Jujube(Ziziphus jujuba Mill.)is an important perennial fruit tree with a range of interesting horticultural traits.It was domesticated from wild jujube(Ziziphus acidojujuba),but the genomic variation dynamics and gene...Jujube(Ziziphus jujuba Mill.)is an important perennial fruit tree with a range of interesting horticultural traits.It was domesticated from wild jujube(Ziziphus acidojujuba),but the genomic variation dynamics and genetic changes underlying its horticultural traits during domestication are poorly understood.Here,we report a comprehensive genome variation map based on the resequencing of 350 accessions,including wild,semi-wild and cultivated jujube plants,at a>15×depth.Using the combination of a genome-wide association study(GWAS)and selective sweep analysis,we identified several candidate genes potentially involved in regulating seven domestication traits in jujube.For fruit shape and kernel shape,we integrated the GWAS approach with transcriptome profiling data,expression analysis and the transgenic validation of a candidate gene to identify a causal gene,ZjFS3,which encodes an ethyleneresponsive transcription factor.Similarly,we identified a candidate gene for bearing-shoot length and the number of leaves per bearing shoot and two candidate genes for the seed-setting rate using GWAS.In the selective sweep analysis,we also discovered several putative genes for the presence of prickles on bearing shoots and the postharvest shelf life of fleshy fruits.This study outlines the genetic basis of jujube domestication and evolution and provides a rich genomic resource for mining other horticulturally important genes in jujube.展开更多
Grain size is a determinant of rice grain yield.In plants,mitochondria supply energy for cellular metabolism via the mitochondrial electron transport chain.Here we report that OsNDB2,which encodes a putative rotenone-...Grain size is a determinant of rice grain yield.In plants,mitochondria supply energy for cellular metabolism via the mitochondrial electron transport chain.Here we report that OsNDB2,which encodes a putative rotenone-insensitive typeⅡNAD(P)H dehydrogenase(ND),negatively regulates grain size and weight in rice.Six ND members representing three major types of rice were identified,and the predicted OsNDB2 protein was localized to mitochondria.Contents of OsNDB2 transcripts were higher in young panicles and leaf blades.OsNDB2 overexpression reduced grain length,grain width,and 1000-grain weight and moderately influenced plant height,while knockout of OsNDB2 increased grain size and 1000-grain weight.Allelic mutations of OsNDB2 were associated with diverse grain appearances.Cellular observations revealed that variations in grain size of transgenic lines were caused by change in cell expansion but not cell proliferation in spikelet hulls.Our study sheds light on OsNDB2 function and provides a new potential breeding approach for increasing rice grain size and weight.展开更多
Studying in the United States and ob-taining a respectable Ph.D.degree is prob-ably an aspiration of many Chinese collegestudents.The strict Ph.D.training and edu-cation at a good US school will undoubtedlybuild a sol...Studying in the United States and ob-taining a respectable Ph.D.degree is prob-ably an aspiration of many Chinese collegestudents.The strict Ph.D.training and edu-cation at a good US school will undoubtedlybuild a solid basis for one's academic careerdevelopment.展开更多
基金supported by the Key Science and Technology Program of Henan Province(192102110058 and 202102110046)the Key Research Projects of Henan Higher Education Institutions(17A180030).
文摘Jujube(Ziziphus jujuba Mill.)is an important perennial fruit tree with a range of interesting horticultural traits.It was domesticated from wild jujube(Ziziphus acidojujuba),but the genomic variation dynamics and genetic changes underlying its horticultural traits during domestication are poorly understood.Here,we report a comprehensive genome variation map based on the resequencing of 350 accessions,including wild,semi-wild and cultivated jujube plants,at a>15×depth.Using the combination of a genome-wide association study(GWAS)and selective sweep analysis,we identified several candidate genes potentially involved in regulating seven domestication traits in jujube.For fruit shape and kernel shape,we integrated the GWAS approach with transcriptome profiling data,expression analysis and the transgenic validation of a candidate gene to identify a causal gene,ZjFS3,which encodes an ethyleneresponsive transcription factor.Similarly,we identified a candidate gene for bearing-shoot length and the number of leaves per bearing shoot and two candidate genes for the seed-setting rate using GWAS.In the selective sweep analysis,we also discovered several putative genes for the presence of prickles on bearing shoots and the postharvest shelf life of fleshy fruits.This study outlines the genetic basis of jujube domestication and evolution and provides a rich genomic resource for mining other horticulturally important genes in jujube.
基金supported by Luoyang Key Science and Technology Innovation Program(2101016A)。
文摘Grain size is a determinant of rice grain yield.In plants,mitochondria supply energy for cellular metabolism via the mitochondrial electron transport chain.Here we report that OsNDB2,which encodes a putative rotenone-insensitive typeⅡNAD(P)H dehydrogenase(ND),negatively regulates grain size and weight in rice.Six ND members representing three major types of rice were identified,and the predicted OsNDB2 protein was localized to mitochondria.Contents of OsNDB2 transcripts were higher in young panicles and leaf blades.OsNDB2 overexpression reduced grain length,grain width,and 1000-grain weight and moderately influenced plant height,while knockout of OsNDB2 increased grain size and 1000-grain weight.Allelic mutations of OsNDB2 were associated with diverse grain appearances.Cellular observations revealed that variations in grain size of transgenic lines were caused by change in cell expansion but not cell proliferation in spikelet hulls.Our study sheds light on OsNDB2 function and provides a new potential breeding approach for increasing rice grain size and weight.
文摘Studying in the United States and ob-taining a respectable Ph.D.degree is prob-ably an aspiration of many Chinese collegestudents.The strict Ph.D.training and edu-cation at a good US school will undoubtedlybuild a solid basis for one's academic careerdevelopment.
