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Safety and Effectiveness of Stent-Assisted Coil Embolization for Ruptured Intracranial Aneurysm
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作者 Bibang Ndong Virginio Shichao Zhang +8 位作者 Wenfeng Feng mingzhou li Gang Wang Huibin Kang Yunyu Wen Yu Ye Mesi Ndong Edo Euvaldo Songtao Qi Guozhong Zhang 《Open Journal of Modern Neurosurgery》 2024年第4期275-283,共9页
Background: It has been conclusively established that intracranial aneurysms measuring a diameter below 7 mm pose a minimal risk of rupture. Conversely, those exhibiting irregular morphology or featuring the presence ... Background: It has been conclusively established that intracranial aneurysms measuring a diameter below 7 mm pose a minimal risk of rupture. Conversely, those exhibiting irregular morphology or featuring the presence of a sac necessitate a more stringent and rigorous management approach. Objective: The primary aim of this study is to delve into the morphological features of ruptured aneurysms situated in distinct regions of the brain. Furthermore, we endeavor to assess the degree of safety and efficacy associated with stent-assisted embolization as a treatment modality for these ruptured aneurysms. Methods: This retrospective study encompassed a cohort of 467 patients who presented with intracranial ruptured aneurysms and were diagnosed through a combination of computed tomography (CT) and digital subtraction angiography (DSA) at Nanfang Hospital of Southern Medical University, spanning from January 2009 to December 2019. The following clinical parameters were meticulously recorded: aneurysm height, width, neck measurements, immediate Raymond grade assessments, and any perioperative complications experienced. Results: Within the study population, the average dimensions of ruptured aneurysms were found to be 4.26 ± 2.10 mm (width), 4.86 ± 2.38 mm (height), and 4.04 ± 1.87 mm (neck). Categorically, the most prevalent types of aneurysms were 170 cases of anterior communicating artery aneurysms (accounting for 36.4%), followed by 161 cases of posterior communicating artery aneurysms (34.5%), 56 cases of middle cerebral artery aneurysms (12.0%), 13 cases of anterior cerebral artery aneurysms (2.8%), 45 cases of paraclinoid aneurysms (9.6%), 6 cases of superior pituitary artery aneurysms (1.3%), 7 cases of anterior choroidal artery aneurysms (1.5%), and 9 cases of vertebrobasilar artery aneurysms (2.0%). Notably, 18 patients (3.9%) presented with ruptured aneurysms coexisting with ascus. Regarding treatment approaches, 228 cases (48.8%) underwent stent-assisted embolization, 234 cases (50.1%) received coils embolization, and 5 cases (1.1%) were treated with the dual-catheter technique. Immediately post-treatment, 422 patients (90.4%) attained a Raymond Class I status, with a procedure-related complication rate of 0.9%. Importantly, no statistically significant differences were observed in the incidence of perioperative complications across the three distinct treatment groups (P = 0.505). Conclusion: The outcomes of this study affirm the safety and efficacy of stent-assisted embolization as a treatment modality for ruptured aneurysms. 展开更多
关键词 Ruptured Intracranial Aneurysm Interventional Therapy Stent Assisted Embolization
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Exploring the dynamic three-dimensional chromatin architecture and transcriptional landscape in goose liver tissues underlying metabolic adaptations induced by a high-fat diet
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作者 Guangliang Gao Rui liu +9 位作者 Silu Hu Mengnan He Jiaman Zhang Dengfeng Gao Jing li Jiwei Hu Jiwen Wang Qigui Wang mingzhou li Long Jin 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2024年第4期1494-1511,共18页
Background Goose, descendants of migratory ancestors, have undergone extensive selective breeding, resulting in their remarkable ability to accumulate fat in the liver and exhibit a high tolerance for significant ener... Background Goose, descendants of migratory ancestors, have undergone extensive selective breeding, resulting in their remarkable ability to accumulate fat in the liver and exhibit a high tolerance for significant energy intake. As a result, goose offers an excellent model for studying obesity, metabolic disorders, and liver diseases in mammals. Although the impact of the three-dimensional arrangement of chromatin within the cell nucleus on gene expression and transcriptional regulation is widely acknowledged, the precise functions of chromatin architecture reorganization during fat deposition in goose liver tissues still need to be fully comprehended.Results In this study, geese exhibited more pronounced changes in the liver index and triglyceride(TG) content following the consumption of the high-fat diet(HFD) than mice without significant signs of inflammation. Additionally, we performed comprehensive analyses on 10 goose liver tissues(5 HFD, 5 normal), including generating highresolution maps of chromatin architecture, conducting whole-genome gene expression profiling, and identifying H3K27ac peaks in the livers of geese and mice subjected to the HFD. Our results unveiled a multiscale restructuring of chromatin architecture, encompassing Compartment A/B, topologically associated domains, and interactions between promoters and enhancers. The dynamism of the three-dimensional genome architecture, prompted by the HFD, assumed a pivotal role in the transcriptional regulation of crucial genes. Furthermore, we identified genes that regulate chromatin conformation changes, contributing to the metabolic adaptation process of lipid deposition and hepatic fat changes in geese in response to excessive energy intake. Moreover, we conducted a cross-species analysis comparing geese and mice exposed to the HFD, revealing unique characteristics specific to the goose liver compared to a mouse. These chromatin conformation changes help elucidate the observed characteristics of fat deposition and hepatic fat regulation in geese under conditions of excessive energy intake.Conclusions We examined the dynamic modifications in three-dimensional chromatin architecture and gene expression induced by an HFD in goose liver tissues. We conducted a cross-species analysis comparing that of mice. Our results contribute significant insights into the chromatin architecture of goose liver tissues, offering a novel perspective for investigating mammal liver diseases. 展开更多
关键词 Compartment A/B Goose fatty liver Promoter-enhancer interactions Regulation of gene expression
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A cell transcriptomic profile p ovides insights into adipocytes of porcine mammary gland across development
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作者 Yongliang Fan Long Jin +11 位作者 Zhiping He Tiantian Wei Tingting Luo Jiaman Zhang Can liu Changjiu Dai Chao A Yan liang Xuan Tao Xuebin Lv Yiren Gu mingzhou li 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2024年第1期182-200,共19页
Background Studying the composition and developmental mechanisms in mammary gland is crucial for healthy growth of newborns. The mammary gland is inherently heterogeneous, and its physiological function dependents on ... Background Studying the composition and developmental mechanisms in mammary gland is crucial for healthy growth of newborns. The mammary gland is inherently heterogeneous, and its physiological function dependents on the gene expression of multiple cell types. Most studies focused on epithelial cells, disregarding the role of neighboring adipocytes.Results Here, we constructed the largest transcriptomic dataset of porcine mammary gland cells thus far. The dataset captured 126,829 high-quality nuclei from physiological mammary glands across five developmental stages(d 90 of gestation, G90;d 0 after lactation, L0;d 20 after lactation, L20;2 d post natural involution, PI2;7 d post natural involution, PI7). Seven cell types were identified, including epithelial cells, adipocytes, endothelial cells, fibroblasts cells, immune cells, myoepithelial cells and precursor cells. Our data indicate that mammary glands at different developmental stages have distinct phenotypic and transcriptional signatures. During late gestation(G90), the differentiation and proliferation of adipocytes were inhibited. Meanwhile, partly epithelial cells were completely differentiated. Pseudo-time analysis showed that epithelial cells undergo three stages to achieve lactation, including cellular differentiation, hormone sensing, and metabolic activation. During lactation(L0 and L20), adipocytes area accounts for less than 0.5% of mammary glands. To maintain their own survival, the adipocyte exhibited a poorly differentiated state and a proliferative capacity. Epithelial cells initiate lactation upon hormonal stimulation. After fulfilling lactation mission, their undergo physiological death under high intensity lactation. Interestingly, the physiological dead cells seem to be actively cleared by immune cells via CCL21-ACKR4 pathway. This biological process may be an important mechanism for maintaining homeostasis of the mammary gland. During natural involution(PI2 and PI7), epithelial cell populations dedifferentiate into mesenchymal stem cells to maintain the lactation potential of mammary glands for the next lactation cycle.Conclusion The molecular mechanisms of dedifferentiation, proliferation and redifferentiation of adipocytes and epithelial cells were revealed from late pregnancy to natural involution. This cell transcriptomic profile constitutes an essential reference for future studies in the development and remodeling of the mammary gland at different stages. 展开更多
关键词 ADIPOCYTES Cell–cell interaction DEVELOPMENT Mammary gland snRNA-seq
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Phase Ⅱ study of apatinib in combination with oral vinorelbine in heavily pretreated HER2-negative metastatic breast cancer and clinical implications of monitoring ctDNA 被引量:4
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作者 Anjie Zhu Peng Yuan +17 位作者 Nanlin Hu mingzhou li Wenmiao Wang Xue Wang Jian Yue Jiayu Wang Yang Luo Fei Ma Pin Zhang Qing li Binghe Xu Shanbo Cao Giuseppe lippi Yoichi Naito Mohammed A.Osman Gustavo N.Marta Gianluca Franceschini Armando Orlandi 《Cancer Biology & Medicine》 SCIE CAS CSCD 2021年第3期875-887,共13页
Objective:Apatinib is an oral TKI targeting VEGFR-2.Single-agent apatinib treatment has been shown to produce an objective response in patients with pretreated m BC.Oral vinorelbine also holds promise as a treatment o... Objective:Apatinib is an oral TKI targeting VEGFR-2.Single-agent apatinib treatment has been shown to produce an objective response in patients with pretreated m BC.Oral vinorelbine also holds promise as a treatment of choice in patients with m BC.This study aimed to investigate the efficacy and safety of the oral vinorelbine-apatinib combination in patients with pretreated m BC.In addition,we detected gene variants in ct DNA to explore the therapeutic implications.Methods:This study enrolled patients with HER2-negative m BC who were pretreated with anthracycline/taxanes.Patients were treated with apatinib at 500 mg/425 mg daily plus oral vinorelbine 60 mg/m2 on days 1,8,and 15 of every cycle(3 weeks).The primary endpoint was PFS.The secondary endpoints were ORR,CBR,OS,and safety.Patients eligible for ct DNA detection were evaluated before and during treatment.Results:Forty patients were enrolled.The median PFS was 5.2 months(95%CI,3.4–7.0 months),and the median OS was 17.4 months(95%CI,8.0–27.0 months).The ORR was 17.1%(6/35),and the CBR was 45.7%(16/35).The most common AEs included gastrointestinal reaction,myelosuppression,and hypertension.In 20 patients,ct DNA was detected at baseline and during treatment.A significant difference was found in PFS for undetected vs.detected baseline ct DNA(13.9 months vs.3.6 months,P=0.018).Conclusions:All-oral therapy with apatinib plus vinorelbine displayed objective efficacy in patients with heavily pretreated HER2-negative m BC,with acceptable and manageable toxicity profiles.Patients with no gene variant detected and lower variant allele frequencies in ct DNA at baseline showed longer PFS. 展开更多
关键词 Metastatic breast cancer apatinib oral vinorelbine ct DNA
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Effects of two different glycoprotein platelet Ⅱb/Ⅲa inhibitors and the clinical endpoints in patients with intracranial Pipeline flow diverter implant 被引量:6
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作者 Qiao Deng Shichao Zhang +2 位作者 mingzhou li Guozhong Zhang Wenfeng Feng 《Journal of Interventional Medicine》 2020年第4期174-179,共6页
Objective:To compare the antiplatelet effect and major adverse cerebrovascular events of Pipeline for intracranial aneurysms using glycoproteinⅡb/Ⅲa antagonists(GPI)eptifibatide and tirofiban.Methods:Retrospective a... Objective:To compare the antiplatelet effect and major adverse cerebrovascular events of Pipeline for intracranial aneurysms using glycoproteinⅡb/Ⅲa antagonists(GPI)eptifibatide and tirofiban.Methods:Retrospective analysis of relevant data of patients using GPIs combined with oral antiplatelet therapy in Nanfang Hospital of Southern Medical University from December 2017 to December 2019.The study was approved by the ethics Committee of Nanfang Hospital of Southern Medical University.According to the random use of GPIs drugs,they were assigned to the eptifibatide group and tirofiban group.Basic data,platelet inhibition rates at baseline,24 h and 72 h after administration,short-term major adverse cerebrovascular events,and bleeding complications were compared between the two groups.Results:A total of 47 patients were included in this study,including 24 patients in eptifibatide group and 23 patients in tirofiban group.There was no significant difference in average age(53.75 vs.53.91 years)and body mass index(BMI)(24.39 vs.22.73 kg/m2)between eptifibatide group and tirofiban group.There was no significant difference in coagulation factor function(R),fibrinogen function(K),fibrinolysis function(EPL),comprehensive coagulation index(Cl),arachidonic acid pathway inhibition rate(AA%)and adenosine diphosphate inhibition rate(ADP%).However,the baseline level of residual platelet function MA(ADP)in eptifibatide group was significantly higher than that in tirofiban group(50.79 vs.35.29 mm,P=0.0026).There was a statistical difference in the platelet aggregation function MA(65.38 vs.62.54 mm,p=0.0442),the rate of spontaneous hemorrhagic stroke(4.3%vs.0%)and the rate of asymptomatic minor bleeding(26.08%vs.4.1%)in the two groups(P<0.05).Conclusion:Both eptifibatide and tirofiban can effectively inhibit platelets,but the effect of etifeptide is better than that of tirofiban in preventing intracranial microhemorrhage and asymptomatic cerebral infarction. 展开更多
关键词 EPTIFIBATIDE Tirofiban Cerebral hemorrhage Flow guiding device
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Composite structure Al_(2)O_(3)/Al_(2)O_(3)-YAG:Ce/YAG ceramics with high color spatial uniformity for white laser lighting 被引量:2
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作者 Pengfei Sang Le Zhang +7 位作者 Jian Kang mingzhou li Shiwei Chen Peng Yang Bingheng Sun Yang li Wieslaw Strek Hao Chen 《Journal of Advanced Ceramics》 SCIE EI CAS CSCD 2024年第2期189-197,共9页
Composite ceramic phosphor(CCP)is a candidate light-conversion material to obtain the high-quality laser lighting source.Phosphors based on the transmissive configuration model could not simultaneously meet the requir... Composite ceramic phosphor(CCP)is a candidate light-conversion material to obtain the high-quality laser lighting source.Phosphors based on the transmissive configuration model could not simultaneously meet the requirements of angular color uniformity and high thermal stability.In this study,a novel composite structure ceramic was designed,including Al_(2)O_(3)-YAG:Ce/YAG layered ceramic with a size of 1 mm×1 mm for lighting,and Al_(2)O_(3) ceramic(φ=16.0 mm)was used as the wrapping material due to its outstanding thermal stability.The prepared ceramics exhibited excellent thermal performance and no yellow ring phenomenon.Through this design,we achieved the match of the intensity distribution of the blue and yellow lights,resulting in a high angular color uniformity of 0.9 with a view angle of±80°.All ceramics showed no luminous saturation phenomenon,even the laser power density was increased up to 47.51 W/mm^(2).A high-brightness white-light source with a luminous flux of 618 lm,a luminous efficiency of 126 lm/W,a CCT of 6615 K,and a CRI of 69.9 was obtained in the transmissive configuration.In particular,the surface temperature of the ceramic was as low as 74.1℃ under a high laser radiation(47.51 W/mm^(2)).These results indicate that Al_(2)O_(3)/Al_(2)O_(3)-YAG:Ce/YAG composite structure ceramic is a promising luminescent material in the high-power laser lighting applications. 展开更多
关键词 Al_(2)O_(3)/Al_(2)O_(3)-YAG:Ce/YAG angular color uniformity high thermal stability high-power laser lighting
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Intense and Superflat White Laser with 700-nm 3-dB Bandwidth and 1-mJ Pulse Energy Enabling Single-Shot Subpicosecond Pulse Laser Spectroscopy 被引量:1
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作者 lihong Hong Haiyao Yang +6 位作者 liqiang liu mingzhou li Yuanyuan liu Baoqin Chen Huakang Yu Wenbo Ju Zhi-Yuan li 《Research》 SCIE EI CSCD 2024年第2期319-327,共9页
An optical spectrometer is a basic spectral instrument that probes microscopic physical and chemical properties of macroscopic objects but generally suffers from difficulty in broadband time-resolved measurement.In th... An optical spectrometer is a basic spectral instrument that probes microscopic physical and chemical properties of macroscopic objects but generally suffers from difficulty in broadband time-resolved measurement.In this work,we report the creation of ultrabroadband white-light laser with a 3-dB bandwidth covering 385 to 1,080 nm,pulse energy of 1.07 mJ,and pulse duration of several hundred femtoseconds by passing 3-mJ pulse energy,50-fs pulse duration Ti:Sapphire pulse laser through a cascaded fused silica plate and chirped periodically poled lithium niobate crystal.We utilize this unprecedented superflat,ultrabroadband,and intense femtosecond laser light source to build a single-shot(i.e.,single-pulse)subpicosecond pulse laser ultraviolet-visible-near-infrared spectrometer and successfully measure various atomic and molecular absorption spectra.The single-shot ultrafast spectrometer may open up a frontier to monitor simultaneously the ultrafast dynamics of multiple physical and chemical processes in various microscopic systems. 展开更多
关键词 PULSE utilize FRONTIER
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Local TSH/TSHR signaling promotes CD8^(+) T cell exhaustion and immune evasion in colorectal carcinoma
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作者 Sisi Zeng Huiling Hu +19 位作者 Zhiyang li Qi Hu Rong Shen mingzhou li Yunshi liang Zuokang Mao Yandong Zhang Wanqi Zhan Qin Zhu Feifei Wang Jianbiao Xiao Bohan Xu Guanglong liu Yanan Wang Bingsong li Shaowan Xu Zhaowen Zhang Ceng Zhang Zhizhang Wang li liang 《Cancer Communications》 SCIE 2024年第11期1287-1310,共24页
Dysfunction of CD8^(+)T cells in the tumor microenvironment(TME)contributes to tumor immune escape and immunotherapy tolerance.The effects of hormones such as leptin,steroid hormones,and glucocorticoids on T cell func... Dysfunction of CD8^(+)T cells in the tumor microenvironment(TME)contributes to tumor immune escape and immunotherapy tolerance.The effects of hormones such as leptin,steroid hormones,and glucocorticoids on T cell function have been reported previously.However,the mechanism underlying thyroid-stimulating hormone(TSH)/thyroid-stimulating hormone receptor(TSHR)signaling in CD8^(+)T cell exhaustion and tumor immune evasion remain poorly understood.This study was aimed at investigating the effects of TSH/TSHR signaling on the function of CD8^(+)T cells and immune evasion in colorectal cancer(CRC).Methods:TSHR expression levels in CD8^(+)T cells were assessed with immunofluorescence and flow cytometry.Functional investigations involved manipulation of TSHR expression in cellular and mouse models to study its role in CD8^(+)T cells.Mechanistic insights were mainly gained through RNAsequencing,Western blotting,chromatin immunoprecipitation and luciferase activity assay.Immunofluorescence,flow cytometry and Western blotting were used to investigate the source of TSH and TSHR in CRC tissues.Results:TSHR was highly expressed in cancer cells and CD8^(+)T cells in CRC tissues.TSH/TSHR signaling was identified as the intrinsic pathway promoting CD8^(+)T cell exhaustion.Conditional deletion of TSHR in CD8^(+)tumorinfiltrating lymphocytes(TILs)improved effector differentiation and suppressed the expression of immune checkpoint receptors such as programmed cell death 1(PD-1)and hepatitis A virus cellular receptor 2(HAVCR2 or TIM3)through the protein kinase A(PKA)/cAMP-response element binding protein(CREB)signaling pathway.CRC cells secreted TSHR via exosomes to increase the TSHR level in CD8^(+)T cells,resulting in immunosuppression in the TME.Myeloid-derived suppressor cells(MDSCs)was the main source of TSH within the TME.Low expression of TSHR in CRC was a predictor of immunotherapy response.Conclusions:The present findings highlighted the role of endogenous TSH/TSHR signaling in CD8^(+)T cell exhaustion and immune evasion in CRC.TSHR may be suitable as a predictive and therapeutic biomarker in CRC immunotherapy. 展开更多
关键词 Thyroid stimulating hormone Thyroid stimulating hormone receptor Colorectal carcinoma T cell exhaustion Immune evasion
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热休克蛋白-90α在乳腺癌诊断和疗效监测及复发预测中的临床价值 被引量:14
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作者 胡南林 李明舟 +7 位作者 朱安婕 王佳玉 罗扬 马飞 李青 张频 徐兵河 袁芃 《中国肿瘤临床》 CAS CSCD 北大核心 2018年第23期1206-1209,共4页
目的:探讨乳腺癌及其他恶性肿瘤患者血浆中的热休克蛋白-90α(heat shock protein-90α,HSP-90α)表达水平差异,及在乳腺癌诊断、监测疗效、预测复发中的临床价值。方法:选取2016年6月至2016年9月就诊于中国医学科学院肿瘤医院615例女... 目的:探讨乳腺癌及其他恶性肿瘤患者血浆中的热休克蛋白-90α(heat shock protein-90α,HSP-90α)表达水平差异,及在乳腺癌诊断、监测疗效、预测复发中的临床价值。方法:选取2016年6月至2016年9月就诊于中国医学科学院肿瘤医院615例女性患者的临床病理资料,分为试验组399例和对照组216例。试验组均为乳腺癌患者,再分为静态组289例和动态组110例,静态组根据TNM分期、组织学类型和分子分型等进行分类分析,动态组用于动态疗效分析;对照组包括健康对照人群103例,乳腺良性肿瘤患者51例及非乳腺系统恶性肿瘤患者62例。采用酶联免疫法检测HSP-90α表达水平。利用ROC曲线分析确定血浆中HSP-90α表达水平作为乳腺癌诊断、复发的截断值,采用Wilcoxon符号秩检验及Kruskal-Wallis检验分析各因素与HSP-90α表达水平的相关性。结果:乳腺癌患者血浆中的HSP-90α表达水平显著升高(P<0.001),且乳腺癌不同分子亚型患者血浆中的HSP-90α表达水平无显著性差异(P>0.05)。选取HSP-90α表达水平为59.7 ng/m L与43.22 ng/m L作为诊断乳腺癌和预测肿瘤复发的临界值时,其曲线下面积(area under curve,AUC)分别为0.834与0.877,灵敏度和特异度分别为90.3%和78.6%与95.7%和74.5%。新辅助治疗有效者及手术前后患者血浆中的HSP-90α表达水平明显下降(P<0.05),结论:乳腺癌患者血浆中的HSP-90α表达水平显著升高,对乳腺癌诊断、疗效判断及复发预测具有一定的价值。 展开更多
关键词 乳腺癌 热休克蛋白-90α 诊断 复发
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Myomaker和Myomerger调控成肌细胞融合的分子机制 被引量:1
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作者 朱艳 张进威 +4 位作者 齐婧 李学伟 陈磊 李明洲 马继登 《遗传》 CAS CSCD 北大核心 2019年第12期1110-1118,共9页
骨骼肌形成是一个复杂的生理过程,主要涉及肌源性干细胞增殖形成成肌细胞,进而分化、融合形成多核肌管。研究发现,有多种蛋白参与成肌细胞融合过程,但它们均不具有肌肉特异性。近年来,两种肌肉特异性膜蛋白Myomaker和Myomerger先后被发... 骨骼肌形成是一个复杂的生理过程,主要涉及肌源性干细胞增殖形成成肌细胞,进而分化、融合形成多核肌管。研究发现,有多种蛋白参与成肌细胞融合过程,但它们均不具有肌肉特异性。近年来,两种肌肉特异性膜蛋白Myomaker和Myomerger先后被发现和鉴定,它们能协调促进成肌细胞融合,从而参与骨骼肌形成过程。本文对成肌过程中Myomaker和Myomerger的表达模式、功能域等研究现状及其参与成肌细胞的融合机制进行了综述,旨在为深入研究骨骼肌形成过程及治疗肌细胞融合相关疾病提供参考信息。 展开更多
关键词 骨骼肌形成 Myomaker Myomerger 细胞融合
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基于Hi-C技术哺乳动物三维基因组研究进展 被引量:8
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作者 宁椿游 何梦楠 +3 位作者 唐茜子 朱庆 李明洲 李地艳 《遗传》 CAS CSCD 北大核心 2019年第3期215-233,共19页
基因组DNA在细胞核中并不是呈线性的一字排列,而是以三维结构高度折叠并浓缩成染色质的方式储存于核内,具有特定的高级空间结构和构象。高通量染色体构象捕获(high-througnput chromosome conformationcapture, Hi-C)技术于2009年首次... 基因组DNA在细胞核中并不是呈线性的一字排列,而是以三维结构高度折叠并浓缩成染色质的方式储存于核内,具有特定的高级空间结构和构象。高通量染色体构象捕获(high-througnput chromosome conformationcapture, Hi-C)技术于2009年首次被提出,目前已得到大规模运用,使得人们对于三维基因组学有了更深刻的认识。研究表明,哺乳动物基因组三维层级结构单元由大到小依次为染色体疆域(chromosome territory, CT)、染色质区室(chromatin compartment A/B)、拓扑关联结构域(topological associated domain, TAD)和染色质环(chromatin loop),这些层级结构单元在基因转录和表达调控过程中发挥着重要作用。本文基于Hi-C技术从染色质的三维层级结构划分、构象单元作用以及三维基因组在发育、疾病等方面的应用进行阐述,旨在为更深入地了解哺乳动物三维基因组学研究提供参考。 展开更多
关键词 三维基因组学 染色质空间构象 Hi-C技术 基因表达调控
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Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues 被引量:4
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作者 Jiaman Zhang Pengliang liu +5 位作者 Mengnan He Yujie Wang Hua Kui Long Jin Diyan li mingzhou li 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2022年第4期1011-1027,共17页
Background:A growing body of evidence has revealed that the mammalian genome is organized into hierarchical layers that are closely correlated with and may even be causally linked with variations in gene expression.Re... Background:A growing body of evidence has revealed that the mammalian genome is organized into hierarchical layers that are closely correlated with and may even be causally linked with variations in gene expression.Recent studies have characterized chromatin organization in various porcine tissues and cell types and compared them among species and during the early development of pigs.However,how chromatin organization differs among pig breeds is poorly understood.Results:In this study,we investigated the 3D genome organization and performed transcriptome characterization of two adipose depots(upper layer of backfat[ULB]and greater omentum[GOM])in wild boars and Bama pigs;the latter is a typical indigenous pig in China.We found that over 95%of the A/B compartments and topologically associating domains(TADs)are stable between wild boars and Bama pigs.In contrast,more than 70%of promoterenhancer interactions(PEIs)are dynamic and widespread,involving over a thousand genes.Alterations in chromatin structure are associated with changes in the expression of genes that are involved in widespread biological functions such as basic cellular functions,endocrine function,energy metabolism and the immune response.Approximately 95%and 97%of the genes associated with reorganized A/B compartments and PEIs in the two pig breeds differed between GOM and ULB,respectively.Conclusions:We reported 3D genome organization in adipose depots from different pig breeds.In a comparison of Bama pigs and wild boar,large-scale compartments and TADs were mostly conserved,while fine-scale PEIs were extensively reorganized.The chromatin architecture in these two pig breeds was reorganized in an adipose depotspecific manner.These results contribute to determining the regulatory mechanism of phenotypic differences between Bama pigs and wild boar. 展开更多
关键词 3D genome organization A/B compartments Adipose tissues PEI Pig breeds TAD
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Lnc-RAP3对小鼠3T3-L1前脂肪细胞分化的影响 被引量:4
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作者 李欢 冯晋川 +3 位作者 李贵林 王讯 李明洲 刘海峰 《遗传》 CAS CSCD 北大核心 2018年第9期758-766,共9页
长链非编码RNA(long non-coding RNA,lnc RNA)是一类长度大于200nt、没有长开放阅读框架但往往具有m RNA结构特征的RNA,可以在转录及转录后水平参与基因的表达调控。近年来,有研究证实lnc RNA对脂肪生成具有重要作用。Lnc-RAP3位于小鼠(... 长链非编码RNA(long non-coding RNA,lnc RNA)是一类长度大于200nt、没有长开放阅读框架但往往具有m RNA结构特征的RNA,可以在转录及转录后水平参与基因的表达调控。近年来,有研究证实lnc RNA对脂肪生成具有重要作用。Lnc-RAP3位于小鼠(Mus musculus)17号染色体,其表达量在小鼠脂肪细胞分化前后呈现显著差异,但其具体的生物学功能尚不清楚。为探讨lnc-RAP3在小鼠3T3-L1前脂肪细胞成脂分化中的作用,本文首先构建了lnc-RAP3的真核表达载体pc DNA3.1-RAP3,利用脂质体将pc DNA3.1-RAP3和人工合成的lnc-RAP3的si RNAs分别转染3T3-L1前脂肪细胞,并对转染后的细胞进行诱导分化,并通过油红O染色、q RT-PCR检测成脂分化相关基因表达等方法比较过表达和敲降lnc-RAP3对3T3-L1前脂肪细胞成脂分化的影响。结果显示,过表达lnc-RAP3后,细胞内脂滴聚集显著减少(P<0.05),在诱导分化第0 d、2 d和4 d时C/EBPα、Glut4、PPARγ、LPL和FAS的表达水平均呈显著(P<0.05)或极显著(P<0.01)下降;敲降lnc-RAP3后,细胞内脂滴聚集显著增多(P<0.05),同时在诱导分化第0 d、2 d时PPARγ、LPL、C/EBPα、FAS和Glut4的表达水平呈显著(P<0.05)或极显著(P<0.01)升高。本研究结果表明,lnc-RAP3可能通过影响成脂分化相关基因的表达来抑制3T3-L1前脂肪细胞的成脂分化。 展开更多
关键词 lnc-RAP3 3T3-L1前脂肪细胞 成脂分化
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Identification of Epsin1 as a regulator for hepatic lipid and glucose metabolism
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作者 Xiaohua Huang Long Jin +7 位作者 Zhengfeng Fang lianqiang Che Yan lin Shengyu Xu Yong Zhuo mingzhou li De Wu Bin Feng 《Genes & Diseases》 SCIE CSCD 2023年第1期72-75,共4页
Obesity related non-alcoholic fatty liver disease(NAFLD),which can progress to steatohepatitis and insulin resistance,has become a major chronic liver disease worldwide.1 As an adaptor of clathrin-mediated endocytosis... Obesity related non-alcoholic fatty liver disease(NAFLD),which can progress to steatohepatitis and insulin resistance,has become a major chronic liver disease worldwide.1 As an adaptor of clathrin-mediated endocytosis,Epsin1 plays a role in many diseases,including tumors,atherosclerosis and diabetic wound healing. 展开更多
关键词 METABOLISM HEALING WOUND
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甲状腺结节人工智能自动分割和分类系统的建立和验证
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作者 伯小皖 郭乐杭 +2 位作者 余松远 李明宙 孙丽萍 《中华医学超声杂志(电子版)》 CSCD 北大核心 2024年第3期304-309,共6页
目的开发一种能自动分割和诊断甲状腺结节良恶性的人工智能(AI)系统。方法收集872例2017年10月至2018年10月于上海市第十人民医院行穿刺活检确认的甲状腺结节患者的超声图像,利用AI方法对这些图片进行处理、检测等并最终反馈结果,建立A... 目的开发一种能自动分割和诊断甲状腺结节良恶性的人工智能(AI)系统。方法收集872例2017年10月至2018年10月于上海市第十人民医院行穿刺活检确认的甲状腺结节患者的超声图像,利用AI方法对这些图片进行处理、检测等并最终反馈结果,建立AI系统,并对AI系统进行验证及内部测试。按照6∶2∶2的比例将所有收集的超声图像分为训练集、验证集和内部测试集进行初步验证测试。纳入外院209例甲状腺结节患者(共209个结节)超声图像再次进行验证,以穿刺或外科手术病理结果为诊断标准,计算低年资医师组、高年资医师组和AI系统诊断甲状腺结节良恶性的敏感度、特异度、准确性、阳性预测值、阴性预测值,并绘制三者诊断甲状腺结节良恶性的受试者操作特征曲线,计算曲线下面积(AUC),采用Delong检验比较AI系统与低年资医师组、高年资医师组的诊断效能。结果AI系统结节自动分割率在验证集、内部测试集和外部测试集上分别为98.8%、98.9%、98.1%。在外部测试集中,AI系统的诊断敏感度、特异度及准确性与低年资医师组、高年资医师组比较,差异均无统计学意义(P均>0.017)。而AI系统诊断甲状腺结节良恶性的AUC优于低年资医师组[0.885(95%CI:0.842~0.929)vs 0.823(95%CI:0.771~0.875),P=0.022],而与高年资医师组[0.932(95%CI:0.897~0.966)]类似(P=0.096)。结论本研究开发了一种能自动分割及诊断甲状腺结节良恶性的AI系统,其在外部测试集中具有较高的诊断效能,有望辅助低年资医师更准确鉴别甲状腺结节良恶性。 展开更多
关键词 人工智能 甲状腺结节 超声
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Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data 被引量:12
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作者 Xiaomeng Tian Ran li +10 位作者 Weiwei Fu Yan li Xihong Wang Ming li Duo Du Qianzi Tang Yudong Cai Yiming Long Yue Zhao mingzhou li Yu Jiang 《Science China(Life Sciences)》 SCIE CAS CSCD 2020年第5期750-763,共14页
Pigs were domesticated independently in the Near East and China,indicating that a single reference genome from one individual is unable to represent the full spectrum of divergent sequences in pigs worldwide.Therefore... Pigs were domesticated independently in the Near East and China,indicating that a single reference genome from one individual is unable to represent the full spectrum of divergent sequences in pigs worldwide.Therefore,12 de novo pig assemblies from Eurasia were compared in this study to identify the missing sequences from the reference genome.As a result,72.5 Mb of nonredundant sequences(~3% of the genome)were found to be absent from the reference genome(Sscrofa11.1)and were defined as pan-sequences.Of the pan-sequences,9.0 Mb were dominant in Chinese pigs,in contrast with their low frequency in European pigs.One sequence dominant in Chinese pigs contained the complete genic region of the tazarotene-induced gene 3(TIG3)gene which is involved in fatty acid metabolism.Using flanking sequences and Hi-C based methods,27.7% of the sequences could be anchored to the reference genome.The supplementation of these sequences could contribute to the accurate interpretation of the 3D chromatin structure.A web-based pan-genome database was further provided to serve as a primary resource for exploration of genetic diversity and promote pig breeding and biomedical research. 展开更多
关键词 PAN-GENOME PIG reference genome 3D chromatin structure presence-absence variation
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Alterations in cecal microbiota of Jinhua piglets fostered by a Yorkshire sow 被引量:4
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作者 lingjin Xian Ying li +14 位作者 Zhi Jiang Jideng Ma Long Jin Lei Chen Chaowei Zhou Jie Zhang Yingkai liu li Zhu An-an Jiang Guoqing Tang Jian Xiao Jinyong Wang Bo Zeng mingzhou li Xuewei li 《Chinese Science Bulletin》 SCIE EI CAS 2014年第32期4304-4311,共8页
Gut microbiota play important roles in host health and diseases.Several factors,in particular antibiotics,affect the gut microbiota of pigs.Cross-fostering has been applied as a regular practice to equalize litter siz... Gut microbiota play important roles in host health and diseases.Several factors,in particular antibiotics,affect the gut microbiota of pigs.Cross-fostering has been applied as a regular practice to equalize litter size,reduce pre-weaning mortality and increase body weight.However,the effect of cross-fostering on cecal microbiota is unclear.In this study,we fostered three Jinhua pigs to a Yorkshire sow.The fostered Jinhua piglets grew significantly faster than their biological siblings.To explore whether the cecal microbiota of piglets will alter during fostering,we characterized the cecal microbiota of allpiglets by examining the V3 hypervariable region of 16S rDNA.We observed altered cecal microbiota in these piglets using the Illumina HiSeq 2000 platform,and this was accompanied with an increase in growth rate after fostering.The relative abundance of Bacteroidetes in the fostered Jinhua piglets was decreased compared with their biological siblings,although still higher in comparison with their new littermates.Beta-diversity analysis also showed that the cecal microbiota of the adopted Jinhua piglets differed from their biological siblings with a shift toward their step-siblings.Our data show that cecal microbiota of piglets were altered after cross-fostering while the growth rate increased. 展开更多
关键词 盲肠菌群 金华猪 仔猪 母猪 培育 盲肠微生物 培养过程 RDNA序列
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Genome-wide analysis reveals selection for Chinese Rongchang pigs 被引量:2
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作者 Lei CHEN Shilin TIAN +11 位作者 Long JIN Zongyi GUO Dan ZHU Lan JING Tiandong CHE Qianzi TANG Siqing CHEN liang ZHANG Tinghuan ZHANG Zuohua liU Jinyong WANG mingzhou li 《Frontiers of Agricultural Science and Engineering》 2017年第3期319-326,共8页
Livestock have undergone domestication and consequently strong selective pressure on genes or genomic regions that control desirable traits. To identify selection signatures in the genome of Chinese Rongchang pigs, we... Livestock have undergone domestication and consequently strong selective pressure on genes or genomic regions that control desirable traits. To identify selection signatures in the genome of Chinese Rongchang pigs, we generated a total of about 170 Gb of DNA sequence data with about 6.4-fold coverage for each of six female individuals. By combining these data with the publically available genome data of 10 Asian wild boars,we identified 449 protein-coding genes with selection signatures in Rongchang pigs, which are mainly involved in growth and hormone binding, nervous system development, and drug metabolism. The accelerated evolution of these genes may contribute to the dramatic phenotypic differences between Rongchang pigs and Chinese wild boars. This study illustrated how domestication and subsequent artificial selection have shaped patterns of genetic variation in Rongchang pigs and provides valuable genetic resources that can enhance the use of pigs in agricultural production and biomedical studies. 展开更多
关键词 DOMESTICATION GENOME PIG RE-SEQUENCING SELECTION
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Intense Two-Octave Ultraviolet-Visible-Infrared Supercontinuum Laser via High-Efficiency One-Octave Second-Harmonic Generation 被引量:2
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作者 mingzhou li lihong Hong Zhi-Yuan li 《Research》 EI CAS CSCD 2022年第4期179-187,共9页
Intense ultrabroadband laser source of high pulse energy has attracted more and more attention in physics,chemistry,biology,material science,and other disciplines.We report design and realization of a chirped periodic... Intense ultrabroadband laser source of high pulse energy has attracted more and more attention in physics,chemistry,biology,material science,and other disciplines.We report design and realization of a chirped periodically poled lithium niobate nonlinear crystal that supports ultrabroadband second-harmonic generation covering 350-850 nm by implementing simultaneously up to 12 orders of quasiphase matching against ultrabroadband pump laser covering 700-1700 nm with an average high conversion efficiency of about 25.8%.We obtain a flat supercontinuum spectrum with a 10 dB bandwidth covering more than one octave(about 375-1200 nm)and 20 dB bandwidth covering more than two octaves(about 350-1500 nm)in the ultraviolet-visible-infrared regime and having intense energy as 0.17 mJ per pulse through synergic action of second-order and third-order nonlinearity under pump of 0.48 mJ per pulse Ti:sapphire femtosecond laser.This scheme would provide a promising method for the construction of supercontinuum laser source with extremely broad bandwidth,large pulse energy,and high peak power for a variety of basic science and high technology applications. 展开更多
关键词 PUMP EFFICIENCY INFRARED
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Snapshot of Structural Variations in the Tibetan Wild Boar Genome at Single-Nucleotide Resolution 被引量:1
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作者 Lei Chen Long Jin +9 位作者 mingzhou li Shilin Tian Tiandong Che Qianzi Tang Jing Lan Zhi Jiang Ruiqiang li Yiren Gu Xuewei li Jinyong Wang 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2014年第12期653-657,共5页
Genomic structural variations (SVs), particularly insertions, deletions and inversions, can contribute to the heterogeneity of millions of nucleotides within a genome, and are likely to make an important contributio... Genomic structural variations (SVs), particularly insertions, deletions and inversions, can contribute to the heterogeneity of millions of nucleotides within a genome, and are likely to make an important contribution to biological diversity and phenotypic variation (Alkan et al., 2011; Bickhart and Liu, 2014). With the rapid development of the next-generation sequencing technologies and the new assembly methodolo- gies, the multiple de novo assemblies of genomes within a species allow researchers to explore more detailed SV maps (Li et al., 2011). Compared with the traditional read depth algorithm using the whole-genome resequencing approach and array-based technologies (Baker, 2012; Wang et al., 2012; 展开更多
关键词 gene Snapshot of Structural Variations in the Tibetan Wild Boar Genome at Single-Nucleotide Resolution
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