Objective: Small intestinal tumors(SBTs) were difficult to be discovered before surgery. The emergence of double-balloon enteroscopy(DBE) and capsule endoscopy(CE) have greatly improved the evaluation of SBTs and faci...Objective: Small intestinal tumors(SBTs) were difficult to be discovered before surgery. The emergence of double-balloon enteroscopy(DBE) and capsule endoscopy(CE) have greatly improved the evaluation of SBTs and facilitated a more precise preoperative diagnosis. Yet little data exist in China regarding clinical efficacy of DBE and clinical characteristics of SBTs. The aim of our study was to clarify the clinical characteristics of SBTs and analyze the efficacy of DBE examination in the detection and diagnosis of SBTs. Methods: We retrospectively reviewed patients who underwent DBE in our hospital between June 2011 and July 2014. Patients who were diagnosed with SBTs by DBE were included in the study. Results: A total of 316 patients underwent 321 DBE procedures, 80(25.3%) of whom were suspected to have an SBT. And 59 of the 80 subjects were diagnosed with SBT finally. The majorities(59.3%, 35/59) of the patients diagnosed with SBT were males, whose average age was 61.8 years(SD ±11.0 years). DBE were frequently performed in patients with obscure gastrointestinal bleeding(66.1%), abdominal pain(16.9%). The common SBTs identified were: gastrointestinal stromal tumors(GISTs)(24/59, 40.7%), adenocarcinomas(13/59, 22.0%), lymphomas(6/59, 10.2%) and benign polyps(6/59, 10.2%). Jejunum had the highest detection rate(47.5%, 29/61). During the follow-up period(3 months to 3 years), 14 patients were submitted to chemotherapy and two patients died of tumor. Conclusion: The most high frequency type and location of SBTs detected in our hospital were different from western countries. DBE is a valuable and safe examination for SBTs.展开更多
Chromatin accessibility remodeling driven by pioneer factors is critical for the development of early embryos.Current studies have illustrated several pioneer factors as being important for agricultural animals,but wh...Chromatin accessibility remodeling driven by pioneer factors is critical for the development of early embryos.Current studies have illustrated several pioneer factors as being important for agricultural animals,but what are the pioneer factors and how the pioneer factors remodel the chromatin accessibility in porcine early embryos is not clear.By employing low-input DNase-seq(liDNase-seq),we profiled the landscapes of chromatin accessibility in porcine early embryos and uncovered a unique chromatin accessibility reprogramming pattern during porcine preimplantation development.Our data revealed that KLF4 played critical roles in remodeling chromatin accessibility in porcine early embryos.Knocking down of KLF4 led to the reduction of chromatin accessibility in early embryos,whereas KLF4 overexpression promoted the chromatin openness in porcine blastocysts.Furthermore,KLF4 deficiency resulted in mitochondrial dysfunction and developmental failure of porcine embryos.In addition,we found that overexpression of KLF4 in blastocysts promoted lipid droplet accumulation,whereas knockdown of KLF4 disrupted this process.Taken together,our study revealed the chromatin accessibility dynamics and identified KLF4 as a key regulator in chromatin accessibility and cellular metabolism during porcine preimplantation embryo development.展开更多
In the physiological environment, nanoparticles(NPs) interact with proteins to form a protein-rich layer on the surface which is called "protein corona". Understanding and analyzing the formation process of ...In the physiological environment, nanoparticles(NPs) interact with proteins to form a protein-rich layer on the surface which is called "protein corona". Understanding and analyzing the formation process of protein corona and protein corona-nanoparticles is of great significance for biological related nano research. Many separation techniques have been used to analyze the composition of protein corona, but in situ analysis of protein corona is still absent. With the development of detection technology, sum frequency generation(SFG) is an effective instrument to analyze the surface protein structure and dynamic changes of protein corona in situ. In this work the molecular mechanism and surface structure effect of the interaction between nanoparticles with surface protein corona(S-NPP) and phospholipid membrane were studied. When S-NPP interacts with phospholipid membrane, the bond affinity network formed by the binding water can stabilize S-NPP around the lipid bilayer. In this process, S-NPP can be found wrapped in the hydration shell. This ultimately leads to a more moderate interaction between particles and phospholipid membrane.展开更多
Neural stem progenitor cell(NSPC)transplantation has been regarded as a promising therapeutic method for spinal cord injury(SCI)repair.However,different NSPCs may have different therapeutic effects,and it is therefore...Neural stem progenitor cell(NSPC)transplantation has been regarded as a promising therapeutic method for spinal cord injury(SCI)repair.However,different NSPCs may have different therapeutic effects,and it is therefore important to identify the optimal NSPC type.In our study,we compared the transcriptomes of human fetal brain-derived NSPCs(BNSPCs),spinal cord-derived NSPCs(SCNSPCs)and H9 embryonic stem-cell derived NSPCs(H9-NSPCs)in vitro and subsequently we transplanted each NSPC type on a collagen scaffold into a T8-9 complete SCI rat model in vivo.In vitro data showed that SCNSPCs had more highly expressed genes involved in nerve-related functions than the other two cell types.In vivo,compared with BNSPCs and H9-NSPCs,SCNSPCs exhibited the best therapeutic effects;in fact,SCNSPCs facilitated electrophysiological and hindlimb functional recovery.This study demonstrates that SCNSPCs may be an appropriate candidate cell type for SCI repair,which is of great clinical significance.展开更多
Soybean was domesticated in China and has become one of the most important oilseed crops. Due to bottlenecks in their introduction and dissemination, soybeans from different geographic areas exhibit extensive genetic ...Soybean was domesticated in China and has become one of the most important oilseed crops. Due to bottlenecks in their introduction and dissemination, soybeans from different geographic areas exhibit extensive genetic diversity. Asia is the largest soybean market; therefore, a high-quality soybean reference genome from this area is critical for soybean research and breeding.Here, we report the de novo assembly and sequence analysis of a Chinese soybean genome for "Zhonghuang 13" by a combination of SMRT, Hi-C and optical mapping data. The assembled genome size is 1.025 Gb with a contig N50 of 3.46 Mb and a scaffold N50 of 51.87 Mb. Comparisons between this genome and the previously reported reference genome(cv. Williams82) uncovered more than 250,000 structure variations. A total of 52,051 protein coding genes and 36,429 transposable elements were annotated for this genome, and a gene co-expression network including 39,967 genes was also established. This high quality Chinese soybean genome and its sequence analysis will provide valuable information for soybean improvement in the future.展开更多
Neural stem cells(NSCs)in the spinal cord hold great potential for repair after spinal cord injury(SCI).The ependyma in the central canal(CC)region has been considered as the NSCs source in the spinal cord.However,the...Neural stem cells(NSCs)in the spinal cord hold great potential for repair after spinal cord injury(SCI).The ependyma in the central canal(CC)region has been considered as the NSCs source in the spinal cord.However,the ependyma function as NSCs after SCI is still under debate.We used Nestin as a marker to isolate potential NSCs and their immediate progeny,and characterized the cells before and after SCI by single-cell RNA-sequencing(scRNA-seq).We identified two subgroups of NSCs:the subgroup located within the CC cannot prime to active NSCs after SCI,while the subgroup located outside the CC were activated and exhibited the active NSCs properties after SCI.We demonstrated the comprehensive dynamic transcriptome of NSCs from quiescent to active NSCs after SCI.This study reveals that Nestin+cells outside CC were NSCs that activated upon SCI and may thus serve as endogenous NSCs for regenerative treatment of SCI in the future.展开更多
Dear Editor,Our auditory organ,the cochlea,resides in the ventral portion of the inner ear,and its sensory epithelium,the organ of Corti,contains hair cells(HCs)and supporting cells(SCs),which are both descendants of ...Dear Editor,Our auditory organ,the cochlea,resides in the ventral portion of the inner ear,and its sensory epithelium,the organ of Corti,contains hair cells(HCs)and supporting cells(SCs),which are both descendants of the same progenitors.HCs are prone to damage by multiple ototoxic factors,and how to regenerate damaged HCs using key genes involving cochlear development is of importance[1,2].Cochlear progenitor cells express Sox2 and prolif-erate before embryonic day 12.5(E12.5)in the mouse but become quiescent in an apical-to-basal gradient between E12.5 and E14.5[3].展开更多
Background:Individualization using different volumes of polyethylene glycol is widely regarded as the optimal solution for bowel preparation,while the patient-directed regimen we propose may serve as a reliable indivi...Background:Individualization using different volumes of polyethylene glycol is widely regarded as the optimal solution for bowel preparation,while the patient-directed regimen we propose may serve as a reliable individual solution.This study aimed to assess the efficacy,safety,and satisfaction of bowel preparation with a patient-directed regimen.Methods:Patients in the fixed-volume group ingested the same amount of PEG,while those in patient-directed group ingested different amount according to stool consistency or stool water content.Results:After filtering by exclusion criteria,428 individuals in the fixed-volume group and 103 in the patient-directed group were successfully enrolled and analyzed.Eighty-three(80.6%)individuals in the patient-directed group had a reduced polyethylene glycol volume.There was no significant difference in the bowel preparation efficacy between the two groups(90.0%vs.90.3%,χ^(2)=0.01;p=0.918).Patients in the patient-directed group complained of fewer adverse effects(53.0%vs.36.9%,χ^(2)=8.655;p=0.003),especially vomiting(13.6%vs.1.0%,χ^(2)=13.304;p<0.001).Regarding comfort during bowel preparation,the degree of comfort was not significantly different between groups.Furthermore,the willingness rate for further colonoscopy in the patient-directed group was significantly higher than that in the fixed-volume group(90.3%vs.77.1%,χ^(2)=8.912;p<0.05).Multivariable logistic regression analysis showed that the body mass index served as an independent factor impacting quality of bowel preparation with the patient-directed regimen(OR 1.16,95%CI 1.00–1.34;p=0.043).Conclusions:Without decreasing the bowel preparation efficacy,the patient-directed regimen increased the safety and satisfaction of bowel preparation and is expected to be a regular and individual solution for bowel preparation.Individuals with a lower body mass index are more likely to undertake this new regimen.展开更多
文摘Objective: Small intestinal tumors(SBTs) were difficult to be discovered before surgery. The emergence of double-balloon enteroscopy(DBE) and capsule endoscopy(CE) have greatly improved the evaluation of SBTs and facilitated a more precise preoperative diagnosis. Yet little data exist in China regarding clinical efficacy of DBE and clinical characteristics of SBTs. The aim of our study was to clarify the clinical characteristics of SBTs and analyze the efficacy of DBE examination in the detection and diagnosis of SBTs. Methods: We retrospectively reviewed patients who underwent DBE in our hospital between June 2011 and July 2014. Patients who were diagnosed with SBTs by DBE were included in the study. Results: A total of 316 patients underwent 321 DBE procedures, 80(25.3%) of whom were suspected to have an SBT. And 59 of the 80 subjects were diagnosed with SBT finally. The majorities(59.3%, 35/59) of the patients diagnosed with SBT were males, whose average age was 61.8 years(SD ±11.0 years). DBE were frequently performed in patients with obscure gastrointestinal bleeding(66.1%), abdominal pain(16.9%). The common SBTs identified were: gastrointestinal stromal tumors(GISTs)(24/59, 40.7%), adenocarcinomas(13/59, 22.0%), lymphomas(6/59, 10.2%) and benign polyps(6/59, 10.2%). Jejunum had the highest detection rate(47.5%, 29/61). During the follow-up period(3 months to 3 years), 14 patients were submitted to chemotherapy and two patients died of tumor. Conclusion: The most high frequency type and location of SBTs detected in our hospital were different from western countries. DBE is a valuable and safe examination for SBTs.
基金This work was supported by the National Natural Science Foundation of China(31902161)the National Key Research and Development Program of China(2022YFD1302201,2018YFA0107001)+3 种基金Strategic Priority Research Program of Chinese Academy of Sciences(XDA24020203)Key Research and Development Program of Hubei Province(2021BBA221)Major Project of Hubei Hongshan Laboratory(2021hszd003)Foundation of Key Laboratory of Animal Genetics,Breeding and Reproduction in the Plateau Mountainous Region,Ministry of Education,Guizhou University(QJHKY[2022]373).
文摘Chromatin accessibility remodeling driven by pioneer factors is critical for the development of early embryos.Current studies have illustrated several pioneer factors as being important for agricultural animals,but what are the pioneer factors and how the pioneer factors remodel the chromatin accessibility in porcine early embryos is not clear.By employing low-input DNase-seq(liDNase-seq),we profiled the landscapes of chromatin accessibility in porcine early embryos and uncovered a unique chromatin accessibility reprogramming pattern during porcine preimplantation development.Our data revealed that KLF4 played critical roles in remodeling chromatin accessibility in porcine early embryos.Knocking down of KLF4 led to the reduction of chromatin accessibility in early embryos,whereas KLF4 overexpression promoted the chromatin openness in porcine blastocysts.Furthermore,KLF4 deficiency resulted in mitochondrial dysfunction and developmental failure of porcine embryos.In addition,we found that overexpression of KLF4 in blastocysts promoted lipid droplet accumulation,whereas knockdown of KLF4 disrupted this process.Taken together,our study revealed the chromatin accessibility dynamics and identified KLF4 as a key regulator in chromatin accessibility and cellular metabolism during porcine preimplantation embryo development.
基金the Southeast University and Nanjing Medical University Cooperation ProjectScene Ray Co., Ltd. for the financial supportfounded by the National Key Reserch and Development Program of China (No.2017YFA0205304)。
文摘In the physiological environment, nanoparticles(NPs) interact with proteins to form a protein-rich layer on the surface which is called "protein corona". Understanding and analyzing the formation process of protein corona and protein corona-nanoparticles is of great significance for biological related nano research. Many separation techniques have been used to analyze the composition of protein corona, but in situ analysis of protein corona is still absent. With the development of detection technology, sum frequency generation(SFG) is an effective instrument to analyze the surface protein structure and dynamic changes of protein corona in situ. In this work the molecular mechanism and surface structure effect of the interaction between nanoparticles with surface protein corona(S-NPP) and phospholipid membrane were studied. When S-NPP interacts with phospholipid membrane, the bond affinity network formed by the binding water can stabilize S-NPP around the lipid bilayer. In this process, S-NPP can be found wrapped in the hydration shell. This ultimately leads to a more moderate interaction between particles and phospholipid membrane.
基金This work was supported by grants from the National Natural Science Foundation of China(No.81891002,No.32071338)the Strategic Priority Research Program of the Chinese Academy of Sciences(XDA16040702,XDA16040704)+1 种基金National Key R&D Program of China(2017YFA0104701,2017YFA0104704)CAS Project for Young Scientists in Basic Research(YSRB073).
文摘Neural stem progenitor cell(NSPC)transplantation has been regarded as a promising therapeutic method for spinal cord injury(SCI)repair.However,different NSPCs may have different therapeutic effects,and it is therefore important to identify the optimal NSPC type.In our study,we compared the transcriptomes of human fetal brain-derived NSPCs(BNSPCs),spinal cord-derived NSPCs(SCNSPCs)and H9 embryonic stem-cell derived NSPCs(H9-NSPCs)in vitro and subsequently we transplanted each NSPC type on a collagen scaffold into a T8-9 complete SCI rat model in vivo.In vitro data showed that SCNSPCs had more highly expressed genes involved in nerve-related functions than the other two cell types.In vivo,compared with BNSPCs and H9-NSPCs,SCNSPCs exhibited the best therapeutic effects;in fact,SCNSPCs facilitated electrophysiological and hindlimb functional recovery.This study demonstrates that SCNSPCs may be an appropriate candidate cell type for SCI repair,which is of great clinical significance.
基金supported by the National Natural Science Foundation of China (91531304, 31525018, 31370266, and 31788103)the “Strategic Priority Research Program” of the Chinese Academy of Sciences (XDA08000000)the State Key Laboratory of Plant Cell and Chromosome Engineering (PCCE-KF-2017-03)
文摘Soybean was domesticated in China and has become one of the most important oilseed crops. Due to bottlenecks in their introduction and dissemination, soybeans from different geographic areas exhibit extensive genetic diversity. Asia is the largest soybean market; therefore, a high-quality soybean reference genome from this area is critical for soybean research and breeding.Here, we report the de novo assembly and sequence analysis of a Chinese soybean genome for "Zhonghuang 13" by a combination of SMRT, Hi-C and optical mapping data. The assembled genome size is 1.025 Gb with a contig N50 of 3.46 Mb and a scaffold N50 of 51.87 Mb. Comparisons between this genome and the previously reported reference genome(cv. Williams82) uncovered more than 250,000 structure variations. A total of 52,051 protein coding genes and 36,429 transposable elements were annotated for this genome, and a gene co-expression network including 39,967 genes was also established. This high quality Chinese soybean genome and its sequence analysis will provide valuable information for soybean improvement in the future.
基金the National Natural Science Foundation of China(81891002 and 81891001)the Strategic Priority Research Program of the Chinese Academy of Sciences(XDA16040700)+1 种基金the National Key Research and Development Program of China(2017YFA0104701,2017YFA0104704 and 2016YFC1101501)Jiangsu Key Research and Development Program(BE2018664).
文摘Neural stem cells(NSCs)in the spinal cord hold great potential for repair after spinal cord injury(SCI).The ependyma in the central canal(CC)region has been considered as the NSCs source in the spinal cord.However,the ependyma function as NSCs after SCI is still under debate.We used Nestin as a marker to isolate potential NSCs and their immediate progeny,and characterized the cells before and after SCI by single-cell RNA-sequencing(scRNA-seq).We identified two subgroups of NSCs:the subgroup located within the CC cannot prime to active NSCs after SCI,while the subgroup located outside the CC were activated and exhibited the active NSCs properties after SCI.We demonstrated the comprehensive dynamic transcriptome of NSCs from quiescent to active NSCs after SCI.This study reveals that Nestin+cells outside CC were NSCs that activated upon SCI and may thus serve as endogenous NSCs for regenerative treatment of SCI in the future.
基金the State Key Laboratory of Molecular Developmental Biology(2019-MDB-KF-12)the National Key R&D Program of China(2017YFA0103901)+3 种基金the Strategic Priority Research Program of the Chinese Academy of Science(XDB32060100)the National Natural Science Foundation of China(81771012)a Shanghai Municipal Science and Technology Major Project(2018SHZDZX05)the Innovative Research Team of High-Level Local Universities in Shanghai(SSMU-ZLCX20180601).
文摘Dear Editor,Our auditory organ,the cochlea,resides in the ventral portion of the inner ear,and its sensory epithelium,the organ of Corti,contains hair cells(HCs)and supporting cells(SCs),which are both descendants of the same progenitors.HCs are prone to damage by multiple ototoxic factors,and how to regenerate damaged HCs using key genes involving cochlear development is of importance[1,2].Cochlear progenitor cells express Sox2 and prolif-erate before embryonic day 12.5(E12.5)in the mouse but become quiescent in an apical-to-basal gradient between E12.5 and E14.5[3].
基金supported from the National Natural Science Foundation of China(Grants No.82000521 and 82102797).
文摘Background:Individualization using different volumes of polyethylene glycol is widely regarded as the optimal solution for bowel preparation,while the patient-directed regimen we propose may serve as a reliable individual solution.This study aimed to assess the efficacy,safety,and satisfaction of bowel preparation with a patient-directed regimen.Methods:Patients in the fixed-volume group ingested the same amount of PEG,while those in patient-directed group ingested different amount according to stool consistency or stool water content.Results:After filtering by exclusion criteria,428 individuals in the fixed-volume group and 103 in the patient-directed group were successfully enrolled and analyzed.Eighty-three(80.6%)individuals in the patient-directed group had a reduced polyethylene glycol volume.There was no significant difference in the bowel preparation efficacy between the two groups(90.0%vs.90.3%,χ^(2)=0.01;p=0.918).Patients in the patient-directed group complained of fewer adverse effects(53.0%vs.36.9%,χ^(2)=8.655;p=0.003),especially vomiting(13.6%vs.1.0%,χ^(2)=13.304;p<0.001).Regarding comfort during bowel preparation,the degree of comfort was not significantly different between groups.Furthermore,the willingness rate for further colonoscopy in the patient-directed group was significantly higher than that in the fixed-volume group(90.3%vs.77.1%,χ^(2)=8.912;p<0.05).Multivariable logistic regression analysis showed that the body mass index served as an independent factor impacting quality of bowel preparation with the patient-directed regimen(OR 1.16,95%CI 1.00–1.34;p=0.043).Conclusions:Without decreasing the bowel preparation efficacy,the patient-directed regimen increased the safety and satisfaction of bowel preparation and is expected to be a regular and individual solution for bowel preparation.Individuals with a lower body mass index are more likely to undertake this new regimen.