The Lathyrus cicera transcriptome was analysed in response to rust(Uromyces pisi)infection to develop novel molecular breeding tools with potential for genetic mapping of resistance in this robust orphan legume specie...The Lathyrus cicera transcriptome was analysed in response to rust(Uromyces pisi)infection to develop novel molecular breeding tools with potential for genetic mapping of resistance in this robust orphan legume species.One RNA-seq library each was generated from control and rust-inoculated leaves from two L.cicera genotypes with contrasting quantitative resistance,de novo assembled into contigs and sequence polymorphisms were identified.In toto,19,224 SNPs differentiate the susceptible from the partially resistant genotype’s transcriptome.In addition,we developed and tested 341 expressed E-SSR markers from the contigs,of which 60.7%varied between the two L.cicera genotypes.A first L.cicera linkage map was created using part of the developed markers in a RIL population from the cross of the two genotypes.This map contains 307 markers,covered 724.2 cM and is organised in 7 major and 2 minor linkage groups,with an average mapping interval of 2.4 cM.The genic markers also enabled us to compare their position in L.cicera map with the physical position of the same markers mapped on Medicago truncatula genome,highlighting a high macrosyntenic conservation between both species.This study provides a large new set of genic polymorphic molecular markers with potential for mapping rust resistances.It represents the first step towards genomics-assisted precision breeding in L.cicera.展开更多
基金This work was supported by the project LEGATO(FP7 grant agreement n°613551),the Spanish grant AGL2017-82907-R and the Portuguese Grants PTDC/AGR-TEC/0992/2014 and UID/Multi/04551/2013 by Fundação para a Ciência e TecnologiaN.F.A.and M.C.V.P.were supported by Fundação para a Ciência e Tecnologia(SFRH/BD/44357/2008 and IF/01337/2014 Research Contract by IF 2014 program,respectively).
文摘The Lathyrus cicera transcriptome was analysed in response to rust(Uromyces pisi)infection to develop novel molecular breeding tools with potential for genetic mapping of resistance in this robust orphan legume species.One RNA-seq library each was generated from control and rust-inoculated leaves from two L.cicera genotypes with contrasting quantitative resistance,de novo assembled into contigs and sequence polymorphisms were identified.In toto,19,224 SNPs differentiate the susceptible from the partially resistant genotype’s transcriptome.In addition,we developed and tested 341 expressed E-SSR markers from the contigs,of which 60.7%varied between the two L.cicera genotypes.A first L.cicera linkage map was created using part of the developed markers in a RIL population from the cross of the two genotypes.This map contains 307 markers,covered 724.2 cM and is organised in 7 major and 2 minor linkage groups,with an average mapping interval of 2.4 cM.The genic markers also enabled us to compare their position in L.cicera map with the physical position of the same markers mapped on Medicago truncatula genome,highlighting a high macrosyntenic conservation between both species.This study provides a large new set of genic polymorphic molecular markers with potential for mapping rust resistances.It represents the first step towards genomics-assisted precision breeding in L.cicera.
