Baccaurea motleyana(rambai)is underutilized fruits that are native to Malaysia,Indonesia and Thailand.In this study,a total of 54,779 unigenes identified from rambai transcriptome were used for simple sequence repeat(...Baccaurea motleyana(rambai)is underutilized fruits that are native to Malaysia,Indonesia and Thailand.In this study,a total of 54,779 unigenes identified from rambai transcriptome were used for simple sequence repeat(SSR)analysis by MIcroSAtellite(MISA).A total of 20,420 SSRs were found to be distributed within 37.27%of the total number of unigenes.Mononucleotide repeats represented the main type,accounting for 64.04%,followed by trinucleotide repeats(20.28%)and dinucleotide repeats(19.94%).Gene annotation to seven databases has a success ratio of 68.53%(National Center for Biotechnology Information(NCBI)protein sequences),53.68%(NCBI nucleotide sequences),27.43%(Kyoto Encyclopedia of Genes and Genome Ortholog),56.0%(SwissProt),52.44%(Protein family),53.99%(Gene Ontology)and 26.44%(Kluster of Orthologous Group).Further rambai SSRs were randomly selected and validated to B.motleyana(rambai),B.macrocarpa(tampoi),B.polyneura(jentik-jentik),B.ramiflora(pupor)and B.scortechinii(setambun).展开更多
文摘Baccaurea motleyana(rambai)is underutilized fruits that are native to Malaysia,Indonesia and Thailand.In this study,a total of 54,779 unigenes identified from rambai transcriptome were used for simple sequence repeat(SSR)analysis by MIcroSAtellite(MISA).A total of 20,420 SSRs were found to be distributed within 37.27%of the total number of unigenes.Mononucleotide repeats represented the main type,accounting for 64.04%,followed by trinucleotide repeats(20.28%)and dinucleotide repeats(19.94%).Gene annotation to seven databases has a success ratio of 68.53%(National Center for Biotechnology Information(NCBI)protein sequences),53.68%(NCBI nucleotide sequences),27.43%(Kyoto Encyclopedia of Genes and Genome Ortholog),56.0%(SwissProt),52.44%(Protein family),53.99%(Gene Ontology)and 26.44%(Kluster of Orthologous Group).Further rambai SSRs were randomly selected and validated to B.motleyana(rambai),B.macrocarpa(tampoi),B.polyneura(jentik-jentik),B.ramiflora(pupor)and B.scortechinii(setambun).
