Many fungi are pathogenic on plants and cause significant damage in agriculture and forestry.They are also part of the natural ecosystem and may play a role in regulating plant numbers/density.Morphological identifica...Many fungi are pathogenic on plants and cause significant damage in agriculture and forestry.They are also part of the natural ecosystem and may play a role in regulating plant numbers/density.Morphological identification and analysis of plant pathogenic fungi,while important,is often hampered by the scarcity of discriminatory taxonomic characters and the endophytic or inconspicuous nature of these fungi.Molecular(DNA sequence)data for plant pathogenic fungi have emerged as key information for diagnostic and classification studies,although hampered in part by non-standard laboratory practices and analytical methods.To facilitate current and future research,this study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota,Basidiomycota,Mucormycotina(Fungi),and Oomycota,using recent molecular data,up-to-date names,and the latest taxonomic insights.Lineagespecific laboratory protocols together with advice on their application,as well as general observations,are also provided.We hope to maintain updated backbone trees of these fungal lineages over time and to publish them jointly as new data emerge.Researchers of plant pathogenic fungi not covered by the present study are invited to join this future effort.Bipolaris,Botryosphaeriaceae,Botryosphaeria,Botrytis,Choanephora,Colletotrichum,Curvularia,Diaporthe,Diplodia,Dothiorella,Fusarium,Gilbertella,Lasiodiplodia,Mucor,Neofusicoccum,Pestalotiopsis,Phyllosticta,Phytophthora,Puccinia,Pyrenophora,Pythium,Rhizopus,Stagonosporopsis,Ustilago and Verticillium are dealt with in this paper.展开更多
Fungi are an understudied,biotechnologically valuable group of organisms.Due to the immense range of habitats that fungi inhabit,and the consequent need to compete against a diverse array of other fungi,bacteria,and a...Fungi are an understudied,biotechnologically valuable group of organisms.Due to the immense range of habitats that fungi inhabit,and the consequent need to compete against a diverse array of other fungi,bacteria,and animals,fungi have developed numerous survival mechanisms.The unique attributes of fungi thus herald great promise for their application in biotechnology and industry.Moreover,fungi can be grown with relative ease,making production at scale viable.The search for fungal biodiversity,and the construction of a living fungi collection,both have incredible economic potential in locating organisms with novel industrial uses that will lead to novel products.This manuscript reviews fifty ways in which fungi can potentially be utilized as biotechnology.We provide notes and examples for each potential exploitation and give examples from our own work and the work of other notable researchers.We also provide a flow chart that can be used to convince funding bodies of the importance of fungi for biotechnological research and as potential products.Fungi have provided the world with penicillin,lovastatin,and other globally significant medicines,and they remain an untapped resource with enormous industrial potential.展开更多
Plant pathogenic fungi are a large and diverse assemblage of eukaryotes with substantial impacts on natural ecosystems and human endeavours.These taxa often have complex and poorly understood life cycles,lack observab...Plant pathogenic fungi are a large and diverse assemblage of eukaryotes with substantial impacts on natural ecosystems and human endeavours.These taxa often have complex and poorly understood life cycles,lack observable,discriminatory morphological characters,and may not be amenable to in vitro culturing.As a result,species identification is frequently difficult.Molecular(DNA sequence)data have emerged as crucial information for the taxonomic identification of plant pathogenic fungi,with the nuclear ribosomal internal transcribed spacer(ITS)region being the most popular marker.However,international nucleotide sequence databases are accumulating numerous sequences of compromised or low-resolution taxonomic annotations and substandard technical quality,making their use in the molecular identification of plant pathogenic fungi problematic.Here we report on a concerted effort to identify high-quality reference sequences for various plant pathogenic fungi and to re-annotate incorrectly or insufficiently annotated public ITS sequences from these fungal lineages.A third objective was to enrich the sequences with geographical and ecological metadata.The results-a total of 31,954 changes-are incorporated in and made available through the UNITE database for molecular identification of fungi(http://unite.ut.ee),including standalone FASTA files of sequence data for local BLAST searches,use in the next-generation sequencing analysis platforms QIIME and mothur,and related applications.The present initiative is just a beginning to cover the wide spectrum of plant pathogenic fungi,and we invite all researchers with pertinent expertise to join the annotation effort.展开更多
Grapevines(Vitis vinifera)are colonized by ubiquitous microorganisms known as endophytes,which may have advantageous or neutral effects without causing disease symptoms.Certain endophytes are uncultivable,so culture-...Grapevines(Vitis vinifera)are colonized by ubiquitous microorganisms known as endophytes,which may have advantageous or neutral effects without causing disease symptoms.Certain endophytes are uncultivable,so culture-independent approaches such as next generation sequencing(NGS)can help for a better understanding of their ecology and distribution.To date,there are no studies which directly link NGS results with taxa derived from a culturing approach,integrating morphological and multi-gene phylogenetic analysis of endophytes.In this study,a culture-dependent and high-resolution culture-independent approach(next generation sequencing)were used to identify endophytes in grapevine stems.In the culture-dependent approach,a total of 94 isolates were recovered from 84 of 144 healthy grapevine stem fragments(colonization rate=58.3%).The study is unique as we used subsets of combined multi-gene regions to identify the endophytes to species level.Based on each multi-gene phylogenetic analysis,28 species belong to 19 genera(Acremonium,Alternaria,Arthrinium,Ascorhizoctonia,Aspergillus,Aureobasidium,Bipolaris,Botryosphaeria,Botrytis,Chaetomium,Cladosporium,Curvularia,Hypoxylon,Lasiodiplodia,Mycosphaerella,Nigrospora,Penicillium,Phoma,Scopulariopsis)were identified.A higher number of culturable fungi were obtained from 13 year-old vines,followed by eight and three yearold vines.In the culture-independent approach,a fungal richness of 59 operational taxonomic units(OTU)was detected,being highest in 13 year-old grapevines,followed by eight and three years.Even though the cultivation approach detected lower fungal richness,the results related to stem are consistent for fungal community composition and richness.Comparison of the fungal taxa identified by the two approaches resulted in an overlap of 53%of the fungal genera.Due to interspecific variability of the sequences from NGS,in many cases the OTUs(even with the highly abundant ones)were only assignable to order,family or genus level.Incorporating multi-gene phylogenies we successfully identified many of the NGS derived OTUs with poor taxonomic information in reference databases to the genus or species levels.Hence,this study signifies the importance of applying both culture-dependent and culture-independent approaches to study the fungal endophytic community composition in Vitis vinifera.This principle could also be applied to other host species and ecosystem level studies.展开更多
This is a continuity of a series of taxonomic and phylogenetic papers on the fungi where materials were collected from many countries,examined and described.In addition to extensive morphological descriptions and appr...This is a continuity of a series of taxonomic and phylogenetic papers on the fungi where materials were collected from many countries,examined and described.In addition to extensive morphological descriptions and appropriate asexual and sexual connections,DNA sequence data are also analysed from concatenated datasets to infer phylogenetic relationships and substantiate systematic positions of taxa within appropriate ranks.Wherever new species or combinations are proposed,we apply an integrative approach using morphological and molecular data as well as ecological features wherever applicable.Notes on 112 fungal taxa are compiled in this paper including Biatriosporaceae and Roussoellaceae,Didysimulans gen.nov.,81 new species,18 new host records and new country records,five reference specimens,two new combinations,and three sexual and asexual morph reports.The new species are Amanita cornelii,A.emodotrygon,Angustimassarina alni,A.arezzoensis,A.italica,A.lonicerae,A.premilcurensis,Ascochyta italica,A.rosae,Austroboletus appendiculatus,Barriopsis thailandica,Berkleasmium ariense,Calophoma petasitis,Camarosporium laburnicola,C.moricola,C.grisea,C.ossea,C.paraincrustata,Colletotrichum sambucicola,Coprinopsis cerkezii,Cytospora gelida,Dacrymyces chiangraiensis,Didysimulans italica,D.mezzanensis,Entodesmium italica,Entoloma magnum,Evlachovaea indica,Exophiala italica,Favolus gracilisporus,Femsjonia monospora,Fomitopsis flabellata,F.roseoalba,Gongronella brasiliensis,Helvella crispoides,Hermatomyces chiangmaiensis,H.chromolaenae,Hysterium centramurum,Inflatispora caryotae,Inocybe brunneosquamulosa,I.luteobrunnea,I.rubrobrunnea,Keissleriella cirsii,Lepiota cylindrocystidia,L.flavocarpa,L.maerimensis,Lophiotrema guttulata,Marasmius luculentus,Morenoina calamicola,Moelleriella thanathonensis,Mucor stercorarius,Myrmecridium fluviae,Myrothecium septentrionale,Neosetophoma garethjonesii,Nigrograna cangshanensis,Nodulosphaeria guttulatum,N.multiseptata,N.sambuci,Panus subfasciatus,Paraleptosphaeria padi,Paraphaeosphaeria viciae,Parathyridaria robiniae,Penicillium punicae,Phaeosphaeria calamicola,Phaeosphaeriopsis yuccae,Pleurophoma italica,Polyporus brevibasidiosus,P.koreanus,P.orientivarius,P.parvovarius,P.subdictyopus,P.ulleungus,Pseudoasteromassaria spadicea,Rosellinia mearnsii,Rubroboletus demonensis,Russula yanheensis,Sigarispora muriformis,Sillia italica,Stagonosporopsis ailanthicola,Strobilomyces longistipitatus,Subplenodomus galicola and Wolfiporia pseudococos.The new combinations are Melanomma populina and Rubroboletus eastwoodiae.The reference specimens are Cookeina tricholoma,Gnomoniopsis sanguisorbae,Helvella costifera,Polythrincium trifolii and Russula virescens.The new host records and country records are Ascochyta medicaginicola,Boletellus emodensis,Cyptotrama asprata,Cytospora ceratosperma,Favolaschia auriscalpium,F.manipularis,Hysterobrevium mori,Lentinus sajor-caju,L.squarrosulus,L.velutinus,Leucocoprinus cretaceus,Lophiotrema vagabundum,Nothophoma quercina,Platystomum rosae,Pseudodidymosphaeria phlei,Tremella fuciformis,Truncatella spartii and Vaginatispora appendiculata and three sexual and asexual morphs are Aposphaeria corallinolutea, Dothiorabuxi and Hypocrella calendulina.展开更多
This article is the 14th in the Fungal Diversity Notes series,wherein we report 98 taxa distributed in two phyla,seven classes,26 orders and 50 families which are described and illustrated.Taxa in this study were coll...This article is the 14th in the Fungal Diversity Notes series,wherein we report 98 taxa distributed in two phyla,seven classes,26 orders and 50 families which are described and illustrated.Taxa in this study were collected from Australia,Brazil,Burkina Faso,Chile,China,Cyprus,Egypt,France,French Guiana,India,Indonesia,Italy,Laos,Mexico,Russia,Sri Lanka,Thailand,and Vietnam.There are 59 new taxa,39 new hosts and new geographical distributions with one new combination.The 59 new species comprise Angustimassarina kunmingense,Asterina lopi,Asterina brigadeirensis,Bartalinia bidenticola,Bartalinia caryotae,Buellia pruinocalcarea,Coltricia insularis,Colletotrichum fexuosum,Colletotrichum thasutense,Coniochaeta caraganae,Coniothyrium yuccicola,Dematipyriforma aquatic,Dematipyriforma globispora,Dematipyriforma nilotica,Distoseptispora bambusicola,Fulvifomes jawadhuvensis,Fulvifomes malaiyanurensis,Fulvifomes thiruvannamalaiensis,Fusarium purpurea,Gerronema atrovirens,Gerronema favum,Gerronema keralense,Gerronema kuruvense,Grammothele taiwanensis,Hongkongmyces changchunensis,Hypoxylon inaequale,Kirschsteiniothelia acutisporum,Kirschsteiniothelia crustaceum,Kirschsteiniothelia extensum,Kirschsteiniothelia septemseptatum,Kirschsteiniothelia spatiosum,Lecanora immersocalcarea,Lepiota subthailandica,Lindgomyces guizhouensis,Marthe asmius pallidoaurantiacus,Marasmius tangerinus,Neovaginatispora mangiferae,Pararamichloridium aquisubtropicum,Pestalotiopsis piraubensis,Phacidium chinaum,Phaeoisaria goiasensis,Phaeoseptum thailandicum,Pleurothecium aquisubtropicum,Pseudocercospora vernoniae,Pyrenophora verruculosa,Rhachomyces cruralis,Rhachomyces hyperommae,Rhachomyces magrinii,Rhachomyces platyprosophi,Rhizomarasmius cunninghamietorum,Skeletocutis cangshanensis,Skeletocutis subchrysella,Sporisorium anadelphiae-leptocomae,Tetraploa dashaoensis,Tomentella exiguelata,Tomentella fuscoaraneosa,Tricholomopsis lechatii,Vaginatispora favispora and Wetmoreana blastidiocalcarea.The new combination is Torula sundara.The 39 new records on hosts and geographical distribution comprise Apiospora guiyangensis,Aplosporella artocarpi,Ascochyta medicaginicola,Astrocystis bambusicola,Athelia rolfsii,Bambusicola bambusae,Bipolaris luttrellii,Botryosphaeria dothidea,Chlorophyllum squamulosum,Colletotrichum aeschynomenes,Colletotrichum pandanicola,Coprinopsis cinerea,Corylicola italica,Curvularia alcornii,Curvularia senegalensis,Diaporthe foeniculina,Diaporthe longicolla,Diaporthe phaseolorum,Diatrypella quercina,Fusarium brachygibbosum,Helicoma aquaticum,Lepiota metulispora,Lepiota pongduadensis,Lepiota subvenenata,Melanconiella meridionalis,Monotosporella erecta,Nodulosphaeria digitalis,Palmiascoma gregariascomum,Periconia byssoides,Periconia cortaderiae,Pleopunctum ellipsoideum,Psilocybe keralensis,Scedosporium apiospermum,Scedosporium dehoogii,Scedosporium marina,Spegazzinia deightonii,Torula fci,Wiesneriomyces laurinus and Xylaria venosula.All these taxa are supported by morphological and multigene phylogenetic analyses.This article allows the researchers to publish fungal collections which areimportant for future studies.An updated,accurate and timely report of fungus-host and fungus-geography is important.We also provide an updated list of fungal taxa published in the previous fungal diversity notes.In this list,erroneous taxa and synonyms are marked and corrected accordingly.展开更多
This article is the tenth series of the Fungal Diversity Notes,where 114 taxa distributed in three phyla,ten classes,30 orders and 53 families are described and illustrated.Taxa described in the present study include ...This article is the tenth series of the Fungal Diversity Notes,where 114 taxa distributed in three phyla,ten classes,30 orders and 53 families are described and illustrated.Taxa described in the present study include one new family(viz.Pseudoberkleasmiaceae in Dothideomycetes),five new genera(Caatingomyces,Cryptoschizotrema,Neoacladium,Paramassaria and Trochilispora)and 71 new species,(viz.Acrogenospora thailandica,Amniculicola aquatica,A.guttulata,Angustimassarina sylvatica,Blackwellomyces lateris,Boubovia gelatinosa,Buellia viridula,Caatingomyces brasiliensis,Calophoma humuli,Camarosporidiella mori,Canalisporium dehongense,Cantharellus brunneopallidus,C.griseotinctus,Castanediella meliponae,Coprinopsis psammophila,Cordyceps succavus,Cortinarius minusculus,C.subscotoides,Diaporthe italiana,D.rumicicola,Diatrypella delonicis,Dictyocheirospora aquadulcis,D.taiwanense,Digitodesmium chiangmaiense,Distoseptispora dehongensis,D.palmarum,Dothiorella styphnolobii,Ellisembia aurea,Falciformispora aquatic,Fomitiporia carpinea,F.lagerstroemiae,Grammothele aurantiaca,G.micropora,Hermatomyces bauhiniae,Jahnula queenslandica,Kamalomyces mangrovei,Lecidella yunnanensis,Micarea squamulosa,Muriphaeosphaeria angustifoliae,Neoacladium indicum,Neodidymelliopsis sambuci,Neosetophoma miscanthi,N.salicis,Nodulosphaeria aquilegiae,N.thalictri,Paramassaria samaneae,Penicillium circulare,P.geumsanense,P.mali-pumilae,P.psychrotrophicum,P.wandoense,Phaeoisaria siamensis,Phaeopoacea asparagicola,Phaeosphaeria penniseti,Plectocarpon galapagoense,Porina sorediata,Pseudoberkleasmium chiangmaiense,Pyrenochaetopsis sinensis,Rhizophydium koreanum,Russula prasina,Sporoschisma chiangraiense,Stigmatomyces chamaemyiae,S.cocksii,S.papei,S.tschirnhausii,S.vikhrevii,Thysanorea uniseptata,Torula breviconidiophora,T.polyseptata,Trochilispora schefflerae and Vaginatispora palmae).Further,twelve new combinations(viz.Cryptoschizotrema cryptotrema,Prolixandromyces australi,P.elongatus,P.falcatus,P.longispinae,P.microveliae,P.neoalardi,P.polhemorum,P.protuberans,P.pseudoveliae,P.tenuistipitis and P.umbonatus),an epitype is chosen for Cantharellus goossensiae,a reference specimen for Acrogenospora sphaerocephala and new synonym Prolixandromyces are designated.Twenty-four new records on new hosts and new geographical distributions are also reported(i.e.Acrostalagmus annulatus,Cantharellus goossensiae,Coprinopsis villosa,Dothiorella plurivora,Dothiorella rhamni,Dothiorella symphoricarposicola,Dictyocheirospora rotunda,Fasciatispora arengae,Grammothele brasiliensis,Lasiodiplodia iraniensis,Lembosia xyliae,Morenoina palmicola,Murispora cicognanii,Neodidymelliopsis farokhinejadii,Neolinocarpon rachidis,Nothophoma quercina,Peroneutypa scoparia,Pestalotiopsis aggestorum,Pilidium concavum,Plagiostoma salicellum,Protofenestella ulmi,Sarocladium kiliense,Tetraploa nagasakiensis and Vaginatispora armatispora).展开更多
In plant pathology,the correct naming of a species is essential for determining the causal agents of disease.Species names not only serve the general purpose of concise communication,but also are critical for effectiv...In plant pathology,the correct naming of a species is essential for determining the causal agents of disease.Species names not only serve the general purpose of concise communication,but also are critical for effective plant quarantine,prevent-ing the introduction of new pathogens into a territory.Many phytopathogenic genera have multiple species and,in several genera,disagreements between the multiple prevailing species concept definitions result in numerous cryptic species.Some of these species were previously called by various names;forma speciales(specialised forms),subspecies,or pathotypes.However,based on new molecular evidence they are being assigned into new species.The frequent name changes and lack of consistent criteria to delineate cryptic species,species,subspecies,forms,and races create increasing confusion,often making communication among biologists arduous.Furthermore,such ambiguous information can convey misleading evo-lutionary concepts and species boundaries.The aim of this paper is to review these concepts,clarify their use,and evaluate them by referring to existing examples.We specifically address the question,“Do plant pathogens require a different ranking system?”We conclude that it is necessary to identify phytopathogens to species level based on data from multiple approaches.Furthermore,this identification must go beyond species level to clearly classify hitherto known subspecies,forms and races.In addition,when naming phytopathogenic genera,plant pathologists should provide more information about geographic locations and host ranges as well as host specificities for individual species,cryptic species,forms or races.When describing a new phytopathogen,we suggest that authors provide at least three representative strains together with pathogenicity test results.If Koch’s postulates cannot be fulfilled,it is necessary to provide complementary data such as associated disease severity on the host plant.Moreover,more sequenced collections of species causing diseases should be published in order to stabilise the boundaries of cryptic species,species,subspecies,forms,and races.展开更多
This study is unique as it compares traditional and high-resolution culture-independent approaches using the same set of samples to study the saprotrophic fungi on Vitis vinifera.We identified the saprotrophic communi...This study is unique as it compares traditional and high-resolution culture-independent approaches using the same set of samples to study the saprotrophic fungi on Vitis vinifera.We identified the saprotrophic communities of table grape(Red Globe)and wine grape(Carbanate Gernischet)in China using both traditional and culture-independent techniques.The traditional approach used direct observations based on morphology,single spore isolation and phylogenetic analysis yielding 45 taxa which 19 were commonly detected in both cultivars.The same set of samples were then used for Illumina sequencing which analyzed ITS1 sequence data and detected 226 fungal OTUs,of which 176 and 189 belong to the cultivars Carbanate Gernischet and Red Globe,respectively.There were 139 OTUs shared between the two V.vinifera cultivars and 37 and 50 OTUs were specific to Carbanate Gernischet and Red Globe cultivars respectively.In the Carbanate Gernischet cultivar,Ascomycota accounted for 77%of the OTUs and in Red Globe,almost all sequenced were Ascomycota.The fungal taxa overlap at the genus and species level between the traditional and culture-independent approach was relatively low.In the traditional approach we were able to identify the taxa to species level,while in the culture-independent method we were frequently able to identify the taxa to family or genus level.This is remarkable as we used the same set of samples collected in China for both approaches.We recommend the use of traditional techniques to accurately identify taxa.Culture-independent method can be used to get a better understanding about the organisms that are present in a host in its natural environment.We identified primary and secondary plant pathogens and endophytes in the saprotrophic fungal communities,which support previous observations,that dead plant material in grape vineyards can be the primary sources of disease.Finally,based on present and previous findings,we provide a worldwide checklist of 905 fungal taxa on Vitis species,which includes their mode of life and distribution.展开更多
基金the Chinese Academy of Sciences,project number 2013T2S0030,for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botanythe National Research Council of Thailand(grant for Pestalotiopsis No:55201020008)+3 种基金Mae Fah Luang University(grant for Pestalotiopsis No:55101020004)for financial supportthe University of Malaya for grant number RU006H-2014 entitled“diversity and importance of fungal mangrove disease”Financial support to Julia Pawłowska and Marta Wrzosek was partially provided by the Polish Ministry of Science and Higher Education(MNiSW),grant no.NN303_548839financial support from FORMAS(215-2011-498).
文摘Many fungi are pathogenic on plants and cause significant damage in agriculture and forestry.They are also part of the natural ecosystem and may play a role in regulating plant numbers/density.Morphological identification and analysis of plant pathogenic fungi,while important,is often hampered by the scarcity of discriminatory taxonomic characters and the endophytic or inconspicuous nature of these fungi.Molecular(DNA sequence)data for plant pathogenic fungi have emerged as key information for diagnostic and classification studies,although hampered in part by non-standard laboratory practices and analytical methods.To facilitate current and future research,this study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota,Basidiomycota,Mucormycotina(Fungi),and Oomycota,using recent molecular data,up-to-date names,and the latest taxonomic insights.Lineagespecific laboratory protocols together with advice on their application,as well as general observations,are also provided.We hope to maintain updated backbone trees of these fungal lineages over time and to publish them jointly as new data emerge.Researchers of plant pathogenic fungi not covered by the present study are invited to join this future effort.Bipolaris,Botryosphaeriaceae,Botryosphaeria,Botrytis,Choanephora,Colletotrichum,Curvularia,Diaporthe,Diplodia,Dothiorella,Fusarium,Gilbertella,Lasiodiplodia,Mucor,Neofusicoccum,Pestalotiopsis,Phyllosticta,Phytophthora,Puccinia,Pyrenophora,Pythium,Rhizopus,Stagonosporopsis,Ustilago and Verticillium are dealt with in this paper.
基金supported by the Strategic Priority Research Program of the Chinese Academy of Sciences,Grant No.XDB31000000Naritsada Thongklang would like to thank Thailand research fund grants“Study of saprobic Agaricales in Thailand to find new industrial mushroom products”(Grant No.DBG6180015)+10 种基金Mae Fah Luang University grant“Optimal conditions for domestication and biological activities of selected species of Ganoderrma”(Grant No.621C1535)K.D.Hyde and Naritsada Thongklang would like to thanks to Thailand research fund grants“Domestication and bioactive evaluation of Thai Hymenopellis,Oudemansiella,Xerula and Volvariella species(basidiomycetes)”(Grant No.DBG6180033)K.D.Hyde thanks the financial support from the Visiting Professor grant at Chiang Mai University,Thailand and KIB.The authors acknowledge the contribution of M.M.Vasanthakumari,K.M.Manasa and P.Rajani,in various stages of preparation of the manuscript.Samantha C.Karunarathna thanks CAS President’s International Fellowship Initiative(PIFI)for funding his postdoctoral research(Number 2018PC0006)the National Science Foundation.Associate Professor R Jeewon thanks University of Mauritius for support.Binu C.Samarakoon offers her sincere gratitude to the“National Research Council of Thailand”(NRCT Grant No.256108A3070006)for the financial supportPeter E Mortimer would like to thank the National Science Foundation of China and the Chinese Academy of Sciences for financial support under the following Grants:41761144055,41771063,Y4ZK111B01M.Doilom would like to thank Chiang Mai University,the 5th batch of Postdoctoral Orientation Training Personnel in Yunnan Province and the 64th batch of China Postdoctoral Science Foundation.T.S.Suryanarayanan thanks the United States-India Educational Foundation(USIEF)New Delhi and the Fulbright Scholar Program(USA)for the award of a Fulbright-Nehru Senior Researcher grant to conduct research in the Department of Chemistry and Biochemistry,The Ohio State University,USA.Thanks to Research and Researchers for Industries Grant(PHD57I0015)for financial support to Boontiya Chuankid.Birthe Sandargo is grateful to the Deutsche Forschungsgemeinschaft(DFG)for a PhD grant.Clara Chepkirui is indebted to a PhD stipend from the German Academic Exchange Service(DAAD)and the Kenya National Council for Science and Technology(NACOSTI)Kevin D Hyde would also like to thank the National Research Council of Thailand grants Thailands’Fungal Diversity,Solving Problems and Creating Biotechnological Products(Grant No.61201321016)This work is partly supported by the Department of Biotechnology,Government of India,New Delhi(Chemical Ecology of the North East Region(NER)of India:A collaborative programme Linking NER and Bangalore ResearchersDBT-NER/Agri/24/2013)and Indian Council of Agricultural Research(ICAR-CAAST-Project F.No./NAHEP/CAAST/2018-19)Government of India,New Delhi.
文摘Fungi are an understudied,biotechnologically valuable group of organisms.Due to the immense range of habitats that fungi inhabit,and the consequent need to compete against a diverse array of other fungi,bacteria,and animals,fungi have developed numerous survival mechanisms.The unique attributes of fungi thus herald great promise for their application in biotechnology and industry.Moreover,fungi can be grown with relative ease,making production at scale viable.The search for fungal biodiversity,and the construction of a living fungi collection,both have incredible economic potential in locating organisms with novel industrial uses that will lead to novel products.This manuscript reviews fifty ways in which fungi can potentially be utilized as biotechnology.We provide notes and examples for each potential exploitation and give examples from our own work and the work of other notable researchers.We also provide a flow chart that can be used to convince funding bodies of the importance of fungi for biotechnological research and as potential products.Fungi have provided the world with penicillin,lovastatin,and other globally significant medicines,and they remain an untapped resource with enormous industrial potential.
基金financial support from European Funds through COMPETENational Funds through the Portuguese Foundation for Science and Technology(FCT)within projects PTDC/AGR-FOR/3807/2012-FCOMP-01-0124-FEDER-027979 and PEst-C/MAR/LA0017/2013+4 种基金supported by National Science Foundation Grant DBI 1046115supported by FFG,BMWFJ,BMVIT,ZIT,Zukunftsstiftung Tirol,and Land Steiermark within the Austrian COMET program FFG Grant 824186Financial support to JP was partially provided by the Polish Ministry of Science and Higher Education(MNiSW),grant no.NN303_548839financial support from FAPEMIG and CNPqfunded by the Government of Canada through Genome Canada and the Ontario Genomics Institute through the Biomonitoring 2.0 project(OGI-050).
文摘Plant pathogenic fungi are a large and diverse assemblage of eukaryotes with substantial impacts on natural ecosystems and human endeavours.These taxa often have complex and poorly understood life cycles,lack observable,discriminatory morphological characters,and may not be amenable to in vitro culturing.As a result,species identification is frequently difficult.Molecular(DNA sequence)data have emerged as crucial information for the taxonomic identification of plant pathogenic fungi,with the nuclear ribosomal internal transcribed spacer(ITS)region being the most popular marker.However,international nucleotide sequence databases are accumulating numerous sequences of compromised or low-resolution taxonomic annotations and substandard technical quality,making their use in the molecular identification of plant pathogenic fungi problematic.Here we report on a concerted effort to identify high-quality reference sequences for various plant pathogenic fungi and to re-annotate incorrectly or insufficiently annotated public ITS sequences from these fungal lineages.A third objective was to enrich the sequences with geographical and ecological metadata.The results-a total of 31,954 changes-are incorporated in and made available through the UNITE database for molecular identification of fungi(http://unite.ut.ee),including standalone FASTA files of sequence data for local BLAST searches,use in the next-generation sequencing analysis platforms QIIME and mothur,and related applications.The present initiative is just a beginning to cover the wide spectrum of plant pathogenic fungi,and we invite all researchers with pertinent expertise to join the annotation effort.
基金This work was financially supported by Beijing Talent Program for Dr.Jiye Yan,CARS-29,Beijing science and technology project D17110001617002We thank Dr.Heng Gui for his support to submit Raw Illumina reads to the Sequence Read Archive(SRA)of National Center for Biotechnology Information(NCBI).
文摘Grapevines(Vitis vinifera)are colonized by ubiquitous microorganisms known as endophytes,which may have advantageous or neutral effects without causing disease symptoms.Certain endophytes are uncultivable,so culture-independent approaches such as next generation sequencing(NGS)can help for a better understanding of their ecology and distribution.To date,there are no studies which directly link NGS results with taxa derived from a culturing approach,integrating morphological and multi-gene phylogenetic analysis of endophytes.In this study,a culture-dependent and high-resolution culture-independent approach(next generation sequencing)were used to identify endophytes in grapevine stems.In the culture-dependent approach,a total of 94 isolates were recovered from 84 of 144 healthy grapevine stem fragments(colonization rate=58.3%).The study is unique as we used subsets of combined multi-gene regions to identify the endophytes to species level.Based on each multi-gene phylogenetic analysis,28 species belong to 19 genera(Acremonium,Alternaria,Arthrinium,Ascorhizoctonia,Aspergillus,Aureobasidium,Bipolaris,Botryosphaeria,Botrytis,Chaetomium,Cladosporium,Curvularia,Hypoxylon,Lasiodiplodia,Mycosphaerella,Nigrospora,Penicillium,Phoma,Scopulariopsis)were identified.A higher number of culturable fungi were obtained from 13 year-old vines,followed by eight and three yearold vines.In the culture-independent approach,a fungal richness of 59 operational taxonomic units(OTU)was detected,being highest in 13 year-old grapevines,followed by eight and three years.Even though the cultivation approach detected lower fungal richness,the results related to stem are consistent for fungal community composition and richness.Comparison of the fungal taxa identified by the two approaches resulted in an overlap of 53%of the fungal genera.Due to interspecific variability of the sequences from NGS,in many cases the OTUs(even with the highly abundant ones)were only assignable to order,family or genus level.Incorporating multi-gene phylogenies we successfully identified many of the NGS derived OTUs with poor taxonomic information in reference databases to the genus or species levels.Hence,this study signifies the importance of applying both culture-dependent and culture-independent approaches to study the fungal endophytic community composition in Vitis vinifera.This principle could also be applied to other host species and ecosystem level studies.
基金Saowaluck Tibpromma would like to thank the Molecular Biology Experimental Center at Kunming Institute of Botany for facilities for molecular work,the Mushroom Research Foundation(MRF)Chiang Rai,Thailand for the financial support of her study and Shaun Pennycook is thanked for nomenclatural advice.K.D.Hyde would like to thank the Thailand Research Fund Grant No.RSA5980068 entitled“Biodiversity,phylogeny and role of fungal endophytes on above parts of Rhizophora apiculata and Nypa fruticans”+21 种基金the Chinese Academy of Sciences,Project Number 2013T2S0030for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany and National Research Council of Thailand(Mae Fah Luang University)for a grants“Biodiversity,phylogeny and role of fungal endophytes of Pandanaceae”(Grant No.:592010200112)“Diseases of mangrove trees and maintenance of good forestry practice”(Grant No.:60201000201)for supporting this study.S.C.Karunarathna,P.E.Mortimer and J.C.Xu would like to thank the World Agroforestry Centre,East and Central Asia OfficeKey Laboratory for Plant Diversity and Biogeography of East Asia,Kunming Institute of Botany,Chinese Academy of Sciencethe ChineseMinistry of Science and Technology,under the 12th 5-year National Key Technology Support Program(NKTSP)2013 BAB07B06 integration and comprehensive demonstration of key technologies on Green Phosphate-mountaion Construction and the CGIAR Research Program 6:Forest,Trees and Agroforestry for partial funding.The authors would like to extend their sincere appreciation to the Deanship of Scientific Research at King Saud University for funding this research group NO(RG-1436-025)Financial support by the German Academic Exchange Service(DAAD)and the Thai Royal Golden Ph.D.Jubilee-Industry program(RGJ)for a joint TRFDAAD PPP(2012-2014)academic exchange grant to K.D.Hyde and M.Stadler,and the RGJ for a personal grant to B.Thongbai(No.Ph.D/0138/2553 in 4.S.MF/53/A.3)is gratefully acknowledged.Chayanard Phukhamsakda(PHD/0020/2557)acknowledges the Royal Golden Jubilee Ph.D.Program under the Thailand Research Fund.Mingkwan Doilom acknowledges the Royal Golden Jubilee Ph.D.Program(PHD./0072/2553 in 4.S.M.F./53/A.2)under the Thailand Research Fund.Ausana Mapook is grateful to Research and Researchers for Industries(RRI)PHD57I0012.Rungtiwa Phookamsak expresses sincere appreciation to The CAS President’s International Fellowship for Postdoctoral Researchers(Project No.2017PB0072)Qi Zhao thanks the National Natural Science Foundation of China(No.31360015)the CAS/SAFEA International Partnership Program for Creative Research Teams,and the Knowledge Innovation Program of the Chinese Academy of Sciences(No.KSCX2-EW-Z-9 and KIB2016002).Andre´Luiz Cabral Monteiro de Azevedo Santiago,Carlos Alberto Fragoso de Souza,Diogo Xavier Lima,Rafael Jose´Vilela de Oliveira and Gladstone Alves da Silva would like to thank the Coordenac¸a˜o de Aperfeic¸oamento de Pessoal de Nı´vel Superior(Coordination for the Improvement of Higher Education Personnel)(CAPES)and the Fundac¸a˜o de Amparo a`Cieˆncia e Tecnologia do Estado de Pernambuco(Foundation for the support of Science and Technology of the state of Pernambuco)(FACEPE)for the postgraduate scholarships awarded to Diogo X.Lima and Carlos A.F.de Souza,respectively.We would also like to thank the Conselho Nacional de Desenvolvimento Cientı´fico e Tecnolo´gico(National Council for Scientific and Technological Development)(CNPq)and FACEPE for financial support through the projects:‘Mucoromycotina in upland forests in the semi-arid region of Pernambuco’(CNPq-458391/2014-0)‘Diversity of Mucoromycotina in different ecosystems of the Pernambuco Atlantic Rainforest’(FACEPE-APQ 0842-2.12/14).H.B.Lee was supported by the Graduate Program for the Undiscovered Taxa of Korea,and by the Project on Survey and Discovery of Indigenous Fungal Species of Korea funded by NIBR and Project on Discovery of Fungi from Freshwater and Collection of Fungarium funded by NNIBR of the Ministry of Environment(MOE)and in part by a fund from National Institute of Animal Science under Rural Development Administration,Republic of Korea.Z.L Luo and H.Y Su would like to thank the National Natural Science Foundation of China(Project ID:31460015)for financial support on Study of the distribution pattern and driving factors of aquatic fungal diversity in the region of Three Parallel Rivers.Saranyaphat Boonmee thanks the National Research Council of Thailand,project number 2560A30702021the Thailand Research Fund,project number TRG5880152 for providing financial support.C.G.Lin and Y.Wang thank the grant from the National Natural Science Foundation of China(No.NSFC 31560489)Fundamental Research on Science and Technology,Ministry of Science and Technology of China(2014FY120100)Mr.Jingzu Sun thank for the National Natural Science Foundations of China(No.31600024)Wei Dong thanks the for National Natural Science Foundation of China(Project ID:NSF 31500017 to Huang Zhang)P.N.Singh,A.Baghela,S.K.Singh,and S.Aamir thank the Director,MACS’Agharkar Research Institute,Pune,India for providing facilities and Rajendra Singh(Department of Zoology,DDU Gorakhpur University,UP,India)for identification of insect-host.Saisamorn Lumyong and Rene K.Schumacher are thanked for valuable suggestions and collecting specimens.K.N.A.Raj acknowledges support from the University Grants Commission(UGC)India,in the form of a Rajiv Gandhi National Fellowship(Grant No.F.14-2(SC)/2009(SA-III))K.N.A.Raj also acknowledges the permissions given to him for collecting agaric specimens from the forests of Kerala by the Principal Chief Conservator of Forests,Government of Kerala(WL12-4042/2009 dated 5 August 2009).K.P.D.Latha acknowledges the financial support from the Kerala State Council for Science,Technology and Environment(KSCSTE)in the form of a PhD fellowship(Grant No.001/FSHP/2011/CSTE)K.P.D.Latha also acknowledges the permission(No.WL10-4937/2012,dated 3-10-2013)given to her by the Principal Chief Conservator of Forests,Government of Kerala,to collect agaric specimens from the forests of Kerala.Zdenko Tkalcec has been partially supported by Croatian Science Foundation under the project HRZZ-IP-11-2013-2202(ACCTA)is grateful to Milan Cerkez for his great contribution to the study of coprinoid and coprophilous fungi in Croatia.Vladimir Antonı´n thank the Moravian Museum by the Ministry of Culture of the Czech Republic as part of its long-term conceptual development programme for research institutions(DKRVO,ref.MK000094862)T.C.Wen,Y.P.Xiao,C.Norphanphoun and K.K.Hapuarachchi are grateful to the National Natural Science Foundation of China(No.31460012)and the Science and Technology Foundation of Guizhou Province(No.[2016]2863)Y.W.Lim would like to thanks NIBR supporting the Project on Survey and Discovery of Indigenous Fungal Species of Korea.Kanad Das and Dyutiparna Chakraborty are thankful to the Director,Botanical Survey of India(BSI)and Scientist-in-Charge,BSI,Gangtok for providing facilities during this study.Sinchan Adhikari,Joydeep Karmakar and Tapas Kumar Bandyopadhyay would like to acknowledge DST-PURSE and DST-FIST for providing central instrumentation facilities and Alan JL Phillips acknowledges the Biosystems and Integrative Sciences Institute(BioISI,FCT/UID/Multi/04046/2013).
文摘This is a continuity of a series of taxonomic and phylogenetic papers on the fungi where materials were collected from many countries,examined and described.In addition to extensive morphological descriptions and appropriate asexual and sexual connections,DNA sequence data are also analysed from concatenated datasets to infer phylogenetic relationships and substantiate systematic positions of taxa within appropriate ranks.Wherever new species or combinations are proposed,we apply an integrative approach using morphological and molecular data as well as ecological features wherever applicable.Notes on 112 fungal taxa are compiled in this paper including Biatriosporaceae and Roussoellaceae,Didysimulans gen.nov.,81 new species,18 new host records and new country records,five reference specimens,two new combinations,and three sexual and asexual morph reports.The new species are Amanita cornelii,A.emodotrygon,Angustimassarina alni,A.arezzoensis,A.italica,A.lonicerae,A.premilcurensis,Ascochyta italica,A.rosae,Austroboletus appendiculatus,Barriopsis thailandica,Berkleasmium ariense,Calophoma petasitis,Camarosporium laburnicola,C.moricola,C.grisea,C.ossea,C.paraincrustata,Colletotrichum sambucicola,Coprinopsis cerkezii,Cytospora gelida,Dacrymyces chiangraiensis,Didysimulans italica,D.mezzanensis,Entodesmium italica,Entoloma magnum,Evlachovaea indica,Exophiala italica,Favolus gracilisporus,Femsjonia monospora,Fomitopsis flabellata,F.roseoalba,Gongronella brasiliensis,Helvella crispoides,Hermatomyces chiangmaiensis,H.chromolaenae,Hysterium centramurum,Inflatispora caryotae,Inocybe brunneosquamulosa,I.luteobrunnea,I.rubrobrunnea,Keissleriella cirsii,Lepiota cylindrocystidia,L.flavocarpa,L.maerimensis,Lophiotrema guttulata,Marasmius luculentus,Morenoina calamicola,Moelleriella thanathonensis,Mucor stercorarius,Myrmecridium fluviae,Myrothecium septentrionale,Neosetophoma garethjonesii,Nigrograna cangshanensis,Nodulosphaeria guttulatum,N.multiseptata,N.sambuci,Panus subfasciatus,Paraleptosphaeria padi,Paraphaeosphaeria viciae,Parathyridaria robiniae,Penicillium punicae,Phaeosphaeria calamicola,Phaeosphaeriopsis yuccae,Pleurophoma italica,Polyporus brevibasidiosus,P.koreanus,P.orientivarius,P.parvovarius,P.subdictyopus,P.ulleungus,Pseudoasteromassaria spadicea,Rosellinia mearnsii,Rubroboletus demonensis,Russula yanheensis,Sigarispora muriformis,Sillia italica,Stagonosporopsis ailanthicola,Strobilomyces longistipitatus,Subplenodomus galicola and Wolfiporia pseudococos.The new combinations are Melanomma populina and Rubroboletus eastwoodiae.The reference specimens are Cookeina tricholoma,Gnomoniopsis sanguisorbae,Helvella costifera,Polythrincium trifolii and Russula virescens.The new host records and country records are Ascochyta medicaginicola,Boletellus emodensis,Cyptotrama asprata,Cytospora ceratosperma,Favolaschia auriscalpium,F.manipularis,Hysterobrevium mori,Lentinus sajor-caju,L.squarrosulus,L.velutinus,Leucocoprinus cretaceus,Lophiotrema vagabundum,Nothophoma quercina,Platystomum rosae,Pseudodidymosphaeria phlei,Tremella fuciformis,Truncatella spartii and Vaginatispora appendiculata and three sexual and asexual morphs are Aposphaeria corallinolutea, Dothiorabuxi and Hypocrella calendulina.
文摘This article is the 14th in the Fungal Diversity Notes series,wherein we report 98 taxa distributed in two phyla,seven classes,26 orders and 50 families which are described and illustrated.Taxa in this study were collected from Australia,Brazil,Burkina Faso,Chile,China,Cyprus,Egypt,France,French Guiana,India,Indonesia,Italy,Laos,Mexico,Russia,Sri Lanka,Thailand,and Vietnam.There are 59 new taxa,39 new hosts and new geographical distributions with one new combination.The 59 new species comprise Angustimassarina kunmingense,Asterina lopi,Asterina brigadeirensis,Bartalinia bidenticola,Bartalinia caryotae,Buellia pruinocalcarea,Coltricia insularis,Colletotrichum fexuosum,Colletotrichum thasutense,Coniochaeta caraganae,Coniothyrium yuccicola,Dematipyriforma aquatic,Dematipyriforma globispora,Dematipyriforma nilotica,Distoseptispora bambusicola,Fulvifomes jawadhuvensis,Fulvifomes malaiyanurensis,Fulvifomes thiruvannamalaiensis,Fusarium purpurea,Gerronema atrovirens,Gerronema favum,Gerronema keralense,Gerronema kuruvense,Grammothele taiwanensis,Hongkongmyces changchunensis,Hypoxylon inaequale,Kirschsteiniothelia acutisporum,Kirschsteiniothelia crustaceum,Kirschsteiniothelia extensum,Kirschsteiniothelia septemseptatum,Kirschsteiniothelia spatiosum,Lecanora immersocalcarea,Lepiota subthailandica,Lindgomyces guizhouensis,Marthe asmius pallidoaurantiacus,Marasmius tangerinus,Neovaginatispora mangiferae,Pararamichloridium aquisubtropicum,Pestalotiopsis piraubensis,Phacidium chinaum,Phaeoisaria goiasensis,Phaeoseptum thailandicum,Pleurothecium aquisubtropicum,Pseudocercospora vernoniae,Pyrenophora verruculosa,Rhachomyces cruralis,Rhachomyces hyperommae,Rhachomyces magrinii,Rhachomyces platyprosophi,Rhizomarasmius cunninghamietorum,Skeletocutis cangshanensis,Skeletocutis subchrysella,Sporisorium anadelphiae-leptocomae,Tetraploa dashaoensis,Tomentella exiguelata,Tomentella fuscoaraneosa,Tricholomopsis lechatii,Vaginatispora favispora and Wetmoreana blastidiocalcarea.The new combination is Torula sundara.The 39 new records on hosts and geographical distribution comprise Apiospora guiyangensis,Aplosporella artocarpi,Ascochyta medicaginicola,Astrocystis bambusicola,Athelia rolfsii,Bambusicola bambusae,Bipolaris luttrellii,Botryosphaeria dothidea,Chlorophyllum squamulosum,Colletotrichum aeschynomenes,Colletotrichum pandanicola,Coprinopsis cinerea,Corylicola italica,Curvularia alcornii,Curvularia senegalensis,Diaporthe foeniculina,Diaporthe longicolla,Diaporthe phaseolorum,Diatrypella quercina,Fusarium brachygibbosum,Helicoma aquaticum,Lepiota metulispora,Lepiota pongduadensis,Lepiota subvenenata,Melanconiella meridionalis,Monotosporella erecta,Nodulosphaeria digitalis,Palmiascoma gregariascomum,Periconia byssoides,Periconia cortaderiae,Pleopunctum ellipsoideum,Psilocybe keralensis,Scedosporium apiospermum,Scedosporium dehoogii,Scedosporium marina,Spegazzinia deightonii,Torula fci,Wiesneriomyces laurinus and Xylaria venosula.All these taxa are supported by morphological and multigene phylogenetic analyses.This article allows the researchers to publish fungal collections which areimportant for future studies.An updated,accurate and timely report of fungus-host and fungus-geography is important.We also provide an updated list of fungal taxa published in the previous fungal diversity notes.In this list,erroneous taxa and synonyms are marked and corrected accordingly.
基金the Foreign Experts Bureau of Yunnan Province,Foreign Talents Program(2018,Grant No.YNZ2018002)Thailand Research grants entitled Biodiversity,phylogeny and role of fungal endophytes on above parts of Rhizophora apiculata and Nypa fruticans(Grant No.RSA5980068)+60 种基金the future of specialist fungi in a changing climate:baseline data for generalist and specialist fungi associated with ants,Rhododendron species and Dracaena species(Grant No.DBG6080013)Impact of climate change on fungal diversity and biogeography in the Greater Mekong Subregion(Grant No.RDG6130001)Chiang Mai University for the award of visiting ProfessorCAS President’s International Fellowship Initiative(PIFI)for funding his postdoctoral research(Grant No.2018PC0006)the National Science Foundation of China(NSFC,project code 31750110478)supported by the Graduate Program for the Undiscovered Taxa of Koreain part by the Project on Survey and Discovery of Indigenous Fungal Species of Korea funded by NIBR and Project on Discovery of Fungi from Freshwater and Collection of Fungarium funded by NNIBR of the Ministry of Environment(MOE)in part carried out with the support of Cooperative Research Program for Agriculture Science and Technology Development(PJ013744),Rural Development Administration,Republic of Koreain part supported by the BK21 plus program through the National Research Foundation(NRF)funded by the Ministry of Education of Korea.Jian-Kui Liu thanks the National Natural Science Foundation of China(NSFC 31600032)the CNPq(Conselho Nacional de Desenvolvimento Cientifico e Tecnologico)for a research grant(309058/2015-5)funding for collecting trips(401186/2014-8)a collaborative project with RL as Special Visiting Professor(314570/2014-4)Funding for phylogenetic work on Graphidaceae was provided by a grant from the National Science Foundation(NSF)to The Field Museum:DEB-1025861"ATM-Assembling a taxonomic monograph:The lichen family Graphidaceae"PI Thorsten Lumbsch,CoPI Robert Luckingthe CAPES,CNPq,and FAPEMIG for financial support and ICMBio/FLONA-Paraopeba for providing facilities and permits for the exploration surveys of the mycodiversity in their protected areasthe Graduate Program for the Biodiversity and Biotechnology Network of the Legal Amazon(UFPA-MPEG,Brazil)the Conselho Nacional de Desenvolvimento Cientifico Programa de Capacitacao for the scholarship to AMSS(Programa de Capacitacao Institucional 303073/2018-7)CNPq(Sisbiota 563342/2010-2,PROTAX 562106/2010-3)FACEPE(APQ 0788-2.03/12)for funding this researchsupport by a long-term research development project No.RVO 67985939 of the Czech Academy of Sciences,Institute of Botanyfinancial support from Conselho Nacional de Pesquisa e Desenvolvimento Cientifico(CNPq)National Natural Science Foundation of China(Project IDs GJL:31500013,RLZ:31470152 and 31360014)for financial supportjoint project of the Charles Darwin Foundation(CDF)and the Galapagos National Park(DPNG),part of a national biodiversity assessment"Biodiversidad Genetica del Ecuador"led by the Instituto Nacional de Biodiversidad del Ecuador(INABIO)Thailand Research Fund(TRF)Grant No.MRG6080089 entitledTaxonomy and phylogeny of foliar fungi from Mangrove and to Dr.Putarak Chomnuntithe Thailand Research Fund(No.TRG6180001)the National Research Council of Thailand(No.61215320023)Plant Genetic Conservation Project under the Royal Initiation of Her Royal Highness Princess Maha Chakri Sirindhorn-Mae Fah Luang Universitygrateful to Croatian Science Foundation for their financial support under the project HRZZ-IP-2018-01-1736(For-FungiDNA)the Royal Golden Jubilee PhD Program under Thailand Research Fund(RGJ)for a personal grant to C.Phukhamsakda(The scholarship no.PHD/0020/2557 to study towards a PhD)China-Thailand Joint Lab on Microbial Biotechnology(Most KY201701011)for financial supportCAS President’s International Fellowship Initiative(PIFI)for young staff(Grant No.2019FYC0003)the Research Fund from China Postdoctoral Science Foundation(Grant No.Y71B283261)the Yunnan Provincial Department of Human Resources and Social Security(Grant No.Y836181261)National Science Foundation of China(NSFC)project code 31850410489 for financial supportthe National Research Council of Thailand(Grant No.256108A3070006)for financial supportthe National Natural Science Foundation of China(No.31760014)the Science and Technology Foundation of Guizhou Province(No.[2016]2863)partially supported by Chiang Mai Universitythe Graduate Program for the Biodiversity and Biotechnology Network of the Legal Amazon(UFPA-MPEG),the Museu Paraense Emilio Goeldi(MPEG),the Universidade do Estado do Amapa and the Universidade Federal de Pernambuco for the logistical support of their laboratories and herbariaCNPq for the scholarship of AMSS(Programa de Capacitacao Institucional 303073/2018-7)CNPq(Sisbiota 563342/2010-2,PROTAX 562106/2010-3)and FACEPE(APQ 0788-2.03/12)for funding this researchthe ATM of the Paris'Museum and"l'Institut Ecologie et Environnement"(CNRS-INEE)for funding the field trip with Shelly Masi to Africaall the practical help and sharing her experiencemade possible through research permit 034/MENESR/DIRCAB/DGESRSTI/DRSTSPI/SSSTI/16 from the"Ministere de l'education nationale,de l’enseignement superieur et de la recherche scientifique"of the Central African Republicfinanced in part by the National Geographic Society(grants 6365-98,7921-05)in more recent years by the ATM-project"Past and present biodiversity"of the Museum national d’histoire naturelle(Dirs.Ph.Janvier and S.Peigne)University of Mauritius for research supportthe Thailand Research Fund(PHD60K0147)contribution number 2248 of the Charles Darwin Foundation for the Galapagos IslandsLakmali Dissanayake and Binu Samarakoon for their supportCAS President’s International Fellowship Initiative(PIFI)for funding his postdoctoral research(Number 2019PC0008)the National Science Foundation of China and the Chinese Academy of Sciences for financial support under the following grants:41761144055,41771063 and Y4ZK111B01CAS President’s International Fellowship Initiative(Grant No.2018VBB0021)German Academic Exchange Service Fellowship(Grant No.57314018)Ministry of innovative development of the Republic of Uzbekistan(Projects No.P3-2014-0830174425 and PP-20170921183)for funding his research projectsthe 5th batch of Postdoctoral Orientation Training Personnel in Yunnan Province(Grant No.Y934283261)the 64th batch of China Postdoctoral Science Foundation(Grant No.Y913082271)their kind support on manuscript writing.Jianchu Xu thanks Key Research Program of Frontier Sciences"Response of Asian mountain ecosystems to global change",CAS(Grant No.QYZDYSSW-SMC014)the 64th batch of China Postdoctoral Science Foundation(Grant No.Y913083271)the support from UID/MULTI/04046/2019 Research Unit grant from FCT,Portugal to BioISI.
文摘This article is the tenth series of the Fungal Diversity Notes,where 114 taxa distributed in three phyla,ten classes,30 orders and 53 families are described and illustrated.Taxa described in the present study include one new family(viz.Pseudoberkleasmiaceae in Dothideomycetes),five new genera(Caatingomyces,Cryptoschizotrema,Neoacladium,Paramassaria and Trochilispora)and 71 new species,(viz.Acrogenospora thailandica,Amniculicola aquatica,A.guttulata,Angustimassarina sylvatica,Blackwellomyces lateris,Boubovia gelatinosa,Buellia viridula,Caatingomyces brasiliensis,Calophoma humuli,Camarosporidiella mori,Canalisporium dehongense,Cantharellus brunneopallidus,C.griseotinctus,Castanediella meliponae,Coprinopsis psammophila,Cordyceps succavus,Cortinarius minusculus,C.subscotoides,Diaporthe italiana,D.rumicicola,Diatrypella delonicis,Dictyocheirospora aquadulcis,D.taiwanense,Digitodesmium chiangmaiense,Distoseptispora dehongensis,D.palmarum,Dothiorella styphnolobii,Ellisembia aurea,Falciformispora aquatic,Fomitiporia carpinea,F.lagerstroemiae,Grammothele aurantiaca,G.micropora,Hermatomyces bauhiniae,Jahnula queenslandica,Kamalomyces mangrovei,Lecidella yunnanensis,Micarea squamulosa,Muriphaeosphaeria angustifoliae,Neoacladium indicum,Neodidymelliopsis sambuci,Neosetophoma miscanthi,N.salicis,Nodulosphaeria aquilegiae,N.thalictri,Paramassaria samaneae,Penicillium circulare,P.geumsanense,P.mali-pumilae,P.psychrotrophicum,P.wandoense,Phaeoisaria siamensis,Phaeopoacea asparagicola,Phaeosphaeria penniseti,Plectocarpon galapagoense,Porina sorediata,Pseudoberkleasmium chiangmaiense,Pyrenochaetopsis sinensis,Rhizophydium koreanum,Russula prasina,Sporoschisma chiangraiense,Stigmatomyces chamaemyiae,S.cocksii,S.papei,S.tschirnhausii,S.vikhrevii,Thysanorea uniseptata,Torula breviconidiophora,T.polyseptata,Trochilispora schefflerae and Vaginatispora palmae).Further,twelve new combinations(viz.Cryptoschizotrema cryptotrema,Prolixandromyces australi,P.elongatus,P.falcatus,P.longispinae,P.microveliae,P.neoalardi,P.polhemorum,P.protuberans,P.pseudoveliae,P.tenuistipitis and P.umbonatus),an epitype is chosen for Cantharellus goossensiae,a reference specimen for Acrogenospora sphaerocephala and new synonym Prolixandromyces are designated.Twenty-four new records on new hosts and new geographical distributions are also reported(i.e.Acrostalagmus annulatus,Cantharellus goossensiae,Coprinopsis villosa,Dothiorella plurivora,Dothiorella rhamni,Dothiorella symphoricarposicola,Dictyocheirospora rotunda,Fasciatispora arengae,Grammothele brasiliensis,Lasiodiplodia iraniensis,Lembosia xyliae,Morenoina palmicola,Murispora cicognanii,Neodidymelliopsis farokhinejadii,Neolinocarpon rachidis,Nothophoma quercina,Peroneutypa scoparia,Pestalotiopsis aggestorum,Pilidium concavum,Plagiostoma salicellum,Protofenestella ulmi,Sarocladium kiliense,Tetraploa nagasakiensis and Vaginatispora armatispora).
基金We would like to thank the Thailand Research Fund,Grant RDG6130001 entitled“Impact of climate change on fungal diversity and biogeography in the Greater Mekong Subregion”.Kevin D Hyde thanks Chiang Mai University for the award of a Visiting Professor.Ishara S Manawasinghe thank Prof Marco Thines for guiding the development of this paper by providing valuable ideas and comments.Alan JL Phillips acknowledges the support from UIDB/04046/2020 and UIDP/04046/2020 Centre grants from FCT,Portugal(to BioISI).
文摘In plant pathology,the correct naming of a species is essential for determining the causal agents of disease.Species names not only serve the general purpose of concise communication,but also are critical for effective plant quarantine,prevent-ing the introduction of new pathogens into a territory.Many phytopathogenic genera have multiple species and,in several genera,disagreements between the multiple prevailing species concept definitions result in numerous cryptic species.Some of these species were previously called by various names;forma speciales(specialised forms),subspecies,or pathotypes.However,based on new molecular evidence they are being assigned into new species.The frequent name changes and lack of consistent criteria to delineate cryptic species,species,subspecies,forms,and races create increasing confusion,often making communication among biologists arduous.Furthermore,such ambiguous information can convey misleading evo-lutionary concepts and species boundaries.The aim of this paper is to review these concepts,clarify their use,and evaluate them by referring to existing examples.We specifically address the question,“Do plant pathogens require a different ranking system?”We conclude that it is necessary to identify phytopathogens to species level based on data from multiple approaches.Furthermore,this identification must go beyond species level to clearly classify hitherto known subspecies,forms and races.In addition,when naming phytopathogenic genera,plant pathologists should provide more information about geographic locations and host ranges as well as host specificities for individual species,cryptic species,forms or races.When describing a new phytopathogen,we suggest that authors provide at least three representative strains together with pathogenicity test results.If Koch’s postulates cannot be fulfilled,it is necessary to provide complementary data such as associated disease severity on the host plant.Moreover,more sequenced collections of species causing diseases should be published in order to stabilise the boundaries of cryptic species,species,subspecies,forms,and races.
基金s This work was financially supported by Beijing Talent Programm for Jiye Yan,CARS-29 and JNKYT201605.
文摘This study is unique as it compares traditional and high-resolution culture-independent approaches using the same set of samples to study the saprotrophic fungi on Vitis vinifera.We identified the saprotrophic communities of table grape(Red Globe)and wine grape(Carbanate Gernischet)in China using both traditional and culture-independent techniques.The traditional approach used direct observations based on morphology,single spore isolation and phylogenetic analysis yielding 45 taxa which 19 were commonly detected in both cultivars.The same set of samples were then used for Illumina sequencing which analyzed ITS1 sequence data and detected 226 fungal OTUs,of which 176 and 189 belong to the cultivars Carbanate Gernischet and Red Globe,respectively.There were 139 OTUs shared between the two V.vinifera cultivars and 37 and 50 OTUs were specific to Carbanate Gernischet and Red Globe cultivars respectively.In the Carbanate Gernischet cultivar,Ascomycota accounted for 77%of the OTUs and in Red Globe,almost all sequenced were Ascomycota.The fungal taxa overlap at the genus and species level between the traditional and culture-independent approach was relatively low.In the traditional approach we were able to identify the taxa to species level,while in the culture-independent method we were frequently able to identify the taxa to family or genus level.This is remarkable as we used the same set of samples collected in China for both approaches.We recommend the use of traditional techniques to accurately identify taxa.Culture-independent method can be used to get a better understanding about the organisms that are present in a host in its natural environment.We identified primary and secondary plant pathogens and endophytes in the saprotrophic fungal communities,which support previous observations,that dead plant material in grape vineyards can be the primary sources of disease.Finally,based on present and previous findings,we provide a worldwide checklist of 905 fungal taxa on Vitis species,which includes their mode of life and distribution.