As well as being a popular vegetable crop worldwide,waxy corn represents an important amylopectin source,but little is known about its breeding history and flavor characteristics.In this study,through comparative-omic...As well as being a popular vegetable crop worldwide,waxy corn represents an important amylopectin source,but little is known about its breeding history and flavor characteristics.In this study,through comparative-omic analyses between 318 diverse waxy corn and 507 representative field corn inbred lines we revealed that many metabolic pathways and genes exhibited selection characteristics during the breeding history of waxy corn,contributing to the divergence between waxy and field corn.We showed that waxy corn is not only altered in its glutinous property but also its sweetness,aroma,and palatability are all significantly affected.A substantial proportion(43%)of flavor-related metabolites have pleiotropic effects,affecting both flavor and yield characteristics,and 27%of these metabolites are related to antagonistic outcomes on yield and flavor.Furthermore,through multiple concrete examples,we demonstrated how yield and quality are coordinately or antagonistically regulated at the genetic level.In particular,some sweet molecules,such as DIMBOA and raffinose,which do not participate in the starch biosynthesis pathway,were identified as potential targets for breeding a new type of“sweet-waxy”corn.Taken together,our findings shed light on the historical selection of waxy corn and demonstrate the genetic and metabolic basis of waxy corn flavor,collectively providing valuable resources and knowledge for future crop breeding for improved nutritional quality.展开更多
Structural variations (SVs) are mutations with large-scale changes (generally>50 bp) in the genome. SVs are major sources of the genetic diversity of organisms and thus are of high relevance to phenotype variations...Structural variations (SVs) are mutations with large-scale changes (generally>50 bp) in the genome. SVs are major sources of the genetic diversity of organisms and thus are of high relevance to phenotype variations, gene dosage and evolutionary genetics. Except detecting SVs through comparative genetic analyses, dozens of software had been developed based on the alignment of short-reads to a single linear genome in the past decades (Guan and Sung, 2016).展开更多
基金Biological Breeding-National Science and Technology Major Project(2023ZD04073)National Natural Science Foundation of China(32321005,32101773,31971964)+1 种基金China Postdoctoral Science Foundation(2022M711280)Science and Technology Program of Guangdong Province(2023A0505090005).
文摘As well as being a popular vegetable crop worldwide,waxy corn represents an important amylopectin source,but little is known about its breeding history and flavor characteristics.In this study,through comparative-omic analyses between 318 diverse waxy corn and 507 representative field corn inbred lines we revealed that many metabolic pathways and genes exhibited selection characteristics during the breeding history of waxy corn,contributing to the divergence between waxy and field corn.We showed that waxy corn is not only altered in its glutinous property but also its sweetness,aroma,and palatability are all significantly affected.A substantial proportion(43%)of flavor-related metabolites have pleiotropic effects,affecting both flavor and yield characteristics,and 27%of these metabolites are related to antagonistic outcomes on yield and flavor.Furthermore,through multiple concrete examples,we demonstrated how yield and quality are coordinately or antagonistically regulated at the genetic level.In particular,some sweet molecules,such as DIMBOA and raffinose,which do not participate in the starch biosynthesis pathway,were identified as potential targets for breeding a new type of“sweet-waxy”corn.Taken together,our findings shed light on the historical selection of waxy corn and demonstrate the genetic and metabolic basis of waxy corn flavor,collectively providing valuable resources and knowledge for future crop breeding for improved nutritional quality.
文摘Structural variations (SVs) are mutations with large-scale changes (generally>50 bp) in the genome. SVs are major sources of the genetic diversity of organisms and thus are of high relevance to phenotype variations, gene dosage and evolutionary genetics. Except detecting SVs through comparative genetic analyses, dozens of software had been developed based on the alignment of short-reads to a single linear genome in the past decades (Guan and Sung, 2016).
