Automated apoptosis identification in fluorescence imaging of nucleus based on histogram of oriented gradients of high-frequency wavelet coefficients

The automatic and accurate identification of apoptosis facilitates large-scale cell analysis.Most identification approaches using nucleus fluorescence imaging are based on specific morphological parameters.However,these parameters cannot completely describe nuclear morphology,thus limiting the identification accuracy of models.This paper proposes a new feature extraction method to improve the performance of the model for apoptosis identification.The proposed method uses a histogram of oriented gradient(HOG)of high-frequency wavelet coefficients to extract internal and edge texture information.The HOG vectors are classified using support vector machine.The experimental results demonstrate that the proposed feature extraction method well performs apoptosis identification,attaining 95:7% accuracy with low cost in terms of time.We confirmed that our method has potential applications to cell biology research.

Rodent-mediated plant community competition:what happens to the seeds after entering the adjacent stands?

Background:Seed dispersal by scatter-hoarding animals can affect the developmental dynamics of plant communities.However,how animals might participate in plant inter-community competition has rarely been investigated.Forest community junction is an area where the competition between plant communities is most prominent and animal activity is more frequent.At present,little is known about how scatter-hoarding animals might assist competitions by adjacent plant communities.Thus,for 3 years(2015–2017),we tracked the fate of 2880 tagged seeds(Quercus aliena var.acuteserrata,Pinus tabuliformis,and P.armandii seed)placed near an edge where the forest composition changes from a pine forest to an oak forest in northwestern China.Results:We found that the seed fates differed when Quercus and Pinus seeds entered adjacent stands.In contrast to Pinus seeds,acorns that entered pine forests were characterized by higher caching rates and longer dispersal distances.Pinus seeds had the highest probability of being predated(85%)by rodents,and eleven Q.aliena var.acuteserrata seedlings were established in pine forests,although none survived in the later stages.In addition,rodents exhibited obvious selectivity in terms of the microhabitats for the seed caching sites.Conclusions:Seed fates differed when Quercus and Pinus seeds entered adjacent stands.The predation pressure by rodents on the seeds of Pinus species limited the germination of seeds and seedling establishment in oak forests.The different seed fates after their bidirectional dispersal could affect the differences in natural regeneration between pine and oak forests,and they might increase the recruitment rates for oak at the edge of an adjacent community.Rodent-mediated seed dispersal could potential unintentionally affect the competition between plant communities.

Resident to exhausted CD4+T cell ratio is associated with the prognosis of gastric cancer

Gastric cancer(GC)ranks fifth for cancer incidence and fourth for mortality globally.1 Clinical outcomes have varied among patients receiving similar treatments at the same stage,suggesting the current prognostic tools remain somewhat flawed.2,3 single-cell analysis of GC data allowed us to dissect transcriptional programs underlying lymphocyte residency and exhaustion.