrayed on a slide and used to fingerprint 17 of 24 germplasms. Hybridizing targets prepared from the germplasm to be assayed to the DNA array gave DNA fingerprints of germplasms. Raw data were normalized and transformed into binary data, which were then analyzed by using NTSYSpc （Numerical taxonomy system for cluster and ordination analysis, v. 2.02j） software package. The graphically displayed dendrogram derived from the array experimental data was matched with simple sequence repeats genotyping outline and varieties＇ pedigree deviation of the different varieties. Considering DArT is a sequence-independent genotyping approach, it will be applied in studies of the genetic diversity and the gene mapping of diverse of organisms, especially for those crops with less-developed molecular markers.
