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In silico curation of QTL-rich clusters and candidate gene identification for plant height of bread wheat 被引量:1
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作者 Dengan Xu Chenfei Jia +12 位作者 Xinru Lyu Tingzhi Yang huimin qin Yalin Wang Qianlin Hao Wenxing Liu Xuehuan Dai Jianbin Zeng Hongsheng Zhang Xianchun Xia Zhonghu He Shuanghe Cao Wujun Ma 《The Crop Journal》 SCIE CSCD 2023年第5期1480-1490,共11页
Many genetic loci for wheat plant height(PH) have been reported, and 26 dwarfing genes have been catalogued. To identify major and stable genetic loci for PH, here we thoroughly summarized these functionally or geneti... Many genetic loci for wheat plant height(PH) have been reported, and 26 dwarfing genes have been catalogued. To identify major and stable genetic loci for PH, here we thoroughly summarized these functionally or genetic verified dwarfing loci from QTL linkage analysis and genome-wide association study published from 2003 to 2022. A total of 332 QTL, 270 GWAS loci and 83 genes for PH were integrated onto chromosomes according to their locations in the IWGSC RefSeq v2.1 and 65 QTL-rich clusters(QRC) were defined. Candidate genes in each QRC were predicted based on IWGSC Annotation v2.1 and the information on functional validation of homologous genes in other species. A total of 38 candidate genes were predicted for 65 QRC including three GA2ox genes in QRC-4B-IV, QRC-5A-VIII and QRC-6A-II(Rht24) as well as GA 20-oxidase 2(TaSD1-3A) in QRC-3A-IV. These outcomes lay concrete foundations for mapbased cloning of wheat dwarfing genes and application in breeding. 展开更多
关键词 QTL-rich clusters Plant height Semi-dwarfism Reduced height genes Candidate genes
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Metalloprotein-inspired supramolecular photodynamic nanodrugs by multicomponent coordination for deep penetration and enhanced biofilm eradication 被引量:1
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作者 Zhuo-Ran Yang Jingyi Xiong +7 位作者 Sirui Wei Kehan Du huimin qin Teng Ma Niannian Lv Xinyu Yu Hao Jiang Jintao Zhu 《Nano Research》 SCIE EI CSCD 2023年第5期7312-7322,共11页
Bacterial infections exacerbate the formation of bacterial biofilms,leading to resistance to traditional drugs,persistent infection,and even threatening patient’s life.Efficient antimicrobial materials against drug-r... Bacterial infections exacerbate the formation of bacterial biofilms,leading to resistance to traditional drugs,persistent infection,and even threatening patient’s life.Efficient antimicrobial materials against drug-resistant bacterial biofilms are highly desired.In this study,a photodynamic nanodrug with bacterial targeting was constructed by cooperative coordination of zinc ion with an antimicrobial peptide with hydrophobic tripeptides on the side chains and the photosensitizer chlorin e6.The supramolecular nanodrug with a uniform spherical structure possessed high photosensitizer loading capacity and enhanced photodynamic efficacy,which could deep penetrate and eradicate methicillin-resistant Staphylococcus aureus(MRSA)biofilms upon 655 nm laser irradiation.Furthermore,in vivo experiments verified the efficient elimination of MRSA biofilms on implanted catheters.This study provides a novel strategy to fabricate metalloprotein-inspired supramolecular photodynamic nanodrugs against drugresistant bacterial biofilms-associated infections in vivo. 展开更多
关键词 photodynamic therapy supramolecular assembly COORDINATION deep penetration biofilm eradication
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谷氨酸棒杆菌基因编辑的研究进展 被引量:4
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作者 杨娟娟 马晓雨 +5 位作者 王晓蕊 张朝晖 王珊 秦慧民 毛淑红 路福平 《生物工程学报》 CAS CSCD 北大核心 2020年第5期820-828,共9页
谷氨酸棒杆菌是生产氨基酸、有机酸等的重要菌株,广泛应用于食品、医药领域。利用基因编辑技术对谷氨酸棒杆菌进行基因功能研究,在提高目的产物产量、发现新的基因功能等方面有重要意义。近年来,基因编辑技术发展日新月异,从基于同源重... 谷氨酸棒杆菌是生产氨基酸、有机酸等的重要菌株,广泛应用于食品、医药领域。利用基因编辑技术对谷氨酸棒杆菌进行基因功能研究,在提高目的产物产量、发现新的基因功能等方面有重要意义。近年来,基因编辑技术发展日新月异,从基于同源重组的传统基因编辑技术到以人工核酸酶介导的基因编辑均在谷氨酸棒杆菌中得到合理应用。其中,CRISPR技术以其快速、简便、编辑效率高等优点成为现阶段研究者用于改造谷氨酸棒杆菌的主要技术,但是更为简单、高效的编辑手段依旧需要进一步研究开发,以获得优良菌株应用于工业生产中。 展开更多
关键词 谷氨酸棒杆菌 基因编辑 同源重组 CRISPR
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疏水性氨基酸的羟基化研究进展 被引量:5
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作者 孙登岳 程晓涛 +4 位作者 郭倩倩 许盼盼 朱张亮 秦慧民 路福平 《生物工程学报》 CAS CSCD 北大核心 2018年第7期1046-1056,共11页
羟基化氨基酸在生物技术和分子生物学中具有独特价值,具有抗真菌、抗菌、抗病毒和抗癌的特性。通过比较化学合成与生物催化合成羟基氨基酸的异同,选择具有高对映结构选择性的生物催化合成方法成为羟基氨基酸合成的首选。生物催化实现疏... 羟基化氨基酸在生物技术和分子生物学中具有独特价值,具有抗真菌、抗菌、抗病毒和抗癌的特性。通过比较化学合成与生物催化合成羟基氨基酸的异同,选择具有高对映结构选择性的生物催化合成方法成为羟基氨基酸合成的首选。生物催化实现疏水性氨基酸的羟基化和羟化酶紧密相关,而羟化酶又是单核非血红素Fe(Ⅱ)和α-酮戊二酸依赖型双加氧酶(Fe/αKGDs)的一种,Fe/αKGDs存在共性催化机制。因此,疏水性氨基酸在被催化的过程中,会利用关键中间体高价铁-超氧复合体(Fe(Ⅳ)=O)引起多种氧化转化,从而完成羟基化过程。文中就疏水性氨基酸的羟基化合成及功能应用,尤其是(2S,3R,4S)-4-羟基-异亮氨酸(4-HIL)和羟脯氨酸,进行了详细的阐述,探讨了Fe/αKGDs的共性催化反应机制,并对羟基氨基酸在基础研究和工业中的应用进行了综述。 展开更多
关键词 羟基化氨基酸 生物学功能 生物合成 Fe/αKGDs 催化机制
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ROS-initiated in-situ polymerization of diacetylene-containing lipidated peptide amphiphile in living cells
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作者 Niannian Lv Teng Ma +6 位作者 huimin qin Zhuo-Ran Yang Yanggui Wu Danqi Li Juan Tao Hao Jiang Jintao Zhu 《Science China Materials》 SCIE EI CAS CSCD 2022年第10期2861-2870,共10页
Recently,in-situ polymerization inside living cells has attracted much attention due to the efficient cellular internalization and elevated drug retention.However,the lack of tracking of the in-situ polymerization pro... Recently,in-situ polymerization inside living cells has attracted much attention due to the efficient cellular internalization and elevated drug retention.However,the lack of tracking of the in-situ polymerization process and the unclear effects of polymerization on cellular functions restrict its biomedical applications.Herein,we designed a Y-shaped diacetylene-containing lipidated peptide amphiphile(YDLPA1)with positive charges,which underwent in-situ polymerization initiated by reactive oxygen species in the intracellular microenvironment.In comparison,zwitterionic YDLPA2 and negatively charged Y-DLPA3 were polymerized in aqueous solution,but cannot polymerize in the intracellular microenvironment.The polymerized Y-DLPA1 with red fluorescence provides a platform to label cells for long-term tracking studies.This polymerization reaction induced tumor cell apoptosis,increased cell viscosity and decreased cell motility,which potentially inhibited tumor metastasis and served as a novel antitumor agent.This work provides a novel strategy to track in-situ polymerization process and modulate cell biofunctions. 展开更多
关键词 DIACETYLENE lipidated peptide amphiphile electrostatic interaction reactive oxygen species in-cellulo polymerization
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