US Centers for Disease Control and Prevention (CDC) estimates food-borne pathogenic <em>Salmonella</em> bacteria cause about 1.35 million infections, 26,500 hospitalizations, and 420 deaths in the U.S. eve...US Centers for Disease Control and Prevention (CDC) estimates food-borne pathogenic <em>Salmonella</em> bacteria cause about 1.35 million infections, 26,500 hospitalizations, and 420 deaths in the U.S. every year. Outbreaks of multidrug-resistant <em>Salmonella</em> Reading linked mainly to raw turkey products and alfalfa sprouts have accounted for human illness including mortality. Therefore, we downloaded and compared genome sequences of 897 <em>Salmonella</em> Reading isolated from 27 resources in 11 countries at 21 year-points from the National Center for Biotechnology Information database. Isolates were clustered into 10 clades which consisted of 3 major and 7 minor or single node clades. Although 3 major clades included both Europe and American isolates, one clade consisted of 605 North American isolates out of 614 isolates. Evolutionary distance is more related to the continent than the source of isolation. The host source, continent (North America and Europe) and phylogenetic clade were related to the prevalence of isolates encoding Antimicrobial Resistance Genes (ARGs). Prevalence of prophages was greater in bovine and swine isolates than poultry and human isolates and the least prevalence was found in human isolates. Between continents, the prevalence of phage was greater in North Ame- rican isolates than European. The diversity of virulence factors in swine isolates differed from poultry isolate while no difference was found among continents. In conclusion, evolutionary distance is related to isolation host source rather than the continent, and genome features were distinguished by host and cluster. Our genomic analysis implies that <em>Salmonella</em> Reading evolved independently to environments within its lineages.展开更多
Microbial fuel cell (MFC) is one of renewable biofuel production technology that directly converts biomass to electricity. Cellulosic biomass is particularly attractive renewable resources for its low cost and abundan...Microbial fuel cell (MFC) is one of renewable biofuel production technology that directly converts biomass to electricity. Cellulosic biomass is particularly attractive renewable resources for its low cost and abundance and neutral carbon balance. However, methanogenesis remains as a major factor limiting MFC performance. The current study reports that saponin addition at 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> w/v dose to anolyte in MFCs inhibited methanogenesis and improves power generation and cellulose fermentation. Mediator-less two chamber H-type MFCs were prepared using </span><span><span style="font-family:Verdana;">rumen fluid as anode inocula at 20</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> v/v of anolyte to convert finely ground pine tree (Avicel) at 2</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;">, w/v to electricity. Saponin was added to the anode of MFC at 0.005</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> or 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> v/v dosage for treatment. </span></span><span style="font-family:Verdana;">MFC power and current across an external resistor were measured daily for 10d. On d10, collected gases from anode compartment were measured for total gas volume and analyzed for gas composition on gas chromatography. Supplementation of saponin to MFC at 0.005</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> did not have any effects on electricity generation or biogas production and composition. Saponin at 0.05% dose reduced 10</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> of methane production and increased 40</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> of CO</span><sub><span style="font-family:Verdana;">2</span></sub><span style="font-family:Verdana;"> production and 6.4</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> of total gas production for 10d MFC operation. Voltage across resistor prior to treatment addition (d0) was 164.75 ± 9.07 mV. In control group, voltage across resistor did not change (P = 0.9153) with time course and mean was 167.8 ± 8.20 mV ranged from 157 to 174.5 mV during 10d operation. In 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin group, voltage across resistor increased (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) after d2 and mean was 187.3 ± 4.30 mV ranged between 161.5 and 204.0 mV and the 10d mean of voltage across resistor in 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin was greater (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) than in control group. 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin also had greater voltage across resistor at d5 (P = 0.0030) and d6 (P = 0.0246) than control. End point potential increased (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) in 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin after d2. 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin had greater (P < 0.05) end point potentials than control at d1, d4, d7, d10, and also 10d mean was greater (731.9 vs 606.5 mV;P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) in 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin. Power density increased (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) after d2 in 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin. 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin MFCs had greater (P < 0.05) power density than control at d5 and d6, and also a greater (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:Verdana;">.0001) overall mean of 10d operation. The current study provides strong background for potential use of saponin and saponin containing natural resources for methanogenesis inhibitor and cellulolysis enhancer in MFC and also cellulolysis reactors.展开更多
A yeast deletion library was screened based on NADH fluorescence using a 384-well plate assay to identify a yeast isolate lacking a previously identified cell surface oxidase exhibiting an oscillatory pattern with a p...A yeast deletion library was screened based on NADH fluorescence using a 384-well plate assay to identify a yeast isolate lacking a previously identified cell surface oxidase exhibiting an oscillatory pattern with a period length of 25 min and resistant to the ENOX1-specific inhibitor simalikalactone D (YNOX for yeast-specific ENOX = ENOX4). The cDNA was cloned from a yeast over expression library using NADH fluorescence analyzed by Fast Fourier transform and decomposition fits. The objective was to identify and sequence an ENOX homologue in Saccharomyces cerevisiae with a 25 min rather than a 24 min period length (YNOX). The finding identified YDR005C as the yeast ENOX protein with a temperature-independent 25 min period length and insensitive to inhibition by simalikalactone D. The encoded protein was expressed in bacteria and characterized. Gel slices corresponding to 55 kDa and 39 kDa His-tagged proteins exhibited 25 min oscillatory patterns not inhibited by 1 μM simalikalactone D for both NADH oxidation and reduced coenzyme Q10 oxidation as well as a protein disulfide-thiol interchange activity which alternated with the oxidative activities. Activities were phased by low-frequency electromagnetic fields but, in contrast, to yeast ENOX1, not by addition of melatonin. The assay in the presence of D2O shifted the length of the oscillatory period from 25 min to 32 min. The YDR005C deletion mutant cells lacked the ENOX4 clock output present in the wild type yeast.展开更多
文摘US Centers for Disease Control and Prevention (CDC) estimates food-borne pathogenic <em>Salmonella</em> bacteria cause about 1.35 million infections, 26,500 hospitalizations, and 420 deaths in the U.S. every year. Outbreaks of multidrug-resistant <em>Salmonella</em> Reading linked mainly to raw turkey products and alfalfa sprouts have accounted for human illness including mortality. Therefore, we downloaded and compared genome sequences of 897 <em>Salmonella</em> Reading isolated from 27 resources in 11 countries at 21 year-points from the National Center for Biotechnology Information database. Isolates were clustered into 10 clades which consisted of 3 major and 7 minor or single node clades. Although 3 major clades included both Europe and American isolates, one clade consisted of 605 North American isolates out of 614 isolates. Evolutionary distance is more related to the continent than the source of isolation. The host source, continent (North America and Europe) and phylogenetic clade were related to the prevalence of isolates encoding Antimicrobial Resistance Genes (ARGs). Prevalence of prophages was greater in bovine and swine isolates than poultry and human isolates and the least prevalence was found in human isolates. Between continents, the prevalence of phage was greater in North Ame- rican isolates than European. The diversity of virulence factors in swine isolates differed from poultry isolate while no difference was found among continents. In conclusion, evolutionary distance is related to isolation host source rather than the continent, and genome features were distinguished by host and cluster. Our genomic analysis implies that <em>Salmonella</em> Reading evolved independently to environments within its lineages.
文摘Microbial fuel cell (MFC) is one of renewable biofuel production technology that directly converts biomass to electricity. Cellulosic biomass is particularly attractive renewable resources for its low cost and abundance and neutral carbon balance. However, methanogenesis remains as a major factor limiting MFC performance. The current study reports that saponin addition at 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> w/v dose to anolyte in MFCs inhibited methanogenesis and improves power generation and cellulose fermentation. Mediator-less two chamber H-type MFCs were prepared using </span><span><span style="font-family:Verdana;">rumen fluid as anode inocula at 20</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> v/v of anolyte to convert finely ground pine tree (Avicel) at 2</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;">, w/v to electricity. Saponin was added to the anode of MFC at 0.005</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> or 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> v/v dosage for treatment. </span></span><span style="font-family:Verdana;">MFC power and current across an external resistor were measured daily for 10d. On d10, collected gases from anode compartment were measured for total gas volume and analyzed for gas composition on gas chromatography. Supplementation of saponin to MFC at 0.005</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> did not have any effects on electricity generation or biogas production and composition. Saponin at 0.05% dose reduced 10</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> of methane production and increased 40</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> of CO</span><sub><span style="font-family:Verdana;">2</span></sub><span style="font-family:Verdana;"> production and 6.4</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> of total gas production for 10d MFC operation. Voltage across resistor prior to treatment addition (d0) was 164.75 ± 9.07 mV. In control group, voltage across resistor did not change (P = 0.9153) with time course and mean was 167.8 ± 8.20 mV ranged from 157 to 174.5 mV during 10d operation. In 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin group, voltage across resistor increased (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) after d2 and mean was 187.3 ± 4.30 mV ranged between 161.5 and 204.0 mV and the 10d mean of voltage across resistor in 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin was greater (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) than in control group. 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin also had greater voltage across resistor at d5 (P = 0.0030) and d6 (P = 0.0246) than control. End point potential increased (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) in 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin after d2. 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin had greater (P < 0.05) end point potentials than control at d1, d4, d7, d10, and also 10d mean was greater (731.9 vs 606.5 mV;P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) in 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin. Power density increased (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:""><span style="font-family:Verdana;">.0001) after d2 in 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin. 0.05</span><span style="white-space:nowrap;font-family:Verdana;">%</span><span style="font-family:Verdana;"> Saponin MFCs had greater (P < 0.05) power density than control at d5 and d6, and also a greater (P <</span></span><span style="font-family:Verdana;"> 0</span><span style="font-family:Verdana;">.0001) overall mean of 10d operation. The current study provides strong background for potential use of saponin and saponin containing natural resources for methanogenesis inhibitor and cellulolysis enhancer in MFC and also cellulolysis reactors.
文摘A yeast deletion library was screened based on NADH fluorescence using a 384-well plate assay to identify a yeast isolate lacking a previously identified cell surface oxidase exhibiting an oscillatory pattern with a period length of 25 min and resistant to the ENOX1-specific inhibitor simalikalactone D (YNOX for yeast-specific ENOX = ENOX4). The cDNA was cloned from a yeast over expression library using NADH fluorescence analyzed by Fast Fourier transform and decomposition fits. The objective was to identify and sequence an ENOX homologue in Saccharomyces cerevisiae with a 25 min rather than a 24 min period length (YNOX). The finding identified YDR005C as the yeast ENOX protein with a temperature-independent 25 min period length and insensitive to inhibition by simalikalactone D. The encoded protein was expressed in bacteria and characterized. Gel slices corresponding to 55 kDa and 39 kDa His-tagged proteins exhibited 25 min oscillatory patterns not inhibited by 1 μM simalikalactone D for both NADH oxidation and reduced coenzyme Q10 oxidation as well as a protein disulfide-thiol interchange activity which alternated with the oxidative activities. Activities were phased by low-frequency electromagnetic fields but, in contrast, to yeast ENOX1, not by addition of melatonin. The assay in the presence of D2O shifted the length of the oscillatory period from 25 min to 32 min. The YDR005C deletion mutant cells lacked the ENOX4 clock output present in the wild type yeast.