Di-and tri-methylation of lysine 36 on histone H3(H3K36me2/3)is catalysed by histone methyltransferase Set2,which plays an essential role in transcriptional regulation.Although there is a single H3K36 methyltransferas...Di-and tri-methylation of lysine 36 on histone H3(H3K36me2/3)is catalysed by histone methyltransferase Set2,which plays an essential role in transcriptional regulation.Although there is a single H3K36 methyltransferase in yeast and higher eukaryotes,two H3K36 methyltransferases,Ash1 and Set2,were present in many filamentous fungi.However,their roles in H3K36 methylation and transcriptional regulation remained unclear.Combined with methods of RNA-seq and ChIP-seq,we revealed that both Ash1 and Set2 are redundantly required for the full H3K36me2/3 activity in Magnaporthe oryzae,which causes the devastating worldwide rice blast disease.Ash1 and Set2 distinguish genomic H3K36me2/3-marked regions and are differentially associated with repressed and activated transcription,respectively.Furthermore,Ash1-catalysed H3K36me2 was co-localized with H3K27me3 at the chromatin,and Ash1 was required for the enrichment and transcriptional silencing of H3K27me3-occupied genes.With the different roles of Ash1 and Set2,in H3K36me2/3 enrichment and transcriptional regulation on the stress-responsive genes,they differentially respond to various stresses in M.oryzae.Overall,we reveal a novel mechanism by which two H3K36 methyltransferases catalyze H3K36me2/3 that differentially associate with transcriptional activities and contribute to enrichment of facultative heterochromatin in eukaryotes.展开更多
Programmed cell death ligand-1(PD-L1)is a T cell inhibitory immune checkpoint molecule that interacts with programmed cell death-1(PD-1)to promote immune escape of tumor cells.Compared with antibody therapies,small mo...Programmed cell death ligand-1(PD-L1)is a T cell inhibitory immune checkpoint molecule that interacts with programmed cell death-1(PD-1)to promote immune escape of tumor cells.Compared with antibody therapies,small molecule drugs show better prospects due to their advantages such as higher bioavailability,better tissue penetration,and reduced risk of immunogenicity.Here,we found that the small molecule demethylzeylasteral(Dem)can significantly downregulate the expression of PD-L1 in colorectal cancer cells and enhance the killing effect of T cells on tumor cells.Mechanistically,Dem binds to the deubiquitinating enzyme USP22 and promotes its degradation,resulting in increased ubiquitination and degradation of PD-L1 through the proteasome pathway.In addition,Dem increased the activity of cytotoxic T cells and reduced the number of myeloid-derived suppressor cells(MDSCs)and regulatory T cells(Tregs)in tumor-infiltrating lymphocytes(TILs),thereby activating the tumor immune microenvironment and inhibiting the growth of subcutaneous MC38 tumors in C57BL/6 mice.Moreover,we also found that the combination of Dem and CTLA4 antibodies can further improve the efficacy of antitumor therapy.Our study reveals the mechanism by which Dem promotes PD-L1 degradation and suggests that the combination of Dem and CTLA4 antibodies may improve the efficacy of immunotherapy.展开更多
Parkin,an E3 ubiquitin ligase,plays a role in maintaining mitochondrial homeostasis through targeting damaged mitochondria for mitophagy.Accumulating evidence suggests that the acetylation modification of the key mito...Parkin,an E3 ubiquitin ligase,plays a role in maintaining mitochondrial homeostasis through targeting damaged mitochondria for mitophagy.Accumulating evidence suggests that the acetylation modification of the key mitophagy machinery influences mitophagy level,but the underlying mechanism is poorly understood.Here,our study demonstrated that inhibition of histone deacetylase(HDAC)by treatment of HDACis activates mitophagy through mediating Parkin acetylation,leading to inhibition of cervical cancer cell proliferation.Bioinformatics analysis shows that Parkin expression is inversely correlated with HDAC2 expression in human cervical cancer,indicating the low acetylation level of Parkin.Using mass spectrometry,Parkin is identified to interact with two upstream molecules,acetylase acetyl-Co A acetyltransferase 1(ACAT1)and deacetylase HDAC2.Under treatment of suberoylanilide hydroxamic acid(SAHA),Parkin is acetylated at lysine residues 129,220 and 349,located in different domains of Parkin protein.In in vitro experiments,combined mutation of Parkin largely attenuate the interaction of Parkin with PTEN induced putative kinase 1(PINK1)and the function of Parkin in mitophagy induction and tumor suppression.In tumor xenografts,the expression of mutant Parkin impairs the tumor suppressive effect of Parkin and decreases the anticancer activity of SAHA.Our results reveal an acetylation-dependent regulatory mechanism governing Parkin in mitophagy and cervical carcinogenesis,which offers a new mitophagy modulation strategy for cancer therapy.展开更多
This study explores the effect of the initial axisymmetric wind structure and moisture on the predictability of the peak intensity of Typhoon Lekima(2019)through a 20-member ensemble forecast using the WRF model.The e...This study explores the effect of the initial axisymmetric wind structure and moisture on the predictability of the peak intensity of Typhoon Lekima(2019)through a 20-member ensemble forecast using the WRF model.The ensemble members are separated into Strong and Weak groups according to the maximum 10-m wind speed at 48 h.In our study of Lekima(2019),the initial intensity defined by maximum 10-m wind speed is not a good predictor of the intensity forecast.The peak intensity uncertainty is sensitive to the initial primary circulation outside the radius of maximum wind(RMW)and the initial secondary circulation.With greater absolute angular momentum(AAM)beyond the RMW directly related to stronger primary circulation,and stronger radial inflow,Strong group is found to have larger AAM import in lowlevel,helping to spin up the TC.Initial moisture in innercore is also critical to the intensity predictability through the development of inner-core convection.The aggregation and merger of convection,leading to the TC intensification,is influenced by both radial advection and gradient of system-scale vortex vorticity.Three sensitivity experiments are conducted to study the effect of model uncertainty in terms of model horizontal grid resolution on intensity forecast.The horizontal grid resolution greatly impacts the predictability of Lekima’s intensity,and the finer resolution is helpful to simulate the intensification and capture the observed peak value.展开更多
The initial condition accuracy is a major concern for tropical cyclone(TC)numerical forecast.The ensemble-based data assimilation techniques have shown great promise to initialize TC forecast.In addition to initial co...The initial condition accuracy is a major concern for tropical cyclone(TC)numerical forecast.The ensemble-based data assimilation techniques have shown great promise to initialize TC forecast.In addition to initial condition uncertainty,representing model errors(e.g.physics deficiencies)is another important issue in an ensemble forecasting system.To improve TC prediction from both deterministic and probabilistic standpoints,a Typhoon Ensemble Data Assimilation and Prediction System(TEDAPS)using an ensemble-based data assimilation scheme and a multi-physics approach based on Weather Research and Forecasting(WRF)model,has been developed in Shanghai Typhoon Institute and running realtime since 2015.Performance of TED APS in the prediction of track,intensity and associated disaster has been evaluated for the Western North Pacific TCs in the years of 2015-2018,and compared against the NCEP GEFS.TED APS produces markedly better intensity forecast by effectively reducing the weak biases and therefore the degree of underdispersion compared to GEFS.The errors of TED APS track forecasts are comparative with(slightly worse than)those of GEFS at longer(shorter)forecast leads.TEDAPS ensemble-mean exhibits advantage over deterministic forecast in track forecasts at long lead times,whereas this superiority is limited to typhoon or weaker TCs in intensity forecasts due to systematical underestimation.Four case-studies for three landfalling cyclones and one recurving cyclone demonstrate the capacities of TEDAPS in predicting some challenging TCs,as well as in capturing the forecast uncertainty and the potential threat from TC-associated hazards.展开更多
基金supported by the National Natural Science Foundation of China (32170192 and 32370200 to Z.T)National Youth Talent Support Program.
文摘Di-and tri-methylation of lysine 36 on histone H3(H3K36me2/3)is catalysed by histone methyltransferase Set2,which plays an essential role in transcriptional regulation.Although there is a single H3K36 methyltransferase in yeast and higher eukaryotes,two H3K36 methyltransferases,Ash1 and Set2,were present in many filamentous fungi.However,their roles in H3K36 methylation and transcriptional regulation remained unclear.Combined with methods of RNA-seq and ChIP-seq,we revealed that both Ash1 and Set2 are redundantly required for the full H3K36me2/3 activity in Magnaporthe oryzae,which causes the devastating worldwide rice blast disease.Ash1 and Set2 distinguish genomic H3K36me2/3-marked regions and are differentially associated with repressed and activated transcription,respectively.Furthermore,Ash1-catalysed H3K36me2 was co-localized with H3K27me3 at the chromatin,and Ash1 was required for the enrichment and transcriptional silencing of H3K27me3-occupied genes.With the different roles of Ash1 and Set2,in H3K36me2/3 enrichment and transcriptional regulation on the stress-responsive genes,they differentially respond to various stresses in M.oryzae.Overall,we reveal a novel mechanism by which two H3K36 methyltransferases catalyze H3K36me2/3 that differentially associate with transcriptional activities and contribute to enrichment of facultative heterochromatin in eukaryotes.
基金funded by the National Key Research and Development Program of China(2022YFC3502000)National Natural Science Foundation of China(Nos.82141203,82374086,and 82104459)+3 种基金Shanghai Municipal Science and Technology Major Project(ZD2021CY001,China)Innovation Team and Talents Cultivation Program of National Administration of Traditional Chinese Medicine(ZYYCXTDD-202004,China)Science and Technology Commission of Shanghai Municipality(20YF1458700,China)Organizational Key Research and Development Program of Shanghai University of Traditional Chinese Medicine(2023YZZ02,China)。
文摘Programmed cell death ligand-1(PD-L1)is a T cell inhibitory immune checkpoint molecule that interacts with programmed cell death-1(PD-1)to promote immune escape of tumor cells.Compared with antibody therapies,small molecule drugs show better prospects due to their advantages such as higher bioavailability,better tissue penetration,and reduced risk of immunogenicity.Here,we found that the small molecule demethylzeylasteral(Dem)can significantly downregulate the expression of PD-L1 in colorectal cancer cells and enhance the killing effect of T cells on tumor cells.Mechanistically,Dem binds to the deubiquitinating enzyme USP22 and promotes its degradation,resulting in increased ubiquitination and degradation of PD-L1 through the proteasome pathway.In addition,Dem increased the activity of cytotoxic T cells and reduced the number of myeloid-derived suppressor cells(MDSCs)and regulatory T cells(Tregs)in tumor-infiltrating lymphocytes(TILs),thereby activating the tumor immune microenvironment and inhibiting the growth of subcutaneous MC38 tumors in C57BL/6 mice.Moreover,we also found that the combination of Dem and CTLA4 antibodies can further improve the efficacy of antitumor therapy.Our study reveals the mechanism by which Dem promotes PD-L1 degradation and suggests that the combination of Dem and CTLA4 antibodies may improve the efficacy of immunotherapy.
基金supported by research grants from Zhejiang Provincial Natural Science Foundation(LR18H160002,China)National Natural Science Foundation of China(32070740)+3 种基金Zhejiang Provincial Program in Medicine and Health Sciences and Technology(2018KY010)Zhejiang Provincial Outstanding Talent Project of Ten Thousand Talents ProgramZhejiang Provincial Qianjiang Talents ProgramZhejiang Provincial High-Level Innovative Health Talents Program to Dr.Jianbin Zhang。
文摘Parkin,an E3 ubiquitin ligase,plays a role in maintaining mitochondrial homeostasis through targeting damaged mitochondria for mitophagy.Accumulating evidence suggests that the acetylation modification of the key mitophagy machinery influences mitophagy level,but the underlying mechanism is poorly understood.Here,our study demonstrated that inhibition of histone deacetylase(HDAC)by treatment of HDACis activates mitophagy through mediating Parkin acetylation,leading to inhibition of cervical cancer cell proliferation.Bioinformatics analysis shows that Parkin expression is inversely correlated with HDAC2 expression in human cervical cancer,indicating the low acetylation level of Parkin.Using mass spectrometry,Parkin is identified to interact with two upstream molecules,acetylase acetyl-Co A acetyltransferase 1(ACAT1)and deacetylase HDAC2.Under treatment of suberoylanilide hydroxamic acid(SAHA),Parkin is acetylated at lysine residues 129,220 and 349,located in different domains of Parkin protein.In in vitro experiments,combined mutation of Parkin largely attenuate the interaction of Parkin with PTEN induced putative kinase 1(PINK1)and the function of Parkin in mitophagy induction and tumor suppression.In tumor xenografts,the expression of mutant Parkin impairs the tumor suppressive effect of Parkin and decreases the anticancer activity of SAHA.Our results reveal an acetylation-dependent regulatory mechanism governing Parkin in mitophagy and cervical carcinogenesis,which offers a new mitophagy modulation strategy for cancer therapy.
基金supported by National Key R&D Program of China(No.2018YFC1506404)National Natural Science Foundation of China(Grant No.41575107)+3 种基金in part by Shanghai Sailing Program(No.19YF1458700)the Research Program from Science and Technology Committee of Shanghai(No.19dz1200101)Science and Technology Project of Shanghai Meteorological Service(No.QM202006)Typhoon Scientific and Technological Innovation Group of Shanghai Meteorological Service.
文摘This study explores the effect of the initial axisymmetric wind structure and moisture on the predictability of the peak intensity of Typhoon Lekima(2019)through a 20-member ensemble forecast using the WRF model.The ensemble members are separated into Strong and Weak groups according to the maximum 10-m wind speed at 48 h.In our study of Lekima(2019),the initial intensity defined by maximum 10-m wind speed is not a good predictor of the intensity forecast.The peak intensity uncertainty is sensitive to the initial primary circulation outside the radius of maximum wind(RMW)and the initial secondary circulation.With greater absolute angular momentum(AAM)beyond the RMW directly related to stronger primary circulation,and stronger radial inflow,Strong group is found to have larger AAM import in lowlevel,helping to spin up the TC.Initial moisture in innercore is also critical to the intensity predictability through the development of inner-core convection.The aggregation and merger of convection,leading to the TC intensification,is influenced by both radial advection and gradient of system-scale vortex vorticity.Three sensitivity experiments are conducted to study the effect of model uncertainty in terms of model horizontal grid resolution on intensity forecast.The horizontal grid resolution greatly impacts the predictability of Lekima’s intensity,and the finer resolution is helpful to simulate the intensification and capture the observed peak value.
基金The authors would like to thank Dr.Lina Bai in STI for providing the best-track data.This research was primarily supported by National Key R&D Program of China(Grant No.2018YFC1506404)the National Basic Research Program of China(Grant No.2015CB452806)+4 种基金National Natural Science Foundation of China(Grant No.41575107)in part by Shanghai Sailing Program(Grant No.19YF1458700)Scientific Research Program of Shanghai Science&Technology Commission(Grant No.19dz1200101)National Programme on Global Change and Air-Sea Interaction(Grant No.GASI-IPOVAI-04)Shanghai Typhoon Innovation Team grants to Shanghai Typhoon Institute.
文摘The initial condition accuracy is a major concern for tropical cyclone(TC)numerical forecast.The ensemble-based data assimilation techniques have shown great promise to initialize TC forecast.In addition to initial condition uncertainty,representing model errors(e.g.physics deficiencies)is another important issue in an ensemble forecasting system.To improve TC prediction from both deterministic and probabilistic standpoints,a Typhoon Ensemble Data Assimilation and Prediction System(TEDAPS)using an ensemble-based data assimilation scheme and a multi-physics approach based on Weather Research and Forecasting(WRF)model,has been developed in Shanghai Typhoon Institute and running realtime since 2015.Performance of TED APS in the prediction of track,intensity and associated disaster has been evaluated for the Western North Pacific TCs in the years of 2015-2018,and compared against the NCEP GEFS.TED APS produces markedly better intensity forecast by effectively reducing the weak biases and therefore the degree of underdispersion compared to GEFS.The errors of TED APS track forecasts are comparative with(slightly worse than)those of GEFS at longer(shorter)forecast leads.TEDAPS ensemble-mean exhibits advantage over deterministic forecast in track forecasts at long lead times,whereas this superiority is limited to typhoon or weaker TCs in intensity forecasts due to systematical underestimation.Four case-studies for three landfalling cyclones and one recurving cyclone demonstrate the capacities of TEDAPS in predicting some challenging TCs,as well as in capturing the forecast uncertainty and the potential threat from TC-associated hazards.