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Metabarcoding of fecal DNA reveals the broad and flexible diet of a globally endangered bird
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作者 keyi tang Yufeng Wang +4 位作者 Mengling Wu Shufang Wang Changkun Fu Zhengwang Zhang Yiqiang Fu 《Current Zoology》 SCIE CAS CSCD 2023年第5期501-513,共13页
Knowing the diet of endangered wild animals is a prerequisite for species-specific conservation and habitat management.The Sichuan partridge Arborophila rufipectus is a globally endangered Galliformes species endemic ... Knowing the diet of endangered wild animals is a prerequisite for species-specific conservation and habitat management.The Sichuan partridge Arborophila rufipectus is a globally endangered Galliformes species endemic to the mountains of southwest China.Existing information on the diet of this species is biased and fragmented owing to traditional observation methods.Little is known about their dietary composition or how they respond to temporal variations in food resources throughout the year.In this study,a dietary analysis was performed on 6o fecal samples using DNA Metabarcoding of invertebrates and plants to determine the primary animal and plant components of the diet across 3 critical periods of adult life history(breeding,postbreeding wandering,and overwintering).Preys from the dipteran order,followed by the lepidopteran and ara-neaen spp.,were the predominant,animal-derived foods.Symplocos,Rubus,Celastrus,Holboellia,and Actinidia spp.supply a large abundance of fruits and seeds for this omnivorous bird.Substantial temporal dietary changes among the 3 periods and a general shift toward lower dietary diversity during the breeding season were observed,suggesting that the Sichuan partridge can adjust their diet according to the availability of food resources and their own needs.Characterizing the composition and seasonal changes in Sichuan partridge diets informs the habitat management of native flora(the plant taxa that can generate berries and seeds,such as Symplocos,Rubus,Celastrus,and Holboellia,which are likely of conservation interest)to achieve full life-cycle conservation. 展开更多
关键词 Arborophila rufipectus dietary composition endemic endangered species molecular diet analysis seasonal dietary variation Sichuan partridge
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染色体水平的大熊猫基因组揭示其亚种分化及进化特征
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作者 光宣敏 兰天明 +28 位作者 万秋红 黄炎 李洪 张明春 李仁贵 张志忠 雷颖虎 张玲 张和民 李德生 李晓平 李海盟 徐妍 乔麦菊 吴代福 唐刻意 赵鹏鹏 林剑青 Sunil KumarSahu 梁齐齐 江文凯 张丹辉 徐讯 刘心 Michael Lisby 杨焕明 Karsten Kristiansen 刘欢 方盛国 《Science Bulletin》 SCIE EI CSCD 2021年第19期2002-2013,M0004,共13页
现生的大熊猫包含两个亚种——四川亚种和秦岭亚种.本研究利用第三代基因组测序技术在染色体层次上组装了迄今为止最为完整的大熊猫两个亚种的基因组,且秦岭亚种的基因组为首次组装.通过对25只大熊猫的高深度测序和分化时间的估算,发现... 现生的大熊猫包含两个亚种——四川亚种和秦岭亚种.本研究利用第三代基因组测序技术在染色体层次上组装了迄今为止最为完整的大熊猫两个亚种的基因组,且秦岭亚种的基因组为首次组装.通过对25只大熊猫的高深度测序和分化时间的估算,发现大熊猫四川亚种和秦岭亚种之间的分化时间在距今约1.0到1.2万年前.进一步的比较基因组分析发现,大熊猫基因组上DACH2基因调控元件的特异性丢失以及SYT6基因的特异性位点突变是大熊猫较其他哺乳动物的繁殖率低的重要原因之一,而四川亚种IQCD基因正选择进化的结果则是四川亚种比秦岭亚种具有较高繁殖率的主要原因之一.最后,本研究发现大熊猫Hippo通路上诸基因的快速进化和一些基因调控元件上的特异性突变位点,可能是导致大熊猫具有较小的内脏器官以应对食性改变和减少能量代谢的适应性进化结果. 展开更多
关键词 突变位点 内脏器官 特异性位点 比较基因组分析 适应性进化 大熊猫 深度测序 亚种分化
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