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A High-Performing and Cost-Effective SNP Genotyping Method Using rhPCR and Universal Reporters 被引量:3
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作者 Kristin Beltz Daniel Tsang +16 位作者 Junzhou Wang scott rose Yun Bao Yu Wang Katelyn Larkin Susan Rupp Daniela Schrepfer Krishnalekha Datta Keith Gunderson Chris Sailor scott Hansen Joseph Dobosy Lynette Lewis Aurita Menezes Joseph Walder Mark Behlke Caifu Chen 《Advances in Bioscience and Biotechnology》 2018年第9期497-512,共16页
We have developed a novel dual enzyme chemistry called rhAmp&reg;SNP genotyping based on RNase H2-dependent PCR (rhPCR) that provides high signal and specificity for SNP analysis. rhAmp SNP genotyping combines a u... We have developed a novel dual enzyme chemistry called rhAmp&reg;SNP genotyping based on RNase H2-dependent PCR (rhPCR) that provides high signal and specificity for SNP analysis. rhAmp SNP genotyping combines a unique two-enzyme system with 3’ end blocked DNA-RNA hybrid primers to interrogate SNP loci. Activation of the blocked primers occurs upon hybridization to its perfectly matched target, which eliminates or greatly reduces primer dimers. A thermostable hot-start RNase H2 cleaves the primer immediately 5’ of the ribose sugar, releasing the blocking group and allowing primer extension. PCR specificity is further improved with the use of a mutant Taq DNA polymerase, resulting in improved allelic discrimination. Signal generation is obtained using a universal reporter system which requires only two reporter probes for any bi-allelic SNP. 1000 randomly selected SNPs were chosen to validate the 95% design rate of the design pipeline. A subsampling of 130 human SNP targets was tested and achieved a 98% call rate, and 99% call accuracy. rhAmp SNP genotyping assays are compatible with various qPCR instruments including QuantStudioTM 7 Flex, CFX384TM, IntelliQube&reg;, and Biomark HDTM. In comparison to TaqMan&reg;, rhAmp SNP genotyping assays show higher signal (Rn) and greater cluster separation, resulting in more reliable SNP genotyping performance. The rhAmp SNP genotyping solution is suited for high-throughput SNP genotyping applications in humans and plants. 展开更多
关键词 SNP GENOTYPING RNASE H2 rhPCR rhAmp SNP GENOTYPING Universal REPORTER
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Evolution and challenges of DNS-based GDMs
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作者 Zheng Wang Jim Huang scott rose 《Digital Communications and Networks》 SCIE 2018年第4期235-243,共9页
DNS-based server redirecting is considered the most popular means of deploying CDNs. However, with the inaeasing use of i"emol:e DNS, DNS-based CDNs face a great challenge in performance degradation. To address t... DNS-based server redirecting is considered the most popular means of deploying CDNs. However, with the inaeasing use of i"emol:e DNS, DNS-based CDNs face a great challenge in performance degradation. To address this issue, encouraging progress has been made in both industry and research communities. In this article,state-of- art solutions for the remote DNS problem are discussed at first. Next, privacy concerns about DNS-based CDNs, including client location as well as redirection privacy, are identified and a representative solution is summarized. Finally, the solution is compared to those in prior works under different measures, and a discussion on DNS-based CDN applications is provided. A model is also established to deepen the underst;anding of CDN performance. We believe that this survey will shed light on the application of DNS-based CDNs, and it is expected to provide design guidelines to CDN service providers. 展开更多
关键词 Index TERMS Content delivery network DNS-Based server redirecting Remote DNS DNS PRIVACY
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