Molecular quantification of copepod Acartia erythraea feeding on different algae preys

Quantitative evaluation of the copepod feeding process is critical for understanding the functioning of marine food webs, as this provides a major link between primary producers and higher trophic levels. In this study, a molecular protocol based on quantitative polymerase chain reaction(qPCR) targeting 18S rDNA was developed and used to investigate the feeding and digestion rates of the copepod Acartia erythraea in a laboratory experiment using microalgae Thalassiosira weissflogii, Prorocentrum shikokuense, and Alexandrium catenella as prey. Although offered an equal encounter rate based on biovolume, prey uptake varied substantially among the three algal species, with the ingestion rate(IR) and digestion rate(DR) of A. erythraea differing significantly(P <0.001) based on both cell counting and qPCR detection. Acartia erythraea showed the highest IR(2.79×10~4 cells/(ind.·h)) and DR(2.43×10~4 cells/(ind.·h)) on T. weissflogii, and the lowest amounts of ingested P. shikokuense were detected. The highest assimilation rate(~90.64%, IR/DR) was observed in copepods fed with P. shikokuense. The qPCR method used here can help determine the digestion rate and assimilation rate of copepods by detecting cells remaining in the gut hence providing the possibility to examine trophic links involving key species in the marine ecosystem. Our results indicate that A. erythraea has diet-specific feeding performance in different processes, and a quantitative assessment of copepod feeding is needed to accurately determine its functional role in the energy and matter uptake from marine food webs.

Genome-wide identification and characterization of the lateral organ boundaries domain gene family in Brassica rapa var.rapa

The Lateral Organ Boundaries Domain(LBD)genes encode highly conserved plant-specific LOB domain proteins which regulate growth and development in various species.However,members of the LBD gene family have yet to be identified in Brassica rapa var.rapa.In the present study,fifty-nine LBD genes were identified and distributed on 10 chromosomes.The BrrLBD proteins are predicted to encode hydrophobic polypeptides between 118 and 394 amino acids in length and with molecular weights ranging from 13.31 to 44.24 kDa;the theoretical pi for these proteins varies from 4.83 to 9.68.There were 17 paralogous gene pairs in the BrrLBD family,suggesting that the amplification of the BrrLBD gene family involved largescale gene duplication events.Members of the BrrLBD family were divided into 7 subclades(class I a to e,class II a and b).Analysis of gene structure and conserved domains revealed that most BrrLBD genes of the same subclade had similar gene structures and protein motifs.The expression profiles of 59 BrrLBD genes were determined through Quantitative Real-time fluorescent PCR(qRT-PCR).Most BrrLBD genes in the same subclade had similar gene expression profiles.However,the expression patterns of 7 genes differed from their duplicates,indicating that although the gene function of most BrrLBD genes has been conserved,some BrrLBD genes may have undergone evolutionary change.

Detection of composition of functional component theabrownins in Pu-erh tea by degradation method

Habitual tea consumption can reduce the risk of ASCVD morbidity and mortality and all-cause mortality in China,and long-term adherence to this habit can provide greater protection.Pu-erh tea is one of the representatives of post-fermented teas,and the polymers in Pu-erh tea have anti-cancer and anti-hyperlipidemic activities,but their chemical composition is still unknown.In this study,the chemical composition of Pu-erh tea was investigated in detail and eight(1–8)known compounds were isolated.The polymers in Pu-erh tea were also degraded by thiol degradation,and the fragments of quercetin and(–)-epicatechin-3-O-gallate were found in the thiol degradation products of Pu-erh tea polymers by UPLC observation and separation and purification.This is the first time that this fragment was obtained in Pu-erh tea polymer.

Flexible feeding patterns of copepod Centropages tenuiremis in fluctuating conditions: a possible survival strategy to cope with disturbance

Centropages tenuiremis is a species with a wide distribution range in disturbed coastal waters.However,due to a lack of dietary information,it remains unclear as to how they maintain such dominance in fluctuating conditions.In this study,C.tenuiremis was collected from the Daya Bay Nuclear Power Plant both in inlet and outfall regions at 06:00,12:00 and 18:00 on April 27,2011 and their in situ diet was analyzed using a PCR protocol targeting 18S ribosomal genes.Thirty-four species of prey organisms were identified totally,including Dinophyta,Baciliariophyta,Viridiplantae,Rhizaria,Apicomplexa,Chordata,Mollusca,Arthropoda and Fungi,indicating an obvious omnivorous feeding habit of C.tenuiremis.Centropages tenuiremis obviously exhibited spatial and temporal variations in diet composition.More plant prey(land plants and phytoplankton)were consumed in the morning(~50%),while more animal prey(metazoans and protozoans)were ingested at midday and night(60%–70%).Furthermore,a more diverse diet was detected in the outfall region(10–11 taxa),where the temperatures were relatively higher and more fluctuating,than in the control region(5–10 taxa).This finding indicated that C.tenuiremis could potentially expand its food spectrum under stressful condition.Specifically,C.tenuiremis exhibited phytoplankton preference(58.62%–67.64%)in the outfall region with a lower omnivory index(0.27–0.35)than in the control region(0.51–0.95).However,phytoplankton density was lower than that in the control region,suggesting a possible herbivorous tendency of C.tenuiremis under elevated temperatures to balance the energy acquirement and feeding effort.The flexible food choices of C.tenuiremis observed here could effectively buffer environmental fluctuations and might be an important survival strategy in coastal ecosystems.

Mechanisms of high-frequency dinoflagellate blooms of Scrippsiella trochoidea in Daya Bay,South China Sea

Harmful algal blooms(HABs),such as dinoflagellate blooms,have adverse eff ects on coastal water environments,causing seafood contamination and aquaculture economic losses.Based on historical HAB records data(1983-2017)and phytoplankton data(1982-2008),field investigation and laboratory experiments on frequently bloomed dinoflagellate species,we analyzed the possible mechanisms of high frequency dinoflagellate blooms in Daya Bay,South China Sea.The HAB records data show that the proportion of dinoflagellate blooms increased from 15% before 1994 to 77.27% after 2011.The bloom occurred mostly in summer(57.58%)in Yaling Bay(76.92%).The species inducing dinoflagellate blooms tended to be singular over time,with high proportion of Scrippsiella trochoidea(42.86%-88.88%).Laboratory experiment and field investigation of S.trochoidea bloom showed that this species grew rapidly at 30℃ and 32.1℃(r=0.47,P<0.05),respectively.Results indicate that temperature rise in Yaling Bay was aff ected by nearby nuclear plant effluent,which favored the S.trochoidea bloom.Coincidently,nearly 70% of S.trochoidea blooms occurred in about 7 days after local spring tide and strong wind(wind velocity>7 m/s),which disturbed the resting cysts in the sediment and bring them into surface layer.Taking into account of environmental parameters,algae source,and atmospheric conditions,the probable mechanism of S.trochoidea bloom could be explained.The cysts were resuspended by the spring tide or strong wind,germinated at the bottom layer,reproduced rapidly at higher temperature,and then aggregated in the inner bay(Yaling Bay),resulting the frequent S.trochoidea bloom.Considering the influences of global warming and human activities,it should be taken more attention that dinoflagellate blooms might increase along the coastal waters.

Dietary separation between co-occurring copepods in a food-limited tropical coral reef of the Sanya Bay

Food differentiation among coexistent species in the field is important strategy for copepods to acquire materials and maintain population stabilization.In situ diet analysis of co-occurring six copepod species in coral waters of the Sanya Bay was conducted using a PCR protocol based on 18 S ribosomal gene.Various prey organisms were uncovered,including dinoflagellate,diatom,green algae and plant,protozoa and metazoan.All these spatially coexisting six species showed different dietary diversity,with the food niche breadth(B)ranging from 1.00(Temora turbinate in morning)to 10.68(Calanopia elliptica in night).While food overlap between all these copepods were low,with the average value of the diet niche overlap index being approximately 0.09.Even temporally co-existing species sampled from the same time point fed on different groups of prey items with the food overlap index of 0.04 to 0.07 in midday and night but 0 in morning.As the most important dominant copepod in the Sanya Bay,Subeucalanus subcrassus seems to be capable to regulate its feeding,by exhibiting a rhythm of herbivorous feeding in midday and carnivorous feeding in morning and night,to better coordinate with other competitors for utilization of food resources.For most copepods,none of the prey items belonged to the dominant phytoplankton in the ambient water,indicating that copepod can better their survival by widening the choice of potential food resources in food limited environment.The dietary separation observed here might be important strategy for copepod to maintain population stabilization and thriving in the Sanya coastal waters.

Significant strain-rate dependence of sensing behavior in Ti0_(2)@carbon fibre/PDMS composites for flexible strain sensors

Carbon fibre(CF)embedded into elastomeric media has been attracting incredible interest as flexible strain sensors in the application of skin electronics owing to their high sensitivity in a very small strain gauge.To further improve the sensitivity of CF/PDMS composite strain sensor,the relatively low temperature prepared TiO_(2) nanowire via hydrothermal route was employed herein to functionalize CF.The results showed a significant increase in the sensitivity of the TiO_(2)@CF/PDMS composite strain sensors which was reflected by the calculated gauge factor.As the prepared TiO_(2) nanowire vertically embraced the surroundings of the CF,the introduced TiO_(2) nanowire contributed to a highly porous structure which played a predominant role in improving the sensitivity of strain sensors.Moreover,the significant strain rate dependent behavior of TiO_(2)@CF/PDMS strain sensor was revealed when performing monotonic tests at varied strain rate.Therefore,introducing TiO_(2) nanowire on CF offers a new technique for fabricating flexible strain sensors with improved sensitivity for the application of flexible electronics.