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高粱单核苷酸多态性(SNP)标记开发研究初报 被引量:1
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作者 籍贵苏 吕芃 +6 位作者 杜瑞恒 刘国庆 侯升林 马雪 李素英 王金萍 赵秀萍 《华北农学报》 CSCD 北大核心 2018年第2期119-125,共7页
高粱在粮食安全、人类健康和生物能源的开发上具有非常重要的作用,其被认为是二倍体模式化作物和多倍体能源作物甘蔗和芒草类的参考植物,开发高粱多态性分子标记对促进分子遗传学发展及高粱分子标记辅助育种意义重大。以甜高粱与粒用高... 高粱在粮食安全、人类健康和生物能源的开发上具有非常重要的作用,其被认为是二倍体模式化作物和多倍体能源作物甘蔗和芒草类的参考植物,开发高粱多态性分子标记对促进分子遗传学发展及高粱分子标记辅助育种意义重大。以甜高粱与粒用高粱杂交的F2遗传群体作为研究材料,对其全基因组DNA进行酶切,然后用高通量测序法开发SLAF(Specific-locus amplified fragment sequencing)标签,并经过分析筛选多态性SNP标记。试验过程中测序的reads数达到43 528 021个,母本2 598 472个,父本3 134 524个,子代的reads数为205 083~454 258个,平均为290 732.5个。通过原始数据的评估、聚类和纠错开发的SLAF标签数,父母本分别为44 895,42 100个。测序深度分别为19.78和16.22,F2群体每个个体的SLAF标签为26 737~39 291个,平均为33 445.06个,测序深度2.24~3.72,平均为2.79。通过对聚类群中高深度片段的潜在基因型分析,得到了6 353个多态性SNP标记,其中5 829个标记成功分型,占多态性SNP标记的91.75%,剔除不适宜作图的标记,剩余有效的SNP标记2 246个,占有效标记百分比100%,F2个体的各样品完整度平均为94.99%。所以,对基因组DNA进行酶切和高通量测序,从庞大的reads中获得SLAF标签是得到全基因组SNP标记的有效途径。为高粱高密度图谱构建和QTL定位研究,以及分子标记辅助育种奠定了基础。 展开更多
关键词 高粱 SLAF标签 高通量测序 开发 SNP标记
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The Research on Identification of Resistance to Sorghum Aphid [Melanaphis Sacchari(Zehntner)] Employing Indoor Artificial Infestation Technique
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作者 Lv Peng Qi Yameng +5 位作者 Liu Guoqing Hou Shenglin Li Suying ji guisu Ma Xue Du Ruiheng 《Plant Diseases and Pests》 CAS 2013年第3期26-32,共7页
[ Objective] The paper was to establish a quick and effective indoor identification method of sorghum resistance to aphid uninfluenced by seasons. [ Method] Based on the indoor reproduction technique of aphids, the so... [ Objective] The paper was to establish a quick and effective indoor identification method of sorghum resistance to aphid uninfluenced by seasons. [ Method] Based on the indoor reproduction technique of aphids, the sorghum varieties with different resistant performances against aphids in fields were conducted inoculation test in the laboratory according to different seedling culture media, different survey periods of aphid quantity, different leaf ages for inoculation, different inoculation quantity of aphids and different aphid sizes. Three hundred sorghum materials were identified in both laboratory and field. [ Result ] The number of aphids per seedling on the fifth day after inoculation gave the best score of plant resistance to sorghum aphid by using the loam as the seedling culture media, and inoculating three different sizes of aphids in seedlings at two-leaf stage. Thus, the indoor identification technique of resistance to sorghum aphids was as follows : ( 1 ) sorghum seeds were sown in loam at room temperature of 22 - 26 ℃ and air humidity of 55% - 75% ; (2) three aphids with different sizes were inoculated in scedIings at two-leaf stage; (3) the number of aphids per seeding were surveyed on the fifth day after inoculation; (4) plant resistance to sorghum aphid was evalu- ated according to number of aphids per seedling on the fifth day after inoculation. The resistant grade of sorghum variety was evaluated according to distribution of aphid quantity per seedling in a 100-seedlings population. The resistance materials identified by indoor method at seedling stage had consistent performance with fidd identification. [ Conclusion] The method could be used for resistance identification of sorghum varieties and hybrids, and accurate identification and selectlon of individual resistance of hybrid offspring, which could improve selection efficiency of individual resistant plant against aphids in hybrid offspring and identification accuracy of individual resistant plant among molecular marker population. 展开更多
关键词 SORGHUM Sorghum aphid Identification of resistance Seedling stage
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