Next-generation sequencing(NGS) technology is capable of sequencing millions or billions of DNA molecules simultaneously.Therefore, it represents a promising tool for the analysis of molecular targets for the initial ...Next-generation sequencing(NGS) technology is capable of sequencing millions or billions of DNA molecules simultaneously.Therefore, it represents a promising tool for the analysis of molecular targets for the initial diagnosis of disease, monitoring of disease progression, and identifying the mechanism of drug resistance. On behalf of the Tumor Biomarker Committee of the Chinese Society of Clinical Oncology(CSCO) and the China Actionable Genome Consortium(CAGC), the present expert group hereby proposes advisory guidelines on clinical applications of NGS technology for the analysis of cancer driver genes for precision cancer therapy. This group comprises an assembly of laboratory cancer geneticists, clinical oncologists, bioinformaticians,pathologists, and other professionals. After multiple rounds of discussions and revisions, the expert group has reached a preliminary consensus on the need of NGS in clinical diagnosis, its regulation, and compliance standards in clinical sample collection. Moreover, it has prepared NGS criteria, the sequencing standard operation procedure(SOP), data analysis, report, and NGS platform certification and validation.展开更多
The combination of organic carbon(OC) and reactive minerals is a crucial mechanism of soil carbon(C) storage, which is regulated by the formation of organo-mineral complexes on the surface of soil colloids. The effect...The combination of organic carbon(OC) and reactive minerals is a crucial mechanism of soil carbon(C) storage, which is regulated by the formation of organo-mineral complexes on the surface of soil colloids. The effect of organic fertilizer on the storage mechanism of OC in soil colloids was studied through an 8-year field experiment, which included four treatments: i) no fertilization(control, CK), ii) only mineral N, P, and K fertilization(NPK), iii) NPK plus a low level(450 kg C ha^(-1)year^(-1)) of organic fertilization(NPKC1), and iv) NPK plus a high level(900 kg C ha^(-1)year^(-1)) of organic fertilization(NPKC2). The main results indicated that organic fertilizer addition significantly increased the content of aromatic-C, which was 158.7% and 140.0% higher in soil colloids than in bulk soil in the NPKC1 and NPKC2 treatments, respectively. X-ray photoelectron spectroscopy further demonstrated that the relative proportion of C=C group on the surface of soil colloids was increased by 20.1% and 19.1% in the NPKC1 and NPKC2 treatments, respectively,compared with the CK. In addition, compared with the NPK treatment, the content of reactive minerals(such as Fe and Al oxides) significantly increased with organic fertilization, which was positively correlated with C=C group in soil colloids. This indicates that aromatic-C may be retained by the formation of aromatic-mineral complexes with reactive minerals in soil colloids. Organic fertilization also significantly increased OC storage efficiency(OCSE), which was significantly higher in the NPKC1 treatment than in the NPKC2 treatment. Therefore, a moderate amount of organic fertilizer application is a better agronomic practice to increase OCSE and OC storage in saline-alkaline paddy soils.展开更多
The effects of disinfection efficiency on microbial communities and the corrosion of cast iron pipes in drinking water distribution systems(DWDSs) were studied.Two annular reactors(ARs) that simulated actual running c...The effects of disinfection efficiency on microbial communities and the corrosion of cast iron pipes in drinking water distribution systems(DWDSs) were studied.Two annular reactors(ARs) that simulated actual running conditions with UV/Cl2 disinfection and chlorination alone were used.High chlorine consumption and corrosion rate were found in the AR with UV/Cl2.According to functional genes and pyrosequencing tests, a high percentage of iron recycling bacteria was detected within the biofilm of the AR with Cl2 at early running stage, whereas siderophore-producing bacteria were dominant in the biofilm of the AR with UV/Cl2.At the early running stage, the sequential use of UV light and an initial high chlorine dosage suppressed the biomass and iron-recycling bacteria in both bulk water and biofilms, thereby forming less protective scales against further corrosion, which enhanced chlorine consumption.Non-metric multidimensional scaling analysis showed that the bacterial communities in the ARs shaped from within rather than being imported by influents.These results indicate that the initial high disinfection efficiency within the distribution system had not contributed to the accumulation of iron-recycling bacteria at the early running stages.This study offer certain implications for controlling corrosion and water quality in DWDSs.展开更多
Aims We investigated the impact of salinity on seed germination,chlorophyll content,chloroplast structure and photosynthesis of the green embryos in desiccated seeds of the xerophyte Haloxylon persicum,xero-halophyte ...Aims We investigated the impact of salinity on seed germination,chlorophyll content,chloroplast structure and photosynthesis of the green embryos in desiccated seeds of the xerophyte Haloxylon persicum,xero-halophyte Haloxylon ammodendron and euhalophyte Suaeda physophora.Methods Seeds of H.persicum,H.ammodendron and S.physophora were collected from natural environment in Fukang,Xinjiang province.Pretreatment with 700 mM NaCl was carried out to stimulate the natural‘seed priming’;we analyzed the joint effect of salinity and different species on germination physiology and cotyledonal structure and photosynthetic function changes during germination and recovery stage.Important Findings We found that seeds did not suffer ion toxicity for the two halophytes H.ammodendron and S.physophora,as evidenced by the high final germination after ungerminated seeds pretreated with 700 mM NaCl were transferred to distilled water,but the final germination of the xerophyte H.persicum was significantly lower than that of control.The Na+concentration in embryos increased under salinity for all species,while K+concentration decreased by salinity only for H.persicum and H.ammodendron,i.e.the concentration of K+in embryos of H.persicum and H.ammodendron decreased by 36%and 46%,respectively.For all species,whether dry intact seeds or cotyledons of dry seeds imbibed in deionized water and NaCl solution,had high chlorophyll content.Treatment with NaCl also caused chloroplast thylakoids to swell and chlorophyll content to decrease in seeds of H.persicum,but no significant change was observed in the more salt-tolerant species S.physophora and H.ammodendron.Fluorescence measurement showed that 700 mM NaCl decreased the Fv/Fm ratio of cotyledons in seeds for all species,especially for H.persicum and H.ammodendron.Photosynthetic oxygen releasing was detected from the seeds that were moistened with distilled water and 700 mM NaCl for 6 or 24 h and from the seeds that were initially moistened with 700 mM NaCl in darkness for 10 days,then transferred to distilled water for another 6 and 24 h.The results indicated that the chlorophyll in cotyledon of desiccated seed had photosynthetic function in early germination stage,even under high-saline condition.In addition,the photosynthesis of chlorophyll in the embryonic cotyledons of desiccated seeds during germination was similar to that in leaves of young seedlings for all species.In conclusion,the chloroplasts of the two halophytes were more salt resistant compared with the xerophyte H.persicum.The photosynthetic function of chlorophyll in cotyledons of mature seeds may be ecologically important for seedling development in early stage for plants growing in extremely saline or arid environments.展开更多
Introduction:Plasma circulating tumor DNA(ctDNA)is an ideal approach to detecting the epidermal growth factor receptor(EGFR)T790M mutation,which is a major mechanism of resistance to first-generation EGFR-tyrosine kin...Introduction:Plasma circulating tumor DNA(ctDNA)is an ideal approach to detecting the epidermal growth factor receptor(EGFR)T790M mutation,which is a major mechanism of resistance to first-generation EGFR-tyrosine kinase inhibitor(TKI)therapy.The present study aimed to explore the association of ctDNA-identified T790M mutation with disease failure sites and clinical prognosis in non-small cell lung cancer(NSCLC)patients.Methods:Patients who progressed on first-generation TKIs were categorized into failure site groups of chest limited(CF),brain limited(BF)and other(OF).Amplification refractory mutation system(ARMS)and droplet digital PCR(ddPCR)were used to identify the T790M mutation in ctDNA.Prognosis was analyzed with Kaplan-Meier methods.Results:Overall concordance between the two methods was 78.3%.According to both ARMS and ddPCR,patients in the OF group had a significantly higher rate of T790M mutation than did patients in the BF and CF groups(P<0.001),and a significantly higher T790M mutation rate was also observed in OF-group patients than in those in the CF and BF groups(P<0.001).AZD9291 was found to be an excellent treatment option and yielded the longest survival for T790M+patients in all groups who had progressed on EGFR-TKIs;for other treatments,the prognosis of T790M−patient subgroups varied.Conclusions:The present study demonstrates that T790M mutation in ctDNA is associated with failure sites for NSCLC patients after EGFR-TKI therapy and indicates that both failure site and T790M mutational status greatly influ-ence treatment selection and prognosis.展开更多
The BRAF gene is an important signaling molecule in human cells that is involved in the regulation of cell growth,differentiation,and survival.When the BRAF gene mutates,it can lead to abnormal activation of the signa...The BRAF gene is an important signaling molecule in human cells that is involved in the regulation of cell growth,differentiation,and survival.When the BRAF gene mutates,it can lead to abnormal activation of the signaling pathway,which promotes cell proliferation,inhibits cell apoptosis,and ultimately contributes to the occurrence and development of cancer.BRAF mutations are widely present in various cancers,including malignant melanoma,thyroid cancer,colorectal cancer,non-small cell lung cancer,and hairy cell leukemia,among others.BRAF is an important target for the treatment of various solid tumors,and targeted combination therapies,represented by BRAF inhibitors,have become one of the main treatment modalities for a variety of BRAF-mutation-positive solid tumors.展开更多
基金supported by grants from Guangdong Provincial Key Lab of Translational Medicine in Lung Cancer (Grant No. 2017B030314120)General Research Project of Guangzhou Science and Technology Bureau (Grant No. 201607010391)+1 种基金National Key Research and Development Program of China (Grant No. 2016YFC1303800)Guangdong Provincial Applied S&T R&D Program (Grant No. 2016B020237006)
文摘Next-generation sequencing(NGS) technology is capable of sequencing millions or billions of DNA molecules simultaneously.Therefore, it represents a promising tool for the analysis of molecular targets for the initial diagnosis of disease, monitoring of disease progression, and identifying the mechanism of drug resistance. On behalf of the Tumor Biomarker Committee of the Chinese Society of Clinical Oncology(CSCO) and the China Actionable Genome Consortium(CAGC), the present expert group hereby proposes advisory guidelines on clinical applications of NGS technology for the analysis of cancer driver genes for precision cancer therapy. This group comprises an assembly of laboratory cancer geneticists, clinical oncologists, bioinformaticians,pathologists, and other professionals. After multiple rounds of discussions and revisions, the expert group has reached a preliminary consensus on the need of NGS in clinical diagnosis, its regulation, and compliance standards in clinical sample collection. Moreover, it has prepared NGS criteria, the sequencing standard operation procedure(SOP), data analysis, report, and NGS platform certification and validation.
基金funded by the National Key R&D Projects of China(No.2021YFD1900901-06)the Agricultural Science and Technology Innovation Projects,China(ASTIP No.CAAS-ZDRW202201)+1 种基金the Modern Agricultural Industrial Technology System of China(No.SDAIT-17-05)the Provincial Natural Science Foundation of Shandong,China(No.ZR2020MC154)。
文摘The combination of organic carbon(OC) and reactive minerals is a crucial mechanism of soil carbon(C) storage, which is regulated by the formation of organo-mineral complexes on the surface of soil colloids. The effect of organic fertilizer on the storage mechanism of OC in soil colloids was studied through an 8-year field experiment, which included four treatments: i) no fertilization(control, CK), ii) only mineral N, P, and K fertilization(NPK), iii) NPK plus a low level(450 kg C ha^(-1)year^(-1)) of organic fertilization(NPKC1), and iv) NPK plus a high level(900 kg C ha^(-1)year^(-1)) of organic fertilization(NPKC2). The main results indicated that organic fertilizer addition significantly increased the content of aromatic-C, which was 158.7% and 140.0% higher in soil colloids than in bulk soil in the NPKC1 and NPKC2 treatments, respectively. X-ray photoelectron spectroscopy further demonstrated that the relative proportion of C=C group on the surface of soil colloids was increased by 20.1% and 19.1% in the NPKC1 and NPKC2 treatments, respectively,compared with the CK. In addition, compared with the NPK treatment, the content of reactive minerals(such as Fe and Al oxides) significantly increased with organic fertilization, which was positively correlated with C=C group in soil colloids. This indicates that aromatic-C may be retained by the formation of aromatic-mineral complexes with reactive minerals in soil colloids. Organic fertilization also significantly increased OC storage efficiency(OCSE), which was significantly higher in the NPKC1 treatment than in the NPKC2 treatment. Therefore, a moderate amount of organic fertilizer application is a better agronomic practice to increase OCSE and OC storage in saline-alkaline paddy soils.
基金supported by the National Natural Science Foundation of China(Nos.31771726,51708372)the project of Agriculture Research System of China(No.CARS-18).
文摘The effects of disinfection efficiency on microbial communities and the corrosion of cast iron pipes in drinking water distribution systems(DWDSs) were studied.Two annular reactors(ARs) that simulated actual running conditions with UV/Cl2 disinfection and chlorination alone were used.High chlorine consumption and corrosion rate were found in the AR with UV/Cl2.According to functional genes and pyrosequencing tests, a high percentage of iron recycling bacteria was detected within the biofilm of the AR with Cl2 at early running stage, whereas siderophore-producing bacteria were dominant in the biofilm of the AR with UV/Cl2.At the early running stage, the sequential use of UV light and an initial high chlorine dosage suppressed the biomass and iron-recycling bacteria in both bulk water and biofilms, thereby forming less protective scales against further corrosion, which enhanced chlorine consumption.Non-metric multidimensional scaling analysis showed that the bacterial communities in the ARs shaped from within rather than being imported by influents.These results indicate that the initial high disinfection efficiency within the distribution system had not contributed to the accumulation of iron-recycling bacteria at the early running stages.This study offer certain implications for controlling corrosion and water quality in DWDSs.
文摘Aims We investigated the impact of salinity on seed germination,chlorophyll content,chloroplast structure and photosynthesis of the green embryos in desiccated seeds of the xerophyte Haloxylon persicum,xero-halophyte Haloxylon ammodendron and euhalophyte Suaeda physophora.Methods Seeds of H.persicum,H.ammodendron and S.physophora were collected from natural environment in Fukang,Xinjiang province.Pretreatment with 700 mM NaCl was carried out to stimulate the natural‘seed priming’;we analyzed the joint effect of salinity and different species on germination physiology and cotyledonal structure and photosynthetic function changes during germination and recovery stage.Important Findings We found that seeds did not suffer ion toxicity for the two halophytes H.ammodendron and S.physophora,as evidenced by the high final germination after ungerminated seeds pretreated with 700 mM NaCl were transferred to distilled water,but the final germination of the xerophyte H.persicum was significantly lower than that of control.The Na+concentration in embryos increased under salinity for all species,while K+concentration decreased by salinity only for H.persicum and H.ammodendron,i.e.the concentration of K+in embryos of H.persicum and H.ammodendron decreased by 36%and 46%,respectively.For all species,whether dry intact seeds or cotyledons of dry seeds imbibed in deionized water and NaCl solution,had high chlorophyll content.Treatment with NaCl also caused chloroplast thylakoids to swell and chlorophyll content to decrease in seeds of H.persicum,but no significant change was observed in the more salt-tolerant species S.physophora and H.ammodendron.Fluorescence measurement showed that 700 mM NaCl decreased the Fv/Fm ratio of cotyledons in seeds for all species,especially for H.persicum and H.ammodendron.Photosynthetic oxygen releasing was detected from the seeds that were moistened with distilled water and 700 mM NaCl for 6 or 24 h and from the seeds that were initially moistened with 700 mM NaCl in darkness for 10 days,then transferred to distilled water for another 6 and 24 h.The results indicated that the chlorophyll in cotyledon of desiccated seed had photosynthetic function in early germination stage,even under high-saline condition.In addition,the photosynthesis of chlorophyll in the embryonic cotyledons of desiccated seeds during germination was similar to that in leaves of young seedlings for all species.In conclusion,the chloroplasts of the two halophytes were more salt resistant compared with the xerophyte H.persicum.The photosynthetic function of chlorophyll in cotyledons of mature seeds may be ecologically important for seedling development in early stage for plants growing in extremely saline or arid environments.
基金supported by grants from Projects of Medical and Health Technology in Zhejiang Province(WKJ-2J-1532)the Zhejiang Provincial Natural Science Foundation(LY15H160010)National Natural Science Foundation of China(Grant No.81602671).
文摘Introduction:Plasma circulating tumor DNA(ctDNA)is an ideal approach to detecting the epidermal growth factor receptor(EGFR)T790M mutation,which is a major mechanism of resistance to first-generation EGFR-tyrosine kinase inhibitor(TKI)therapy.The present study aimed to explore the association of ctDNA-identified T790M mutation with disease failure sites and clinical prognosis in non-small cell lung cancer(NSCLC)patients.Methods:Patients who progressed on first-generation TKIs were categorized into failure site groups of chest limited(CF),brain limited(BF)and other(OF).Amplification refractory mutation system(ARMS)and droplet digital PCR(ddPCR)were used to identify the T790M mutation in ctDNA.Prognosis was analyzed with Kaplan-Meier methods.Results:Overall concordance between the two methods was 78.3%.According to both ARMS and ddPCR,patients in the OF group had a significantly higher rate of T790M mutation than did patients in the BF and CF groups(P<0.001),and a significantly higher T790M mutation rate was also observed in OF-group patients than in those in the CF and BF groups(P<0.001).AZD9291 was found to be an excellent treatment option and yielded the longest survival for T790M+patients in all groups who had progressed on EGFR-TKIs;for other treatments,the prognosis of T790M−patient subgroups varied.Conclusions:The present study demonstrates that T790M mutation in ctDNA is associated with failure sites for NSCLC patients after EGFR-TKI therapy and indicates that both failure site and T790M mutational status greatly influ-ence treatment selection and prognosis.
基金supported by the Natural Science Foundation of China(grant number 82002456)China Postdoctoral Science Foundation(grant number 2022M723207)+10 种基金the Medical Scientific Research Foundation of Zhejiang Province,China(grant number 2023KY666)Zhejiang Traditional Chinese Medicine Science Fund Project(grant number 2024ZL372)Qiantang Cross Fund Project(grant number 2023-16)National Natural Science Foundation of China of Zhejiang Cancer Hospital Cultivation Project(grant number PY2023006)the Medical Scientific Research Foundation of Zhejiang Province,China(grant number 2024KY812)the Natural Science Foundation of Zhejiang Province(grant number LQ24H160036)Beijing Health Technologies Promotion Program[grant number BHTPP2022041]Peking University Clinical Scientist Training Program and the Fundamental Research Funds for the Central Universities[grant number BMU2024PYJH010]Science Foundation of Peking University Cancer Hospital[grant number PY202333]the Beijing Natural Science Foundation[grant number 7232248]Beijing Hospitals Authority Youth Programme[grant number QML20231902].
文摘The BRAF gene is an important signaling molecule in human cells that is involved in the regulation of cell growth,differentiation,and survival.When the BRAF gene mutates,it can lead to abnormal activation of the signaling pathway,which promotes cell proliferation,inhibits cell apoptosis,and ultimately contributes to the occurrence and development of cancer.BRAF mutations are widely present in various cancers,including malignant melanoma,thyroid cancer,colorectal cancer,non-small cell lung cancer,and hairy cell leukemia,among others.BRAF is an important target for the treatment of various solid tumors,and targeted combination therapies,represented by BRAF inhibitors,have become one of the main treatment modalities for a variety of BRAF-mutation-positive solid tumors.