Sponge gourd(Luffa cylindrica)is an important cultivated vegetable and medicinal plant in the family Cucurbitaceae.In this study,a draft genome sequence of the sponge gourd inbred line P93075 was analyzed.Using Illumi...Sponge gourd(Luffa cylindrica)is an important cultivated vegetable and medicinal plant in the family Cucurbitaceae.In this study,a draft genome sequence of the sponge gourd inbred line P93075 was analyzed.Using Illumina,PacBio,and 10×Genomics sequencing techniques as well as new assembly techniques such as FALCON and chromatin interaction mapping(Hi-C),a chromosome-scale genome of approximately 656.19 Mb,with an N50 scaffold length of 48.76 Mb,was generated.From this assembly,25,508 protein-coding gene loci were identified,and 63.81%of the whole-genome consisted of transposable elements,which are major contributors to the expansion of the sponge gourd genome.According to a phylogenetic analysis of conserved genes,the sponge gourd lineage diverged from the bitter gourd lineage approximately 41.6 million years ago.Additionally,many genes that respond to biotic and abiotic stresses were found to be lineage specific or expanded in the sponge gourd genome,as demonstrated by the presence of 462 NBS-LRR genes,a much greater number than are found in the genomes of other cucurbit species;these results are consistent with the high stress resistance of sponge gourd.Collectively,our study provides insights into genome evolution and serves as a valuable reference for the genetic improvement of sponge gourd.展开更多
Recent studies in Arabidopsis have revealed that some vq motif-containing proteins physically interact with WRKY transcription factors; however, their specific biological functions are still poorly understood. In this...Recent studies in Arabidopsis have revealed that some vq motif-containing proteins physically interact with WRKY transcription factors; however, their specific biological functions are still poorly understood. In this study, we confirmed the interaction between VQ1o and WRKY8, and show that VQ1o and WRKY8 formed a complex in the plant cell nucleus. Yeast two-hybrid analysis showed that the middle region of WRKY8 and the vq motif of vqlo are critical for their interaction, and that this interaction promotes the DNA-binding activity of WRKY8. Further investigation revealed that the VqlO protein was exclusively localized in the nucleus, and VQ1o was predominantly expressed in siliques, vQ1o expression was strongly responsive to the necrotrophic fungal pathogen, Botrytis cinerea and defense-relatedhormones. Phenotypic analysis showed that disruption of VQlo increased mutant plants susceptibility to the fungal pathogen B. cinerea, whereas constitutive-expres- sion of VQlo enhanced resistance to B. cinerea. Consis- tent with these findings, expression of the defenserelated PLANT DEFENSIN1.2 （PDFt2） gene was decreased in vqlo mutant plants, after B. cinerea infection, but increased in vQ1o-overexpressing transgenic plants. Taken together, our findings provide evidence that VQlo physically interacts with WRKY8 and positively regulates plant basal resistance against the necrotrophic fungal pathogen B. cinerea.展开更多
基金funded by the National Natural Science Foundation of China(31872093,31401865,31902011)the Science and Technology Program of Guangdong Province(2018B020202007,2019KJ110,2019A050507003,2019A050520002,2019A1515010723),the Science and Technology Program of Guangzhou of China(201807010033)the National Modern Agricultural Technology System Construction Project(CARS-25-G-36).
文摘Sponge gourd(Luffa cylindrica)is an important cultivated vegetable and medicinal plant in the family Cucurbitaceae.In this study,a draft genome sequence of the sponge gourd inbred line P93075 was analyzed.Using Illumina,PacBio,and 10×Genomics sequencing techniques as well as new assembly techniques such as FALCON and chromatin interaction mapping(Hi-C),a chromosome-scale genome of approximately 656.19 Mb,with an N50 scaffold length of 48.76 Mb,was generated.From this assembly,25,508 protein-coding gene loci were identified,and 63.81%of the whole-genome consisted of transposable elements,which are major contributors to the expansion of the sponge gourd genome.According to a phylogenetic analysis of conserved genes,the sponge gourd lineage diverged from the bitter gourd lineage approximately 41.6 million years ago.Additionally,many genes that respond to biotic and abiotic stresses were found to be lineage specific or expanded in the sponge gourd genome,as demonstrated by the presence of 462 NBS-LRR genes,a much greater number than are found in the genomes of other cucurbit species;these results are consistent with the high stress resistance of sponge gourd.Collectively,our study provides insights into genome evolution and serves as a valuable reference for the genetic improvement of sponge gourd.
基金supported by the National Natural Science Foundation of China(31671274,91417307)the Innovative Team of Yunnan Province(2014HC017)
文摘Recent studies in Arabidopsis have revealed that some vq motif-containing proteins physically interact with WRKY transcription factors; however, their specific biological functions are still poorly understood. In this study, we confirmed the interaction between VQ1o and WRKY8, and show that VQ1o and WRKY8 formed a complex in the plant cell nucleus. Yeast two-hybrid analysis showed that the middle region of WRKY8 and the vq motif of vqlo are critical for their interaction, and that this interaction promotes the DNA-binding activity of WRKY8. Further investigation revealed that the VqlO protein was exclusively localized in the nucleus, and VQ1o was predominantly expressed in siliques, vQ1o expression was strongly responsive to the necrotrophic fungal pathogen, Botrytis cinerea and defense-relatedhormones. Phenotypic analysis showed that disruption of VQlo increased mutant plants susceptibility to the fungal pathogen B. cinerea, whereas constitutive-expres- sion of VQlo enhanced resistance to B. cinerea. Consis- tent with these findings, expression of the defenserelated PLANT DEFENSIN1.2 （PDFt2） gene was decreased in vqlo mutant plants, after B. cinerea infection, but increased in vQ1o-overexpressing transgenic plants. Taken together, our findings provide evidence that VQlo physically interacts with WRKY8 and positively regulates plant basal resistance against the necrotrophic fungal pathogen B. cinerea.
