Physiological Dynamics and Transcriptomic Analysis of Cut Roses‘Carola’Treated with KNO_(3)

The consumption of cut roses(Rosa hybrida)has always ranked first in the world.However,it is vulnerable to rapid petal and leaf wilting due to leaf stomatal water loss,which seriously affects its ornamental quality and economic value.Stomatal movement,a key in plant physiological processes,is influenced by potassium and nitrate.Advancing comprehension of its physiological and molecular mechanism holds promise for preserving the freshness of cut roses.This study observed the impacts of different concentrations of KNO_(3) vase treatments on stomatal opening and water loss in cut rose‘Carola’leaves,as well as their transcriptional responses to KNO_(3).Water loss rates were influenced by KNO_(3) concentrations,with the 25 and 75 mmol/L treatments exhibiting the highest water loss rates.The stomatal aperture reached its widest value when treated with 75 mmol/L KNO_(3).Transcriptional sequencing analysis was performed to identify differentially expressed genes(DEGs)of which 5456 were up-regulated,and 6607 were down-regulated associated with photosynthesis,starch and sucrose metabolism,metabolic pathways,plant-pathogen interaction,plant hormone signal transduction,and related pathways.246 DEGs were selected related to response to KNO_(3) treatment,of which gene ontology(GO)enrichment were nitrate and terpenoid metabolism,ion transport,and response to stimuli.Further heatmap analysis revealed that several genes related to nitrate transport a metabolism,K+transport,vacuoles,and aquaporin were in close association with the response to KNO_(3) treatment.Weighted gene co-expression network analysis(WGCNA)revealed that hub genes,including LAX2,TSJT1,and SCPL34 were identified in turquoise,black,and darkgreen module.Transcription factors such as NAC021,CDF3,ERF053,ETR2,and ARF6 exhibited regulatory roles in the response to KNO_(3) treatment under light conditions.These findings provide valuable insights into the physiological and molecular mechanisms underlying the response of cut rose leaves to KNO_(3) treatment.

Sequencing-based methods for single-cell multi-omics studies

Single-cell multi-omics technologies have thrived in recent years.The combined studies of different modalities in single cells have enabled comprehensive insights into the complex functional networks of vital biomacromolecules,thus paving the way for a thorough understanding of cell biology and pathology.In this review,we focus on the advances of single-cell multi-omics technologies utilizing sequencing strategies and propose potential perspectives.

Programmable DNA-responsive microchip for the capture and release of circulating tumor cells by nucleic acid hybridization

The detection and analysis of circulating tumor cells （CTCs） from patients＇ blood is important to assess tumor status; however, it remains a challenge. In the present study, we developed a programmable DNA-responsive microchip for the highly efficient capture and nondestructive release of CTCs via nucleic acid hybridization. Transparent and patternable substrates with hierarchical architectures were integrated into the microchip with herringbone grooves, resulting in greatly enhanced cell-surface interaction via herringbone micromixers, more binding sites, and better matched topographical interactions. In combination with a high-affinity aptamer, target cancer cells were specifically and efficiently captured on the chip. Captured cancer cells were gently released from the chip under physiological conditions using toehold-mediated strand displacement, without any destructive factors for cells or substrates. More importantly, aptamercontaining DNA sequences on the surface of the retrieved cancer cells could be further amplified by polymerase chain reaction （PCR）, facilitating the detection of cell surface biomarkers and characterization of the CTCs. Furthermore, this system was extensively applied to the capture and release of CTCs from patients＇ blood samples, demonstrating a promising high-performance platform for CTC enrichment, release, and characterization.

Co-transformation to tobacco of Cre/lox site-specific recombination system and its precise recombination

For the temporally and spatially regulated expression of the barnase gene in plant, two kinds of plasmids with ere gene and its directly repeat recognition sites lox from bacteriophage P1 were constructed and co-transformed into tobacco by agrobacterium mediated procedure. The transgenic plants were conformed by PCR analysis. The blocking fragment between the two lox directly repeat sites was excised by Cre protein in the transgenic plant genome. Cloning and seguencing the DNA fragment from the co-transformed plant DNA showed that the precise DNA excision occurred in transgenic tobacco genome directed by Cre//ox site-specif ic recombination .