The coupler is fundamental for a coupled model to realize complex interactions among component models.This paper focuses on the coupling process of Wave-Circulation(W-C) coupled model which consists of MASNUM(key labo...The coupler is fundamental for a coupled model to realize complex interactions among component models.This paper focuses on the coupling process of Wave-Circulation(W-C) coupled model which consists of MASNUM(key laboratory of marine science and numerical modeling wave model)and POM(Princeton Ocean Model).The current coupling module of this coupled model is based on the inefficient I/O file,which has already become a performance bottleneck especially when the coupled model utilizes a large number of processes.To improve the performance of the W-C model,a flexible coupling module based on the model coupling toolkit(MCT) is designed and implemented to replace the current I/O file coupling module in the coupled model.Empirical studies that we have carried out demonstrate that our online coupling module can dramatically improve the parallel performance of the coupled model.The online coupling module outperforms the I/O file coupling module.When processes increase to 96,the whole process of EXP-C takes only 695.8 seconds,which is only 58.8%of the execution time of EXP-F.Based on our experiments under 2D Parallel Decomposition(2DPD),we suggest setting parallel decomposition strategies automatically to component models in order to achieve high parallel efficiency.展开更多
为从分子水平上揭示青海省囊谦青牦牛的母系遗传多样性、群体结构及遗传背景,对31头囊谦青牦牛mtDNA D-loop区序列进行PCR扩增、测序和序列比对分析,确定序列变异位点和单倍型数目,计算单倍型多样度和核苷酸多样度大小,并进行系统发育...为从分子水平上揭示青海省囊谦青牦牛的母系遗传多样性、群体结构及遗传背景,对31头囊谦青牦牛mtDNA D-loop区序列进行PCR扩增、测序和序列比对分析,确定序列变异位点和单倍型数目,计算单倍型多样度和核苷酸多样度大小,并进行系统发育分析。结果表明,在囊谦青牦牛618 bp D-loop区序列分析中,共检测到34个多态位点,包括8个单一多态位点和26个简约信息位点。根据序列间核苷酸变异共确定了12种单倍型,单倍型多样度和核苷酸多样度分别为0.846±0.055和0.011±0.005。与野牦牛及我国其他18个家牦牛品种相比,囊谦青牦牛群体核苷酸多样度和单倍型多样度值均较低,表明囊谦青牦牛母系遗传多样性水平较低。以美洲野牛为外群构建的系统发育树结果显示,囊谦青牦牛群体的12种单倍型分布在3种单倍型组A、C、D中,且聚为2个大的分支,提示囊谦青牦牛由2个母系支系组成,拥有2个母系起源。综上,囊谦青牦牛群体母系遗传多样性较低,由2个母系支系组成,推测其有2个母系起源。展开更多
基金Supported by the National High Technology Research and Development Programme(No.2010AA012400,2010AA012302)the National Natural Science Foundation of China(No.61040048)
文摘The coupler is fundamental for a coupled model to realize complex interactions among component models.This paper focuses on the coupling process of Wave-Circulation(W-C) coupled model which consists of MASNUM(key laboratory of marine science and numerical modeling wave model)and POM(Princeton Ocean Model).The current coupling module of this coupled model is based on the inefficient I/O file,which has already become a performance bottleneck especially when the coupled model utilizes a large number of processes.To improve the performance of the W-C model,a flexible coupling module based on the model coupling toolkit(MCT) is designed and implemented to replace the current I/O file coupling module in the coupled model.Empirical studies that we have carried out demonstrate that our online coupling module can dramatically improve the parallel performance of the coupled model.The online coupling module outperforms the I/O file coupling module.When processes increase to 96,the whole process of EXP-C takes only 695.8 seconds,which is only 58.8%of the execution time of EXP-F.Based on our experiments under 2D Parallel Decomposition(2DPD),we suggest setting parallel decomposition strategies automatically to component models in order to achieve high parallel efficiency.
文摘为从分子水平上揭示青海省囊谦青牦牛的母系遗传多样性、群体结构及遗传背景,对31头囊谦青牦牛mtDNA D-loop区序列进行PCR扩增、测序和序列比对分析,确定序列变异位点和单倍型数目,计算单倍型多样度和核苷酸多样度大小,并进行系统发育分析。结果表明,在囊谦青牦牛618 bp D-loop区序列分析中,共检测到34个多态位点,包括8个单一多态位点和26个简约信息位点。根据序列间核苷酸变异共确定了12种单倍型,单倍型多样度和核苷酸多样度分别为0.846±0.055和0.011±0.005。与野牦牛及我国其他18个家牦牛品种相比,囊谦青牦牛群体核苷酸多样度和单倍型多样度值均较低,表明囊谦青牦牛母系遗传多样性水平较低。以美洲野牛为外群构建的系统发育树结果显示,囊谦青牦牛群体的12种单倍型分布在3种单倍型组A、C、D中,且聚为2个大的分支,提示囊谦青牦牛由2个母系支系组成,拥有2个母系起源。综上,囊谦青牦牛群体母系遗传多样性较低,由2个母系支系组成,推测其有2个母系起源。
