Assessment of Genetic Variation in Soybean (<i>Glycine max</i>) Accessions from International Gene Pools Using RAPD Markers: Comparison with the ISSR System

Soybean (Glycine max) is one of the most important crops in the world in terms of total production and usage. It is also among the least diverse species. The main objectives of the present study were to 1) assess the level of genetic variation among soybean (G. max) accessions from different countries using Random Amplified Polymorphic DNA (RAPD) markers and 2) compare Inter Simple Sequence Repeats (ISSR) and RAPD marker systems in detecting polymorphic loci in soybeans (G. max). Genomic DNAs from 108 soybeans (G. max) accessions from 11 different gene pools were analyzed using several ISSR and RAPD primers. The average level of polymorphic loci detected with the RAPD primers was 35%. The soybean accessions from the China, Netherlands, and Canada gene pools were the least genetically variable with 25%, 26%, and 30% of polymorphic loci, respectively. Accessions from Hungary (43%) and France (48%) showed the highest level of polymorphism based on the RAPD analysis. Overall, RAPD data revealed that the accessions from different countries are closely related with 64% genetic distance values below 0.40. The levels of polymorphic loci detected with the RAPD and ISSR marker systems were in general moderate and similar even if they target different regions of the genome. A combination of different marker systems that include RAPD/ISSR, microsatellites (SSR), and SNPs should provide the most accurate information on genetic variation of soybean (G. max) accessions.

Analysis of Adaptive Response of Maize (<i>Zea mays</i>) Varieties from DR-Congo to Water Stress

Maize production in tropical Africa is often negatively affected by drought. The main objectives of the present study were to 1) analyze the impact of water stress on the agro-morphological performance of two varieties of Quality Protein Maize (QPM) compared to two normal maize varieties and 2) assess their adaptive response in contrasting water environments. Agro-morphological responses to water deficiency of maize (Zea mays L.) were assessed in controlled experiments using four maize varieties, two normal maize (Zm725 and Mus1) and two quality protein maize (Mudishi1 and Mudishi3) varieties. They were subjected to three water regimes (100%, 60%, 30% water retention capacity) at the beginning of the bloom stage, using a Fischer block design with four replications. Significant differences (p < 0.05) among varieties, water regimes and their interactions for plant growth and production parameters were observed. Reduction of water supply to plants caused changes in aerial and underground plant growth. Plant stem height, foliar expansion, and root system development characterizing vegetative growth showed variation in varietal response to water regimes. Mus1 (normal maize variety) was the best adapted to variations in water regimes because they developed an important root volume to adapt to the effects of water deficit while maintaining their morphological and productive characteristics.

Decrease in Lysine and Tryptophan Content in S2 Inbred Lines from a Quality Protein Maize (QPM) Variety in a Breeding Program

Several countries in Africa, Latin America along with China have incorporated QPM in their Agricultural development plan. A new quality protein maize variety (QPM) was developed by breeders and farmers using the participatory breeding approach in the DR-Congo. It is adapted to all the maize growing regions in the country. Inbred lines from this new variety were produced for further development of maize synthetic populations. The main objective of the present study is to determine the level of amino acid changes in early generations of inbred lines. The results of the study revealed a significant decrease of 33% and 38% of tryptophan in S1 and S2 inbred lines compared to the original parental MUDISHI 3 population, respectively. There was a decrease of 15% of lysine in S2 inbred lines compared to the parental MUDISHI 3. Actually, S2 inbred lines of MUDISHI 3 contain similar level of lysine compared to the genetically improved normal maize (Salongo 2) that is currently released. The development of composite lines is recommended over synthetic populations to maintain the high levels of lysine and tryptophan along with other desirable agronomic characteristics since they involve the intercrossing of open pollinated varieties.

Genetic Variation in Picea mariana ×P. rubens Hybrid Populations Assessed with ISSR and RAPD Markers

Interspecific hybridization can result in significant shifts in allele frequencies. The objective of the present study was to assess the level of genetic variation in populations of P. mariana × P. rubens hybrids derived from artificial crosses. Progenies from backcross populations created through a series of controlled pollinations among P. mariana and P. rubens trees across the hybridization index were analyzed. Several Inter Simple Sequence Repeat (ISSR) and Random Amplified Polymorphic DNA (RAPD) primers were used to amplify genomic DNA samples from each population. ISSR primers produced from 30% to 52% polymorphic loci. The level of polymorphism was higher with RAPD markers, ranging from 57% to 76%. Overall, the two marker systems generated similar levels of polymorphic loci for P. mariana and P. rubens populations. No significant differences were found among the P. mariana × P. rubens populations analyzed and between the hybrids and the parental populations regardless of the molecular marker used. This confirms the genetic closeness of P. mariana and P. rubens species.

Expression of Genes Associated with Nickel Resistance in White Spruce (<i>Picea glauca</i>) under Nickel Stress: Analysis of AT2G16800 and <i>NRAMP</i>Genes

Heavy metals such nickel (Ni) can cause toxicity by 1) displacing essential components in the biomolecules, 2) blocking the functional group of molecules, or 3) modifying enzymes, proteins, the plasma membrane, and membrane transporters. The main objective of the present study was to investigate the effect of nickel (Ni) on gene expression of nitrate on gene expression with a focus on the genes coding for the high affinity Ni transporter family protein AT2G16800, and natural resistance-associated macrophage protein (NRAMP). Ni toxicity was assessed by treating seedlings with an aqueous solution of nickel nitrate salt [Ni(NO3)2] at the concentrations of 150 mg, 800 mg, and 1600 mg of nickel per 1 kg of dry soil. RT-qPCR was used to measure the expression of AT2G16800, and NRAMP genes in samples treated with nickel nitrates and controls. The results revealed that P. glauca is resistant to Ni based on lack of plant damage at all nickel concentrations. Ni has no effect on the expression of the AT2G16800 gene in needles or roots. However, it induced an upregulation of the NRAMP genes in roots at all the doses tested (150 mg/kg, 800 mg/kg, and 1600 mg/kg). On the other hand, Ni has no effect on the expression of the NRAMP gene in needle but the lowest dose of potassium (150 mg/kg) upregulated this gene in needle tissues.

Loss of Certified Maize (<i>Zea mays</i>L.) and Cowpea (<i>Vigna unguiculata</i>(L.) Walp.) Seed Viability during Storage in a Sub-Saharan Region: Analysis of Environmental Factors

The objective of this study was to characterize environment factors involved in loss of seed viability during storage in open granaries. The temperature and relative humidity of the granary as well as the equilibrium moisture content of seeds were determined monthly. Their effects on the loss of viability of maize (Zea mays L.) and cowpea (Vigna unguiculata (L.) Walp.) seeds were examined. The results showed that relative humidity levels > 65% associated with temperatures > 25°C (conditions in the open granary) do not guarantee safe storage of maize lots for a period of 9 to 12 months. Based on these data and the results of seed viability analysis, local environmental conditions in Gandajika (DR-Congo) and seed genetic background are the main factors for the rapid deterioration of seeds during storage. The germination rate correlated negatively with storage duration (-0.94) and temperature (-0.57) while it correlates positively with the relative humidity (0.58) for both lots of maize analyzed. The same trend was observed with the two-cowpea varieties studied (IT82D-889 and Diamant). Similar work using more varieties in other granaries is required to validate key factors involved in seed viability during storage in targeted regions.